Guide to the Human Genome
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Name: MAMDC2 Sequence: fasta or formatted (686aa) NCBI GI: 223278413
Description:

MAM domain containing 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         38           2
 C cysteine            2.8         19           1
 D aspartate           4.7         32           2
 E glutamate           7.7         53           2
 F phenylalanine       5.0         34           2
 G glycine             7.9         54           3
 H histidine           2.3         16           1
 I isoleucine          4.8         33           2
 K lysine              4.2         29           2
 L leucine             9.9         68           2
 M methionine          2.2         15           1
 N asparagine          3.5         24           1
 P proline             4.4         30           4
 Q glutamine           4.7         32           2
 R arginine            4.1         28           3
 S serine              8.7         60           3
 T threonine           4.8         33           2
 V valine              5.5         38           2
 W tryptophan          2.2         15           1
 Y tyrosine            5.1         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MAM domain containing 2 
C10orf112             0.084   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.083   PREDICTED: chromosome 10 open reading frame 112 [Ho...
MAMDC4                0.072   apical early endosomal glycoprotein precursor [Homo...
C10orf112             0.068   PREDICTED: chromosome 10 open reading frame 112 [Ho...
MDGA2                 0.057   MAM domain containing 1 isoform 1 
MDGA2                 0.057   MAM domain containing 1 isoform 2 
ZAN                   0.051   zonadhesin isoform 3 
ZAN                   0.051   zonadhesin isoform 6 
MDGA1                 0.049   MAM domain containing glycosylphosphatidylinositol a...
PRSS7                 0.042   enterokinase precursor 
NRP1                  0.035   neuropilin 1 isoform a 
PTPRM                 0.026   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.026   protein tyrosine phosphatase, receptor type, M isof...
PTPRU                 0.026   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.026   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.026   protein tyrosine phosphatase, receptor type, U isof...
PTPRT                 0.024   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.024   protein tyrosine phosphatase, receptor type, T isof...
PTPRK                 0.024   protein tyrosine phosphatase, receptor type, K isof...
PTPRK                 0.024   protein tyrosine phosphatase, receptor type, K isofo...
NRP2                  0.024   neuropilin 2 isoform 2 precursor 
MEP1B                 0.023   meprin A beta 
NRP2                  0.021   neuropilin 2 isoform 3 precursor 
NRP2                  0.021   neuropilin 2 isoform 5 precursor 
NRP2                  0.021   neuropilin 2 isoform 1 precursor 
NRP2                  0.021   neuropilin 2 isoform 4 precursor 
EGFL6                 0.021   epidermal growth factor-like protein 6 precursor [Ho...
LOC100130846          0.020   PREDICTED: hypothetical protein 
LOC100130846          0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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