Guide to the Human Genome
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Name: LOC100294476 Sequence: fasta or formatted (60aa) NCBI GI: 239749652
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          1           1
 C cysteine            0.0          0           0
 D aspartate           1.7          1           1
 E glutamate          18.3         11           1
 F phenylalanine       1.7          1           1
 G glycine             8.3          5           2
 H histidine           1.7          1           1
 I isoleucine          1.7          1           1
 K lysine             26.7         16           2
 L leucine             1.7          1           1
 M methionine          1.7          1           1
 N asparagine          3.3          2           1
 P proline             1.7          1           1
 Q glutamine           3.3          2           1
 R arginine           18.3         11           1
 S serine              0.0          0           0
 T threonine           3.3          2           1
 V valine              3.3          2           2
 W tryptophan          1.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133599          0.250   PREDICTED: hypothetical protein 
LOC100131202          0.220   PREDICTED: hypothetical protein 
LOC100133698          0.220   PREDICTED: hypothetical protein 
LOC100133599          0.200   PREDICTED: hypothetical protein 
PHF14                 0.200   PHD finger protein 14 isoform 2 
PHF14                 0.200   PHD finger protein 14 isoform 1 
RBM25                 0.200   RNA binding motif protein 25 
BAT2D1                0.200   HBxAg transactivated protein 2 
ZC3H13                0.200   zinc finger CCCH-type containing 13 
LOC100294088          0.190   PREDICTED: hypothetical protein, partial 
SFRS12                0.190   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.190   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100286959          0.190   PREDICTED: hypothetical protein XP_002343921 
TBC1D10B              0.190   TBC1 domain family, member 10B 
KIAA0182              0.190   genetic suppressor element 1 isoform 2 
KIAA0182              0.190   genetic suppressor element 1 isoform 1 
DHX15                 0.190   DEAH (Asp-Glu-Ala-His) box polypeptide 15 
LOC100294364          0.180   PREDICTED: hypothetical protein 
LOC100131202          0.180   PREDICTED: hypothetical protein 
ZC3H18                0.180   zinc finger CCCH-type containing 18 
TCOF1                 0.170   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.170   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.170   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.170   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.170   Treacher Collins-Franceschetti syndrome 1 isoform a ...
AP3D1                 0.170   adaptor-related protein complex 3, delta 1 subunit ...
ACIN1                 0.160   apoptotic chromatin condensation inducer 1 
TAF3                  0.160   RNA polymerase II transcription factor TAFII140 [Ho...
RBM39                 0.160   RNA binding motif protein 39 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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