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Search of human proteins with 117956393
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117956393 glycine/arginine rich protein 1 [Homo sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117956393 glycine/arginine rich protein 1 [Homo sapiens] 559 e-159
gi|118200352 hypothetical protein LOC642273 [Homo sapiens] 112 4e-25
gi|46391104 hypothetical protein LOC83541 [Homo sapiens] 105 5e-23
gi|108389127 hypothetical protein LOC83541 [Homo sapiens] 105 5e-23
gi|13937401 hypothetical protein LOC83541 [Homo sapiens] 105 5e-23
gi|22218339 hypothetical protein LOC90362 [Homo sapiens] 55 8e-08
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 43 3e-04
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 39 0.005
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 39 0.006
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 38 0.008
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 38 0.008
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 37 0.014
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 37 0.014
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 37 0.014
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 37 0.018
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 37 0.018
gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo ... 37 0.024
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 37 0.024
gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo ... 37 0.024
gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo ... 37 0.024
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 37 0.024
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 37 0.024
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 37 0.024
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 37 0.024
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 36 0.031
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 36 0.041
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 36 0.041
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 36 0.041
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 36 0.041
>gi|117956393 glycine/arginine rich protein 1 [Homo sapiens]
Length = 271
Score = 559 bits (1440), Expect = e-159
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MLLAPPSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGP 60
MLLAPPSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGP
Sbjct: 1 MLLAPPSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGP 60
Query: 61 PASPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAA 120
PASPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAA
Sbjct: 61 PASPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAA 120
Query: 121 PSSPASTERPAASGGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCGLERALVEVLG 180
PSSPASTERPAASGGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCGLERALVEVLG
Sbjct: 121 PSSPASTERPAASGGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCGLERALVEVLG 180
Query: 181 AERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARDRR 240
AERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARDRR
Sbjct: 181 AERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARDRR 240
Query: 241 PPVSVVERNARVIQWLYGCQRARGPPRESEV 271
PPVSVVERNARVIQWLYGCQRARGPPRESEV
Sbjct: 241 PPVSVVERNARVIQWLYGCQRARGPPRESEV 271
>gi|118200352 hypothetical protein LOC642273 [Homo sapiens]
Length = 321
Score = 112 bits (279), Expect = 4e-25
Identities = 98/313 (31%), Positives = 133/313 (42%), Gaps = 66/313 (21%)
Query: 6 PSTPSRGRTP--------SAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNE 57
P P+ R P SAVERL AD+AKYV+ R A GS P N+
Sbjct: 17 PRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGV--ASEGSGPGAIKCPGND 74
Query: 58 LGPPASPRTPRPV-RRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAP 116
GPPA R P PV RR R+ RPDSLI YRQK + + + LV++LF G
Sbjct: 75 PGPPA--RAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRAS-LVKKLFQGPG 131
Query: 117 RDAAP-----------------------SSPASTERPAASGGWAAPQDAPEAA------- 146
+D AP + PA+ E PA + AAP P A
Sbjct: 132 KDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPEPRV 191
Query: 147 --------GKRALCPTCSLPLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAG 198
+ L S L+E + FF YCGL+ +VE LG E F+ S ++
Sbjct: 192 VRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFTAGSDCVTLKVRSV 251
Query: 199 TSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARDRRPPV-SVVERNARVIQWLY 257
+ GSG + D G+ ++ P SV+ERNAR+I+WLY
Sbjct: 252 SVATSGSGFSRHSGGDDEGLQEE-------------ELIEQVPSTTSVIERNARIIKWLY 298
Query: 258 GCQRARGPPRESE 270
C++A+ P + +
Sbjct: 299 TCKKAKETPSQEQ 311
>gi|46391104 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 105 bits (261), Expect = 5e-23
Identities = 99/280 (35%), Positives = 115/280 (41%), Gaps = 52/280 (18%)
Query: 13 RTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGPPASPRTPRPVRR 72
R PSAVERLEADKAKYVK+ V RQEP P P SP T R V
Sbjct: 38 RKPSAVERLEADKAKYVKSLHVANTRQEPV----------QPLLSKQPLFSPETRRTVLT 87
Query: 73 GSGRRLPRP-----------DSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAP 121
S R LP P SLI A ++ + +G R PR
Sbjct: 88 PSRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPATPPRPPPS 147
Query: 122 SS----------PASTERPAASGGWAAPQDAPEAAG----KRALCPTCSLPLSEKERFFN 167
+S PAS RP S G AA G K L S ++ ERFFN
Sbjct: 148 TSAVRRVDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLSERFSRAAADLERFFN 207
Query: 168 YCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGG 227
+CGL+ LG + S +D AG S PGS S GG
Sbjct: 208 FCGLDPEEARGLGVAHLARAS--SDIVSLAGPSAGPGS--------------SEGGCSRR 251
Query: 228 GGSEAAGSARDRRP-PVSVVERNARVIQWLYGCQRARGPP 266
AR+R P VSVVERNARVI+WLYG ++AR P
Sbjct: 252 SSVTVEERARERVPYGVSVVERNARVIKWLYGLRQARESP 291
>gi|108389127 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 105 bits (261), Expect = 5e-23
Identities = 99/280 (35%), Positives = 115/280 (41%), Gaps = 52/280 (18%)
Query: 13 RTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGPPASPRTPRPVRR 72
R PSAVERLEADKAKYVK+ V RQEP P P SP T R V
Sbjct: 38 RKPSAVERLEADKAKYVKSLHVANTRQEPV----------QPLLSKQPLFSPETRRTVLT 87
Query: 73 GSGRRLPRP-----------DSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAP 121
S R LP P SLI A ++ + +G R PR
Sbjct: 88 PSRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPATPPRPPPS 147
Query: 122 SS----------PASTERPAASGGWAAPQDAPEAAG----KRALCPTCSLPLSEKERFFN 167
+S PAS RP S G AA G K L S ++ ERFFN
Sbjct: 148 TSAVRRVDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLSERFSRAAADLERFFN 207
Query: 168 YCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGG 227
+CGL+ LG + S +D AG S PGS S GG
Sbjct: 208 FCGLDPEEARGLGVAHLARAS--SDIVSLAGPSAGPGS--------------SEGGCSRR 251
Query: 228 GGSEAAGSARDRRP-PVSVVERNARVIQWLYGCQRARGPP 266
AR+R P VSVVERNARVI+WLYG ++AR P
Sbjct: 252 SSVTVEERARERVPYGVSVVERNARVIKWLYGLRQARESP 291
>gi|13937401 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 105 bits (261), Expect = 5e-23
Identities = 99/280 (35%), Positives = 115/280 (41%), Gaps = 52/280 (18%)
Query: 13 RTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGPPASPRTPRPVRR 72
R PSAVERLEADKAKYVK+ V RQEP P P SP T R V
Sbjct: 38 RKPSAVERLEADKAKYVKSLHVANTRQEPV----------QPLLSKQPLFSPETRRTVLT 87
Query: 73 GSGRRLPRP-----------DSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAP 121
S R LP P SLI A ++ + +G R PR
Sbjct: 88 PSRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPATPPRPPPS 147
Query: 122 SS----------PASTERPAASGGWAAPQDAPEAAG----KRALCPTCSLPLSEKERFFN 167
+S PAS RP S G AA G K L S ++ ERFFN
Sbjct: 148 TSAVRRVDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLSERFSRAAADLERFFN 207
Query: 168 YCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGG 227
+CGL+ LG + S +D AG S PGS S GG
Sbjct: 208 FCGLDPEEARGLGVAHLARAS--SDIVSLAGPSAGPGS--------------SEGGCSRR 251
Query: 228 GGSEAAGSARDRRP-PVSVVERNARVIQWLYGCQRARGPP 266
AR+R P VSVVERNARVI+WLYG ++AR P
Sbjct: 252 SSVTVEERARERVPYGVSVVERNARVIKWLYGLRQARESP 291
>gi|22218339 hypothetical protein LOC90362 [Homo sapiens]
Length = 370
Score = 54.7 bits (130), Expect = 8e-08
Identities = 60/215 (27%), Positives = 85/215 (39%), Gaps = 32/215 (14%)
Query: 75 GRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAP-SSPASTERPAAS 133
GRR P+ R+ + A + +R++ P A P SS A P
Sbjct: 170 GRRSPQEGGSHVGRRLLEQSAESFLHVSHSSSDIRKVTSVKPLKAIPCSSSAPPLPPKPK 229
Query: 134 GGWAAPQDAPEAAGKRALCPTCSLP--------LSEK--------ERFFNYCGLERALVE 177
A +PEA C P LS++ ERFFNYCGL+ +E
Sbjct: 230 IAAIASMKSPEADPVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELE 289
Query: 178 VLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSAR 237
LG E F+ + + S + S ++SD D SA
Sbjct: 290 NLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDD--------------SAN 335
Query: 238 DRRP-PVSVVERNARVIQWLYGCQRARGPPRESEV 271
DR P +S +ERNAR+I+WLY ++AR + S V
Sbjct: 336 DRVPYGISAIERNARIIKWLYSIKQARESQKVSHV 370
Score = 45.1 bits (105), Expect = 7e-05
Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 16 SAVERLEADKAKYVKTHQVIARRQE---PALRGSPGPLTPHPCNELGPP 61
SAVERLEADKAKYVK+ +VI +QE PA+ P P+ P LG P
Sbjct: 49 SAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKP-PVCPAAKRALGSP 96
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 42.7 bits (99), Expect = 3e-04
Identities = 57/225 (25%), Positives = 81/225 (36%), Gaps = 44/225 (19%)
Query: 39 QEPALRGSPGPLTPHPCNELGPPA-SPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCKASV 97
+EP L +P + CN++G P+ SP + G+ F+ KR +S
Sbjct: 8 EEPRLGSTPLAMLAATCNKIGSPSPSPSSLSDSSSSFGKG--------FHPWKRSSSSSS 59
Query: 98 NKENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGWAAPQDAPEAAGKRALCPTCSL 157
N G L GA R+ SS A+ AA+ A D+ G
Sbjct: 60 ASCNVVGSSLSSFGVSGASRNGGSSSAAAAAAAAAAAAAALVSDSFSCGGSP-------- 111
Query: 158 PLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDR- 216
G+ FS S A A+ A + S A+D++
Sbjct: 112 ----------------------GSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAP 149
Query: 217 GVD--SPGGAGGGGGSEAAGSARDRRPPV--SVVERNARVIQWLY 257
GV S GG GGGGG +A S PV S V + +Q +Y
Sbjct: 150 GVSGGSGGGGGGGGGGSSAHSQDGSHQPVFISKVHTSVDGLQGIY 194
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 38.9 bits (89), Expect = 0.005
Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 6 PSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGPPASPR 65
P PSR R+PS+ +L AD + AL GSP P P P PA+P
Sbjct: 42 PGPPSRSRSPSSRLKLPADPPR--------------ALPGSPEPPPPPP------PAAPH 81
Query: 66 T-PRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAPSSP 124
V G RL S + R K K +G+ R+ R AAP+SP
Sbjct: 82 VLGARVAAGPTHRLSASHSRVSSRGPVGTKP---KRPGQGRRAGARM-----RSAAPASP 133
Query: 125 ASTERPAASGGWAAPQDAPEAAGKRAL 151
+ A S + P P A R+L
Sbjct: 134 RARAARAISNQSSPPPPPPSRARSRSL 160
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 38.9 bits (89), Expect = 0.005
Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 6 PSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGPPASPR 65
P PSR R+PS+ +L AD + AL GSP P P P PA+P
Sbjct: 42 PGPPSRSRSPSSRLKLPADPPR--------------ALPGSPEPPPPPP------PAAPH 81
Query: 66 T-PRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAPSSP 124
V G RL S + R K K +G+ R+ R AAP+SP
Sbjct: 82 VLGARVAAGPTHRLSASHSRVSSRGPVGTKP---KRPGQGRRAGARM-----RSAAPASP 133
Query: 125 ASTERPAASGGWAAPQDAPEAAGKRAL 151
+ A S + P P A R+L
Sbjct: 134 RARAARAISNQSSPPPPPPSRARSRSL 160
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 38.5 bits (88), Expect = 0.006
Identities = 50/213 (23%), Positives = 69/213 (32%), Gaps = 36/213 (16%)
Query: 45 GSPGPLTPHPCNELGPPASPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKG 104
G PGP P SPR+P P R + P P S + V E
Sbjct: 479 GEPGPQAP------SRTPSPRSPAPARVKAELSSPTPGS-----------SPVPGELGLA 521
Query: 105 QGLVRRLFLGAPRDAAPSSP----------ASTERPAASGGWAAPQDAPEAAGKRALCPT 154
L ++ P A P+S + ++ A +G A A K A C
Sbjct: 522 GALFLPQYVFGPDAAPPASEILAKMSELVHSRLQQGAGAGAGGAQTGLFPGAPKGATCFE 581
Query: 155 CSLPLSEKERFFN----YCGLERALVEVLGAERFSPQSWGADASPQAGTSPP-----PGS 205
C + S ++ YC RA + A R A A P P PG
Sbjct: 582 CEITFSNVNNYYVHKRLYCSGRRAPEDAPAARRPKAPPGPARAPPGQPAEPDAPRSSPGP 641
Query: 206 GDASDWTSSDRGVDSPGGAGGGGGSEAAGSARD 238
G + + G G GS++ GS+ D
Sbjct: 642 GAREEGAGGAATPEDGAGGRGSEGSQSPGSSVD 674
Score = 30.0 bits (66), Expect = 2.2
Identities = 39/167 (23%), Positives = 46/167 (27%), Gaps = 47/167 (28%)
Query: 115 APRDAAPSSPASTERPAASGGWAAPQDAPEAAG------------------KRALCPTCS 156
A DA SSP R +GG A P+D G R LC C+
Sbjct: 630 AEPDAPRSSPGPGAREEGAGGAATPEDGAGGRGSEGSQSPGSSVDDAEDDPSRTLCEACN 689
Query: 157 LPLSEKERFF----NYCGLERALVEVLGAERFSPQSWGADASPQ---------------- 196
+ S E + YC A P A +P
Sbjct: 690 IRFSRHETYTVHKRYYCASRHDPPPRRPAAPPGPPGPAAPPAPSPAAPVRTRRRRKLYEL 749
Query: 197 --AGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARDRRP 241
AG PPP G A +SP G G AR P
Sbjct: 750 HAAGAPPPPPPGHAP-------APESPRPGSGSGSGPGLAPARSPGP 789
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a
[Homo sapiens]
Length = 1336
Score = 38.1 bits (87), Expect = 0.008
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 9/186 (4%)
Query: 25 KAKYVKTHQVIARRQEPALRGSPGP---LTPHPCNELGPPASPRTPRPVRRGSGRRLPRP 81
K KY K ++ R++ +L+ SPG L+P P LG SP + + P
Sbjct: 803 KRKYEKPQELSGRKRASSLQTSPGSSSHLSPRP--PLGSSLSPWWRSSLTYFQQQLKPGK 860
Query: 82 DSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGWAAPQD 141
+ +F +++R K + ++ + L R F P D P +P T R + ++P
Sbjct: 861 EDKLFRKKRRSWKNAEDRMALANKPL--RRFKQEPEDELPEAPPKT-RESDHSRSSSPTA 917
Query: 142 APEAAGKRALCPTCSLPLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSP 201
P G + + K R N L R L + L E ++ A+ + Q S
Sbjct: 918 GPSTEGAEGPEEKKKVKMRRKRRLPNK-ELSRELSKELNHEIQRTENSLANENQQPIKSE 976
Query: 202 PPGSGD 207
P G+
Sbjct: 977 PESEGE 982
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 38.1 bits (87), Expect = 0.008
Identities = 54/206 (26%), Positives = 74/206 (35%), Gaps = 33/206 (16%)
Query: 7 STPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTP-HPCNELGPPASPR 65
S P RG +PS + + D T A E G PGP P P LG P P
Sbjct: 767 SQPERGPSPSLLNTISLD------TMPKFAFSSEDEGVG-PGPAGPKRPVFILGEPDPPP 819
Query: 66 TPRPVRRGSGRRLPRPDSL------IFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDA 119
PV +P+P SL + + + R + R LG PRD
Sbjct: 820 AATPV-------MPKPSSLSADTAALSHARLRSNSIGARHSTPRPLDAGRGRRLGGPRDP 872
Query: 120 APSSPASTERPAASGGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCGLERALVEVL 179
AP ++ + GG + P++A AL SL ++ + G L+ L
Sbjct: 873 APEKSRASSSGGSGGG--SGGRVPKSASVSAL----SLIITADD------GSGGPLMSPL 920
Query: 180 GAERFSPQSWGADASPQAGTSPPPGS 205
S D+SP SP GS
Sbjct: 921 SPRSLSSNPSSRDSSPSRDPSPVCGS 946
Score = 33.1 bits (74), Expect = 0.26
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 46 SPGPLTPHPCNELGPPASPRTPRPVRRG---------------SGRRLPRPDSLIFYRQK 90
SP PL HP PA R+PR +RRG +GRR P++ + ++
Sbjct: 1201 SPSPLPGHP------PAPARSPR-LRRGQSADKLGTGERLDGEAGRRTRGPEAELVVMRR 1253
Query: 91 RDCKASVNKENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGWAAP 139
S +++ K Q V+ + P++ A P S + A G A P
Sbjct: 1254 --LHLSERRDSFKKQEAVQEVSFDEPQEEATGLPTSVPQIAVEGEEAVP 1300
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 37.4 bits (85), Expect = 0.014
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 186 PQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGS 235
P + G + AG PPPG A D RG PGG G GGGS S
Sbjct: 15 PPAGGGGGAGGAGGGPPPGPPGAGD-----RGGGGPGGGGPGGGSAGGPS 59
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 37.4 bits (85), Expect = 0.014
Identities = 56/225 (24%), Positives = 74/225 (32%), Gaps = 55/225 (24%)
Query: 37 RRQEPALRGSP--------GPLTPHPCNELGPPASPRTPRPVRRGSGRRLPRPDSLIFYR 88
R PA R SP PLTPH + +GPP P P + R+ DSL
Sbjct: 439 RESSPAARPSPEKVPPVLPAPLTPHGTSPVGPPTPPPAPTDPQLTKARKQEEDDSLSDAG 498
Query: 89 QKRDCKASVNKENAKGQGLVRRLF--LGAPRDAAPSSPASTERPAASGGWAAPQDAPEAA 146
+ + E + + ++ ++F L +P + SS +T RP G D A
Sbjct: 499 TYTIETEAQDTEVEEARKMIDQVFGVLESPELSRASS--ATFRPVIRGDRDESDDGGVAQ 556
Query: 147 GKRALCPTCSLPLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTS--PPPG 204
L S PL A+PQA P PG
Sbjct: 557 RMALLQEFASRPLG--------------------------------AAPQAEHQGLPVPG 584
Query: 205 SGDASDWTS---------SDRGVDSPGGAGGGGGSEAAGSARDRR 240
S W S SD G+ G GG E + R RR
Sbjct: 585 SPGGQKWVSRWASLADSYSDPGLTEDGLGRRGGEPEGSLPVRMRR 629
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 37.4 bits (85), Expect = 0.014
Identities = 56/225 (24%), Positives = 74/225 (32%), Gaps = 55/225 (24%)
Query: 37 RRQEPALRGSP--------GPLTPHPCNELGPPASPRTPRPVRRGSGRRLPRPDSLIFYR 88
R PA R SP PLTPH + +GPP P P + R+ DSL
Sbjct: 509 RESSPAARPSPEKVPPVLPAPLTPHGTSPVGPPTPPPAPTDPQLTKARKQEEDDSLSDAG 568
Query: 89 QKRDCKASVNKENAKGQGLVRRLF--LGAPRDAAPSSPASTERPAASGGWAAPQDAPEAA 146
+ + E + + ++ ++F L +P + SS +T RP G D A
Sbjct: 569 TYTIETEAQDTEVEEARKMIDQVFGVLESPELSRASS--ATFRPVIRGDRDESDDGGVAQ 626
Query: 147 GKRALCPTCSLPLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTS--PPPG 204
L S PL A+PQA P PG
Sbjct: 627 RMALLQEFASRPLG--------------------------------AAPQAEHQGLPVPG 654
Query: 205 SGDASDWTS---------SDRGVDSPGGAGGGGGSEAAGSARDRR 240
S W S SD G+ G GG E + R RR
Sbjct: 655 SPGGQKWVSRWASLADSYSDPGLTEDGLGRRGGEPEGSLPVRMRR 699
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 37.0 bits (84), Expect = 0.018
Identities = 43/171 (25%), Positives = 61/171 (35%), Gaps = 21/171 (12%)
Query: 4 APPSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNELGPPAS 63
+PP P G + E KA+ + A R P + G + +
Sbjct: 520 SPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSC 579
Query: 64 -----PRTPRPVRRGSGRRLPRPDSLIFYRQKR---DCKASVNKENAKGQGLVRRLFLGA 115
P RP+ R SGR LP S +R + D + ++AK
Sbjct: 580 RARPRPGVSRPLERASGR-LPLARSGPVWRSEAALDDLQGLPEPQHAKP----------G 628
Query: 116 PRDAAPSSPASTERPAAS--GGWAAPQDAPEAAGKRALCPTCSLPLSEKER 164
PR A P + AAS G +PQ+A A G R CP P ++R
Sbjct: 629 PRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDR 679
Score = 32.0 bits (71), Expect = 0.59
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 115 APRDAAPSS------PASTERPAASGGWAAPQ-----------DAPEAAGKRALCPTCSL 157
AP AP S A++E PAAS AA + DA AA +R
Sbjct: 488 APSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEA 547
Query: 158 PLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSPP 202
P + ER ER E+ GA++FS S A P+ G S P
Sbjct: 548 PPAGAERAAPERKAERGGAELRGAKKFSVSS--CRARPRPGVSRP 590
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 37.0 bits (84), Expect = 0.018
Identities = 67/247 (27%), Positives = 91/247 (36%), Gaps = 34/247 (13%)
Query: 4 APPSTPSRGRTPSAVERLEADKAKYVKTHQVIARRQEP-ALRGSPGPLTPHPCNELGPPA 62
APP+ PS +P+ + KA+Y+ Q R A R P PLT E PP
Sbjct: 338 APPAAPSPPDSPAEGRLV---KAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPR 394
Query: 63 SPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAPRDAAPS 122
RP R +GRR ++ R KAS ++ G + G P+ P+
Sbjct: 395 E----RP--RAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPK--YPT 446
Query: 123 SPASTERPAASGGWAAPQDAPEAAGK-RALCPTCSLPLSEKERFFNYCGLERALVEVLGA 181
+ RP AP A +AAG R T + ++ R R V G
Sbjct: 447 AEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAAR--VPGPGP 504
Query: 182 ERFSPQSW------GADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGS 235
+PQ G+D+ AG P G RG P G GGG E+ S
Sbjct: 505 SPSAPQRRLLYGCAGSDSECSAGRLGPLGR----------RG---PAGGVGGGYGESESS 551
Query: 236 ARDRRPP 242
A + P
Sbjct: 552 ASEGESP 558
>gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
sapiens]
Length = 237
Score = 36.6 bits (83), Expect = 0.024
Identities = 48/177 (27%), Positives = 59/177 (33%), Gaps = 53/177 (29%)
Query: 41 PALRGSPGPLTPHPCNELGPPASPRTPRPVRRGSG-RRLPRPDSLIFYRQKRDCKASVNK 99
P+++G P P P E G + R+P P R+G G RRLP
Sbjct: 27 PSIQGPDRPQNPRP--EAGKDGARRSPGPTRQGQGQRRLP-------------------- 64
Query: 100 ENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGW-AAPQDAPEAAGKRALCPTCSLP 158
A QG R G PR P P GW + D P A LC
Sbjct: 65 VGASFQGWRGRQNGGLPRSEQPYRPGRWRE-----GWRSCSGDLPSAWNWFLLC------ 113
Query: 159 LSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSD 215
+ CG ALV +PQ A A P G P P W +S+
Sbjct: 114 -------LSACGCPSALV--------TPQ---APAVPSPGYVPAPSFCHPHQWAASE 152
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 36.6 bits (83), Expect = 0.024
Identities = 48/182 (26%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 37 RRQEPALRGSPGPLTPHPCNELGP-----PASPRTPRPVRRGSGRRLPRPDSLIFYRQKR 91
RR+EP + S GPL P + GP P R P+R G+G + + R
Sbjct: 225 RRKEPLRKTSMGPLGP---SSAGPAFGDSPEMVRVRLPLRSGTG------GTGLLLRSGT 275
Query: 92 DCKASVNKENAKGQ----GLVRRLFLGAPRDAAPSSPASTERPAASGGWAAPQDAPEAAG 147
+ +G G V L+ R+ S P RP+ S AA DA
Sbjct: 276 GGTGLPLRSGGRGLSSPCGDVEWLWAERKREGRRSEPL---RPSVSSSCAAVSDAAPGCR 332
Query: 148 KRALCPTCSLPLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGT----SPPP 203
+ C C+ R L R+ GA S +W A T +PPP
Sbjct: 333 SASWCSCCAKESRRSSR--QLSRLRRSPPTAPGAATSSRHAWDTTALLWLATVMAPAPPP 390
Query: 204 GS 205
GS
Sbjct: 391 GS 392
>gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo
sapiens]
Length = 237
Score = 36.6 bits (83), Expect = 0.024
Identities = 48/177 (27%), Positives = 59/177 (33%), Gaps = 53/177 (29%)
Query: 41 PALRGSPGPLTPHPCNELGPPASPRTPRPVRRGSG-RRLPRPDSLIFYRQKRDCKASVNK 99
P+++G P P P E G + R+P P R+G G RRLP
Sbjct: 27 PSIQGPDRPQNPRP--EAGKDGARRSPGPTRQGQGQRRLP-------------------- 64
Query: 100 ENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGW-AAPQDAPEAAGKRALCPTCSLP 158
A QG R G PR P P GW + D P A LC
Sbjct: 65 VGASFQGWRGRQNGGLPRSEQPYRPGRWRE-----GWRSCSGDLPSAWNWFLLC------ 113
Query: 159 LSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSD 215
+ CG ALV +PQ A A P G P P W +S+
Sbjct: 114 -------LSACGCPSALV--------TPQ---APAVPSPGYVPAPSFCHPHQWAASE 152
>gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo
sapiens]
Length = 237
Score = 36.6 bits (83), Expect = 0.024
Identities = 48/177 (27%), Positives = 59/177 (33%), Gaps = 53/177 (29%)
Query: 41 PALRGSPGPLTPHPCNELGPPASPRTPRPVRRGSG-RRLPRPDSLIFYRQKRDCKASVNK 99
P+++G P P P E G + R+P P R+G G RRLP
Sbjct: 27 PSIQGPDRPQNPRP--EAGKDGARRSPGPTRQGQGQRRLP-------------------- 64
Query: 100 ENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGW-AAPQDAPEAAGKRALCPTCSLP 158
A QG R G PR P P GW + D P A LC
Sbjct: 65 VGASFQGWRGRQNGGLPRSEQPYRPGRWRE-----GWRSCSGDLPSAWNWFLLC------ 113
Query: 159 LSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSD 215
+ CG ALV +PQ A A P G P P W +S+
Sbjct: 114 -------LSACGCPSALV--------TPQ---APAVPSPGYVPAPSFCHPHQWAASE 152
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 36.6 bits (83), Expect = 0.024
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 156 SLPLSEKERFFNYCGLERALVE---VLGAERFSPQSWGADASPQAGTSPPPGSGDASDWT 212
S+ LSE + ++ L++ ++ +L +RF P+ G P+ G G G
Sbjct: 126 SVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGR 185
Query: 213 SSDRGVDSPGGAGGGGGSEAAG 234
RG GG GGGGG G
Sbjct: 186 GGGRGGGFRGGRGGGGGGFRGG 207
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 36.6 bits (83), Expect = 0.024
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 156 SLPLSEKERFFNYCGLERALVE---VLGAERFSPQSWGADASPQAGTSPPPGSGDASDWT 212
S+ LSE + ++ L++ ++ +L +RF P+ G P+ G G G
Sbjct: 126 SVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGR 185
Query: 213 SSDRGVDSPGGAGGGGGSEAAG 234
RG GG GGGGG G
Sbjct: 186 GGGRGGGFRGGRGGGGGGFRGG 207
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 36.6 bits (83), Expect = 0.024
Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 31/142 (21%)
Query: 115 APRDAAPSSPASTERPAAS----GGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCG 170
A + +P + A+ P A+ GG A A+ R + C L L +K
Sbjct: 14 AEGEGSPPAVAAVAGPPAAAEVGGGVGGSSRARSASSPRGMVRVCDLLLKKKP------- 66
Query: 171 LERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGS 230
PQ A PP S +SD +S G GG GGGGG+
Sbjct: 67 ---------------PQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGT 111
Query: 231 EAAGSAR-----DRRPPVSVVE 247
+ S D VS VE
Sbjct: 112 SSNNSEEEEDDDDEEEEVSEVE 133
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 36.6 bits (83), Expect = 0.024
Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 31/142 (21%)
Query: 115 APRDAAPSSPASTERPAAS----GGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCG 170
A + +P + A+ P A+ GG A A+ R + C L L +K
Sbjct: 14 AEGEGSPPAVAAVAGPPAAAEVGGGVGGSSRARSASSPRGMVRVCDLLLKKKP------- 66
Query: 171 LERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGS 230
PQ A PP S +SD +S G GG GGGGG+
Sbjct: 67 ---------------PQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGT 111
Query: 231 EAAGSAR-----DRRPPVSVVE 247
+ S D VS VE
Sbjct: 112 SSNNSEEEEDDDDEEEEVSEVE 133
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 36.2 bits (82), Expect = 0.031
Identities = 49/197 (24%), Positives = 68/197 (34%), Gaps = 38/197 (19%)
Query: 50 LTPHPCNELGPPASPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVR 109
L P P SP TPRP + D + + A GQ V
Sbjct: 27 LLMRPGQRTAPAGSPTTPRP--------------------ENDPSREIGEARASGQDQV- 65
Query: 110 RLFLGAPRDAAPSSPASTERPAASGGWAAPQDAPEAAGKRALCPTC---SLPLSEKERFF 166
P AP T P AP AP + T + L E++
Sbjct: 66 -----LPTHPAPCHSYPTRLPDRHPRPPAPAPAPRERARGLRLRTVVGVAGVLVERDDLH 120
Query: 167 NYCGLERALVEVLGAERFSPQSWGADASPQAGTSPP----PGSGDASDWTSSDRGVDSPG 222
++ +V++L A + ++ GA P A + PG+G ++ S R G
Sbjct: 121 ALLAIQ-VIVQLLCA---AAEARGAATLPAAAATTTALDGPGAGGGAERGGSGRSSAGGG 176
Query: 223 GAGGGGGSEAAGSARDR 239
G GGGGG GS R R
Sbjct: 177 GGGGGGGG-GRGSRRGR 192
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 35.8 bits (81), Expect = 0.041
Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 37/143 (25%)
Query: 119 AAPSSPASTERPAASGGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCGLERALVEV 178
++PS P RP+A+ Q AG C SLPL +R F G R+L
Sbjct: 67 SSPSPPPPVRRPSAA---REQQGRQVPAGSLRDCRLASLPL---QRPFRGRGPHRSL--- 117
Query: 179 LGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARD 238
G DA+P A + PG+ D P GAGG GG G D
Sbjct: 118 -----------GCDAAPAALGNGRPGARS-----------DRPCGAGGDGGGRLPGDDDD 155
Query: 239 ----RRPPVSVVERNAR--VIQW 255
+ PP+ + R R V +W
Sbjct: 156 NDEEQPPPLPLTGRCWRDGVYRW 178
Score = 32.7 bits (73), Expect = 0.34
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 41 PALRGSPGPLTPHPCNELGPPASPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCK-ASVNK 99
P R P P P L P+SP P PVRR S R + + RDC+ AS+
Sbjct: 48 PVSRERDDPSAPRPVPAL--PSSPSPPPPVRRPSAAR-EQQGRQVPAGSLRDCRLASLPL 104
Query: 100 ENA-KGQGLVRRLFLGAPRDAAPSS------PASTERPAASGG 135
+ +G+G R L DAAP++ A ++RP +GG
Sbjct: 105 QRPFRGRGPHRSLGC----DAAPAALGNGRPGARSDRPCGAGG 143
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 35.8 bits (81), Expect = 0.041
Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 37/143 (25%)
Query: 119 AAPSSPASTERPAASGGWAAPQDAPEAAGKRALCPTCSLPLSEKERFFNYCGLERALVEV 178
++PS P RP+A+ Q AG C SLPL +R F G R+L
Sbjct: 67 SSPSPPPPVRRPSAA---REQQGRQVPAGSLRDCRLASLPL---QRPFRGRGPHRSL--- 117
Query: 179 LGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARD 238
G DA+P A + PG+ D P GAGG GG G D
Sbjct: 118 -----------GCDAAPAALGNGRPGARS-----------DRPCGAGGDGGGRLPGDDDD 155
Query: 239 ----RRPPVSVVERNAR--VIQW 255
+ PP+ + R R V +W
Sbjct: 156 NDEEQPPPLPLTGRCWRDGVYRW 178
Score = 32.7 bits (73), Expect = 0.34
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 41 PALRGSPGPLTPHPCNELGPPASPRTPRPVRRGSGRRLPRPDSLIFYRQKRDCK-ASVNK 99
P R P P P L P+SP P PVRR S R + + RDC+ AS+
Sbjct: 48 PVSRERDDPSAPRPVPAL--PSSPSPPPPVRRPSAAR-EQQGRQVPAGSLRDCRLASLPL 104
Query: 100 ENA-KGQGLVRRLFLGAPRDAAPSS------PASTERPAASGG 135
+ +G+G R L DAAP++ A ++RP +GG
Sbjct: 105 QRPFRGRGPHRSLGC----DAAPAALGNGRPGARSDRPCGAGG 143
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 35.8 bits (81), Expect = 0.041
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 190 GADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAG 234
G+ A+ AG+ PPP S ++ +SS G GGGG S A G
Sbjct: 240 GSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGG 284
Score = 28.9 bits (63), Expect = 5.0
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 113 LGAPRDAAPSS--PASTERPAASGGWAAPQDAPE------AAGKRALCPTCSLPLSEKER 164
LG P PS A ++ +GG AA A E AAG+ + P P
Sbjct: 13 LGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPP------ 66
Query: 165 FFNYCGLERALVEVLGAE-RFSPQSWGADASPQAGTSPPPGS--------GDASDWTSSD 215
+ LG E + +S G AG+ PG+ G+A + +
Sbjct: 67 ------------QPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALN 114
Query: 216 RGVDSPGGAGGGGGSEAAGS 235
+ P G GGGG S+ G+
Sbjct: 115 NNLTEPPGGGGGGSSDGVGA 134
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 35.8 bits (81), Expect = 0.041
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 190 GADASPQAGTSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAG 234
G+ A+ AG+ PPP S ++ +SS G GGGG S A G
Sbjct: 240 GSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGG 284
Score = 28.9 bits (63), Expect = 5.0
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 113 LGAPRDAAPSS--PASTERPAASGGWAAPQDAPE------AAGKRALCPTCSLPLSEKER 164
LG P PS A ++ +GG AA A E AAG+ + P P
Sbjct: 13 LGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPP------ 66
Query: 165 FFNYCGLERALVEVLGAE-RFSPQSWGADASPQAGTSPPPGS--------GDASDWTSSD 215
+ LG E + +S G AG+ PG+ G+A + +
Sbjct: 67 ------------QPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALN 114
Query: 216 RGVDSPGGAGGGGGSEAAGS 235
+ P G GGGG S+ G+
Sbjct: 115 NNLTEPPGGGGGGSSDGVGA 134
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,088,896
Number of Sequences: 37866
Number of extensions: 960644
Number of successful extensions: 8937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 7285
Number of HSP's gapped (non-prelim): 1717
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.