Guide to the Human Genome
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Name: LOC100292407 Sequence: fasta or formatted (780aa) NCBI GI: 239754979
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         80           4
 C cysteine            1.9         15           2
 D aspartate           1.7         13           1
 E glutamate           6.7         52           2
 F phenylalanine       1.7         13           1
 G glycine            10.4         81           2
 H histidine           1.8         14           1
 I isoleucine          0.8          6           1
 K lysine              1.9         15           1
 L leucine            12.1         94           3
 M methionine          1.3         10           1
 N asparagine          0.4          3           1
 P proline            10.4         81           3
 Q glutamine           2.1         16           1
 R arginine           12.9        101           3
 S serine             11.9         93           4
 T threonine           3.6         28           2
 V valine              6.0         47           2
 W tryptophan          1.9         15           1
 Y tyrosine            0.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FAM48B1               0.014   hypothetical protein LOC100130302 
FLJ22184              0.013   PREDICTED: hypothetical protein LOC80164 
LOC100293644          0.011   PREDICTED: hypothetical protein 
LOC100287563          0.011   PREDICTED: hypothetical protein 
LOC100287563          0.011   PREDICTED: hypothetical protein XP_002343733 
APC2                  0.011   adenomatosis polyposis coli 2 
LOC100292292          0.011   PREDICTED: hypothetical protein 
LOC100130174          0.011   PREDICTED: hypothetical protein 
LOC100291384          0.011   PREDICTED: hypothetical protein XP_002347156 
LOC100130174          0.011   PREDICTED: hypothetical protein 
LOC100287578          0.011   PREDICTED: hypothetical protein XP_002343004 
C6orf132              0.010   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.010   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.010   PREDICTED: hypothetical protein LOC647024 
MICALL1               0.010   molecule interacting with Rab13 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
LOC100129786          0.010   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          0.010   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          0.010   PREDICTED: hypothetical protein LOC100129786 
LOC100133915          0.009   PREDICTED: hypothetical protein 
PANK2                 0.009   pantothenate kinase 2 isoform 1 preproprotein 
AGAP2                 0.008   centaurin, gamma 1 isoform PIKE-L 
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
WNK2                  0.008   WNK lysine deficient protein kinase 2 
KIAA1522              0.008   hypothetical protein LOC57648 
NACA                  0.008   nascent polypeptide-associated complex alpha subuni...
MUC7                  0.008   mucin 7, secreted precursor 
MUC7                  0.008   mucin 7, secreted precursor 
MUC7                  0.008   mucin 7, secreted precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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