Guide to the Human Genome
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Search of human proteins with 239749310

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
sapiens]
         (95 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]           201   8e-53
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ...   201   8e-53
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ...   201   8e-53
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]           201   8e-53
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ...    39   9e-04
gi|83035136 F-box protein 31 [Homo sapiens]                            38   0.002
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi...    38   0.002
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            38   0.002
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ...    37   0.003
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ...    37   0.003
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H...    37   0.003
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H...    37   0.003
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho...    37   0.003
gi|153285461 fibroblast growth factor 2 [Homo sapiens]                 37   0.003
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H...    37   0.004
gi|239754838 PREDICTED: hypothetical protein [Homo sapiens]            37   0.004
gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo ...    37   0.004
gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo ...    37   0.004
gi|12056465 fibrillarin [Homo sapiens]                                 37   0.004
gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo ...    36   0.006
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ...    36   0.006
gi|4503119 cancer/testis antigen 1B [Homo sapiens]                     36   0.008
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]         36   0.008
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]         36   0.008
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]         36   0.008
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]            36   0.008

>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 95

 Score =  201 bits (512), Expect = 8e-53
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
          MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60

Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
          VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95


>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
          sapiens]
          Length = 95

 Score =  201 bits (512), Expect = 8e-53
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
          MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60

Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
          VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95


>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
          sapiens]
          Length = 95

 Score =  201 bits (512), Expect = 8e-53
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
          MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60

Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
          VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95


>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 95

 Score =  201 bits (512), Expect = 8e-53
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
          MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1  MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60

Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
          VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95


>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
          [Homo sapiens]
          Length = 589

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 3  RVLPRSQASRRERRPRQRQHRGRERR-----TRRDAQGPRGGGPGFRAGGR---RTPDKG 54
          R+LPR++  +R RR  QRQ    +RR      +  A G  GGG  +  GG    R P + 
Sbjct: 4  RLLPRAE--KRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRL 61

Query: 55 RPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDP 92
          +  + G   GGG    G   A+     G   GE   DP
Sbjct: 62 KTDNAGDQHGGGGGGGGGAGAA----GGGGGGENYDDP 95


>gi|83035136 F-box protein 31 [Homo sapiens]
          Length = 539

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 23/68 (33%), Positives = 29/68 (42%)

Query: 2   YRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGV 61
           +  L R     RER  +++Q  G E    R  QGPR   P         P KG  G+PG 
Sbjct: 363 FNELSRIVLEVRERVRQEQQEGGHEAGEGRGRQGPRESQPSPAQPRAEAPSKGPDGTPGE 422

Query: 62  PGGGGAEA 69
            GG   +A
Sbjct: 423 DGGEPGDA 430


>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
           sapiens]
          Length = 437

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 7   RSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRA---GGRRTPDKGRPGSPGVPG 63
           RS+   R+R+ R  + R R RR R   +  RGGG         G   PD G PG  G  G
Sbjct: 280 RSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDG 339

Query: 64  GGGAEAWG 71
             G E  G
Sbjct: 340 PDGPEEKG 347



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 7   RSQASRRER-------RPRQRQHRGRERRTRRDAQGPRGGGPG 42
           RS  S RER       R R R+H+  ER + R     RGGG G
Sbjct: 356 RSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGG 398



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 9   QASRRERRPRQRQHRG-RERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGA 67
           +  R   R R+R HR  RERR  RD    R         G R  ++GR  + G  GG   
Sbjct: 345 EKGRDRDRERRRSHRSERERRRDRDRDRDRDRE---HKRGERGSERGRDEARGGGGGQDN 401

Query: 68  EAWGPRAASRTRLAGSRDGEGGTDP 92
              G    SR     S  G+G   P
Sbjct: 402 GLEGLGNDSRDMYMESEGGDGYLAP 426


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 13  RERRPRQRQHRGRERRTR-RDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWG 71
           R R P + +   RE R R R A+ P   GPG  +   R+   GRPG PG  GG  A A  
Sbjct: 219 RVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPG-PGFHGGEKAAA-- 275

Query: 72  PRAASRTRLAGSRDGEGGTDPSA 94
           PRA           G GG +P A
Sbjct: 276 PRAPG---------GGGGRNPGA 289



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 5   LPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
           L R+  SR   RP    H G +      A  PR  G     GG R P  G  G    P  
Sbjct: 251 LSRASRSRAAGRPGPGFHGGEK------AAAPRAPG----GGGGRNP--GALGRAAPPSR 298

Query: 65  GGAEAWGPRAASRTRL-AGSRDGEGGTDPSA 94
              +AWG    +   L  G  D  G + P A
Sbjct: 299 ARQDAWGLSGCATVGLRRGDCDRAGSSQPPA 329


>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
          R RR RR+AQG R  GGG    AG      + RP     PG G   A  PRAA+     G
Sbjct: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88

Query: 83 SRDGEG 88
            DG+G
Sbjct: 89 PTDGKG 94


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 5   LPRSQASRRERRPRQRQHRGRERRTRRDAQG--------PRGGGPGFRAGGRRTPD--KG 54
           LPRS +   E    +R+  G ERR R   QG        P G     RAG RR     + 
Sbjct: 233 LPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRK 292

Query: 55  RPGSPGVPGGGGAEAWGPRAASRTRLAGS 83
           R G PGV    GA+  G R     R  GS
Sbjct: 293 RGGGPGVSPREGAQGEGVRGGVTPRARGS 321


>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
          sapiens]
          Length = 215

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
          R RR RR+AQG R  GGG    AG      + RP     PG G   A  PRAA+     G
Sbjct: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88

Query: 83 SRDGEG 88
            DG+G
Sbjct: 89 PTDGKG 94


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 5   LPRSQASRRERRPRQRQHRGRERRTRRDAQG--------PRGGGPGFRAGGRRTPD--KG 54
           LPRS +   E    +R+  G ERR R   QG        P G     RAG RR     + 
Sbjct: 327 LPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRK 386

Query: 55  RPGSPGVPGGGGAEAWGPRAASRTRLAGS 83
           R G PGV    GA+  G R     R  GS
Sbjct: 387 RGGGPGVSPREGAQGEGVRGGVTPRARGS 415


>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
          sapiens]
          Length = 215

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
          R RR RR+AQG R  GGG    AG      + RP     PG G   A  PRAA+     G
Sbjct: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88

Query: 83 SRDGEG 88
            DG+G
Sbjct: 89 PTDGKG 94


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 5   LPRSQASRRERRPRQRQHRGRERRTRRDAQG--------PRGGGPGFRAGGRRTPD--KG 54
           LPRS +   E    +R+  G ERR R   QG        P G     RAG RR     + 
Sbjct: 327 LPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRK 386

Query: 55  RPGSPGVPGGGGAEAWGPRAASRTRLAGS 83
           R G PGV    GA+  G R     R  GS
Sbjct: 387 RGGGPGVSPREGAQGEGVRGGVTPRARGS 415


>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
           sapiens]
          Length = 167

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 3   RVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGR 55
           R L R    RR ++ R R  R RERR+R   +G  GGG G   GG R  D+ R
Sbjct: 106 RELRRELYGRRRKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR 157



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)

Query: 6   PRSQASRRERRPRQRQ-HRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
           P S+  RRE   R+R+ HR R R   R +               R+ D+GR G  G  GG
Sbjct: 103 PISRELRRELYGRRRKKHRSRSRSRERRS---------------RSRDRGRGGGGGGGGG 147

Query: 65  GGAEAWGPRAASRTRLAGSR 84
           GG      R  SR R    R
Sbjct: 148 GGGRE-RDRRRSRDRERSGR 166


>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
           sapiens]
          Length = 240

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 3   RVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGR 55
           R L R    RR ++ R R  R RERR+R   +G  GGG G   GG R  D+ R
Sbjct: 179 RELRRELYGRRRKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR 230



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)

Query: 6   PRSQASRRERRPRQRQ-HRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
           P S+  RRE   R+R+ HR R R   R +               R+ D+GR G  G  GG
Sbjct: 176 PISRELRRELYGRRRKKHRSRSRSRERRS---------------RSRDRGRGGGGGGGGG 220

Query: 65  GGAEAWGPRAASRTRLAGSR 84
           GG      R  SR R    R
Sbjct: 221 GGGRE-RDRRRSRDRERSGR 239


>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
           sapiens]
          Length = 240

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 3   RVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGR 55
           R L R    RR ++ R R  R RERR+R   +G  GGG G   GG R  D+ R
Sbjct: 179 RELRRELYGRRRKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR 230



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)

Query: 6   PRSQASRRERRPRQRQ-HRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
           P S+  RRE   R+R+ HR R R   R +               R+ D+GR G  G  GG
Sbjct: 176 PISRELRRELYGRRRKKHRSRSRSRERRS---------------RSRDRGRGGGGGGGGG 220

Query: 65  GGAEAWGPRAASRTRLAGSR 84
           GG      R  SR R    R
Sbjct: 221 GGGRE-RDRRRSRDRERSGR 239


>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
          Length = 288

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 5   LPRSQASRRER-RPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTP-----DKGRPGS 58
           LPR +  R     PR R       R RR  + P G   G R  GR  P      +GR  +
Sbjct: 42  LPRRRPRRHPSVNPRSRAAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRGRGRA 101

Query: 59  PGVPG--GGGAEAWGPRAASRTRLAGSRDGEGGT 90
           P   G  G G     PRAA   R  GSR G  GT
Sbjct: 102 PERVGGRGRGRGTAAPRAAPAAR--GSRPGPAGT 133


>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
           sapiens]
          Length = 859

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 20  RQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPG--GGGAEAW 70
           R  RG+ R  +  A+G  G  PG R           PG PG PG  GGG  AW
Sbjct: 539 RSRRGKTRHRKASAKGSCGDLPGLRT----AVPPHEPGGPGSPGGLGGGPSAW 587


>gi|239754838 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 265

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 4   VLPRSQASRRERRPRQRQHR---GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
           +LPRS+A R     RQR+ +   G  R  R  A  P     G R GG     +G  G P 
Sbjct: 65  LLPRSRALRSGLSSRQRRSKEGLGPFRAPRIFAARP-SQPLGQRRGGGAKGQRGGGGPPN 123

Query: 61  VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
            P G G++  G +    T  A +    G   P AR
Sbjct: 124 PPAGQGSDTGGTKTPGTTTAAAAA-ATGSASPEAR 157


>gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo
           sapiens]
          Length = 265

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 4   VLPRSQASRRERRPRQRQHR---GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
           +LPRS+A R     RQR+ +   G  R  R  A  P     G R GG     +G  G P 
Sbjct: 65  LLPRSRALRSGLSSRQRRSKEGLGPFRAPRIFAARP-SQPLGQRRGGGAKGQRGGRGPPN 123

Query: 61  VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
            P G G++  G +    T  A +    G   P AR
Sbjct: 124 PPAGQGSDTGGTKTPGTTTAAAAA-ATGSASPEAR 157


>gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo
           sapiens]
          Length = 265

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 4   VLPRSQASRRERRPRQRQHR---GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
           +LPRS+A R     RQR+ +   G  R  R  A  P     G R GG     +G  G P 
Sbjct: 65  LLPRSRALRSGLSSRQRRSKEGLGPFRAPRIFAARP-SQPLGQRRGGGAKGQRGGRGPPN 123

Query: 61  VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
            P G G++  G +    T  A +    G   P AR
Sbjct: 124 PPAGQGSDTGGTKTPGTTTAAAAA-ATGSASPEAR 157


>gi|12056465 fibrillarin [Homo sapiens]
          Length = 321

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 21/53 (39%), Positives = 25/53 (47%)

Query: 35 GPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
          G RG G GFR  GR     G  G  G  GGGG  + G R   R    G++ G+
Sbjct: 32 GGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSGK 84



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 17 PRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAAS 76
          PR     GR     R  +G RGG  G R  G     +GR G  G  GGGG    G R   
Sbjct: 7  PRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG----GGRGGG 62

Query: 77 RTRLAGSRD-GEGG 89
               G+R  G GG
Sbjct: 63 GFHSGGNRGRGRGG 76


>gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo
          sapiens]
          Length = 102

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 8  SQASRRE-RRPRQRQHR---------GRERRTRRDAQGPRGGGPGFRAGG---RRTPDKG 54
          SQASR E  R R R  R         G  RRT+R+ +G RGGGPG    G    R   KG
Sbjct: 20 SQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKG 79

Query: 55 RPGSPGVPG 63
          R   P + G
Sbjct: 80 RNRRPPIGG 88


>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
           subunit [Homo sapiens]
          Length = 2339

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 13  RERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGV----------- 61
           RE RPR  +   +E     +A+  RG GPG   GGRR   +G P                
Sbjct: 882 REERPRPHRSHSKEAAGPPEARSERGRGPG-PEGGRRHHRRGSPEEAAEREPRRHRAHRH 940

Query: 62  --PGGGGAEAWGPRAASRT--RLAGSRDGEGGTDPSAR 95
             P    A A G R A       AG R+ E G +P+ R
Sbjct: 941 QDPSKECAGAKGERRARHRGGPRAGPREAESGEEPARR 978



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/51 (31%), Positives = 21/51 (41%)

Query: 12   RRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVP 62
            RRER  RQ + R +ERR    +   +         G R P K +P     P
Sbjct: 2099 RRERERRQERGRSQERRQPSSSSSEKQRFYSCDRFGGREPPKPKPSLSSHP 2149


>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
          Length = 180

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 44 RAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSR-------DGEGGTDP 92
          R  G  T D   PG PG+P G G  A GP  A  T   G R        G GG  P
Sbjct: 6  RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 17/59 (28%)

Query: 32 DAQGPRG----GGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDG 86
          DA GP G     GPG  AGG        PG  G  GG      GPR A   R +G   G
Sbjct: 14 DADGPGGPGIPDGPGGNAGG--------PGEAGATGGR-----GPRGAGAARASGPGGG 59


>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
          Length = 1072

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 34  QGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPS 93
           Q P GGG G  +  RR    G   S   PGGGG  A G  +    R   + +G GGT+P 
Sbjct: 184 QEPGGGGSGGES--RRA---GAADSAPYPGGGGNGASGGGSGGSKRRLDASEGGGGTNPG 238

Query: 94  AR 95
            R
Sbjct: 239 GR 240



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 36  PRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
           P GGG G   GG     +    S G   GGG    G  +    ++A + DGE
Sbjct: 207 PGGGGNGASGGGSGGSKRRLDASEG---GGGTNPGGRSSVFELQVADTPDGE 255


>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
          Length = 1200

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 34  QGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPS 93
           Q P GGG G  +  RR    G   S   PGGGG  A G  +    R   + +G GGT+P 
Sbjct: 184 QEPGGGGSGGES--RRA---GAADSAPYPGGGGNGASGGGSGGSKRRLDASEGGGGTNPG 238

Query: 94  AR 95
            R
Sbjct: 239 GR 240



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 36  PRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
           P GGG G   GG     +    S G   GGG    G  +    ++A + DGE
Sbjct: 207 PGGGGNGASGGGSGGSKRRLDASEG---GGGTNPGGRSSVFELQVADTPDGE 255


>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
          Length = 1069

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 34  QGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPS 93
           Q P GGG G  +  RR    G   S   PGGGG  A G  +    R   + +G GGT+P 
Sbjct: 184 QEPGGGGSGGES--RRA---GAADSAPYPGGGGNGASGGGSGGSKRRLDASEGGGGTNPG 238

Query: 94  AR 95
            R
Sbjct: 239 GR 240



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 36  PRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
           P GGG G   GG     +    S G   GGG    G  +    ++A + DGE
Sbjct: 207 PGGGGNGASGGGSGGSKRRLDASEG---GGGTNPGGRSSVFELQVADTPDGE 255


>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
          Length = 483

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 35 GPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGT 90
          GP GGGPG  +G  RT     PG  G  GGGG               GS  G GGT
Sbjct: 5  GPSGGGPG-GSGRARTSSFAEPGGGGGGGGGGP-------------GGSASGPGGT 46



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 24 GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGG----GAEAWGPRAASRTR 79
          G   R R  +    GGG G   GG      G    PG  GGG    GA   G  A+S   
Sbjct: 12 GGSGRARTSSFAEPGGGGGGGGGG----PGGSASGPGGTGGGKASVGAMGGGVGASSSGG 67

Query: 80 LAGSRDGEGGTDPSA 94
            G   G G   P A
Sbjct: 68 GPGGSGGGGSGGPGA 82


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,521,718
Number of Sequences: 37866
Number of extensions: 368972
Number of successful extensions: 7654
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 559
Number of HSP's that attempted gapping in prelim test: 2968
Number of HSP's gapped (non-prelim): 4259
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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