Guide to the Human Genome
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Name: LOC100287283 Sequence: fasta or formatted (95aa) NCBI GI: 239743404
Description:

PREDICTED: hypothetical protein XP_002342840

Not currently referenced in the text

Other entries for this name:
alt mRNA {95aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5          9           2
 C cysteine            0.0          0           0
 D aspartate           4.2          4           1
 E glutamate           4.2          4           1
 F phenylalanine       1.1          1           1
 G glycine            21.1         20           4
 H histidine           1.1          1           1
 I isoleucine          0.0          0           0
 K lysine              1.1          1           1
 L leucine             2.1          2           1
 M methionine          1.1          1           1
 N asparagine          0.0          0           0
 P proline            10.5         10           1
 Q glutamine           4.2          4           1
 R arginine           25.3         24           2
 S serine              6.3          6           1
 T threonine           4.2          4           1
 V valine              2.1          2           1
 W tryptophan          1.1          1           1
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342840 
LOC100292773          1.000   PREDICTED: hypothetical protein 
LOC100290063          1.000   PREDICTED: hypothetical protein XP_002346992 
LOC100287283          1.000   PREDICTED: hypothetical protein 
HNRNPL                0.080   heterogeneous nuclear ribonucleoprotein L isoform a ...
FBXO31                0.074   F-box protein 31 
SNRNP70               0.074   U1 small nuclear ribonucleoprotein 70 kDa 
LOC100127891          0.074   PREDICTED: hypothetical protein 
LOC100293985          0.068   PREDICTED: hypothetical protein 
LOC643355             0.068   PREDICTED: hypothetical protein 
LOC100289986          0.068   PREDICTED: hypothetical protein XP_002346657 
LOC643355             0.068   PREDICTED: hypothetical protein 
LOC100288009          0.068   PREDICTED: hypothetical protein XP_002342502 
LOC643355             0.068   PREDICTED: hypothetical protein 
U2AF1                 0.068   U2 small nuclear RNA auxillary factor 1 isoform c [H...
U2AF1                 0.068   U2 small nuclear RNA auxillary factor 1 isoform b [H...
U2AF1                 0.068   U2 small nuclear RNA auxillary factor 1 isoform a [Ho...
FGF2                  0.068   fibroblast growth factor 2 
MAP3K12               0.068   mitogen-activated protein kinase kinase kinase 12 [H...
LOC100293371          0.068   PREDICTED: hypothetical protein 
LOC100291490          0.068   PREDICTED: hypothetical protein XP_002347018 
LOC100287037          0.068   PREDICTED: hypothetical protein XP_002342879 
FBL                   0.068   fibrillarin 
LOC100292017          0.062   PREDICTED: hypothetical protein XP_002344620 
CACNA1B               0.062   calcium channel, voltage-dependent, N type, alpha 1B ...
CTAG1B                0.062   cancer/testis antigen 1B 
PCDH7                 0.062   protocadherin 7 isoform b precursor 
PCDH7                 0.062   protocadherin 7 isoform c precursor 
PCDH7                 0.062   protocadherin 7 isoform a precursor 
GSK3A                 0.062   glycogen synthase kinase 3 alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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