Guide to the Human Genome
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Name: LOC100287119 Sequence: fasta or formatted (231aa) NCBI GI: 239741714
Description:

PREDICTED: hypothetical protein XP_002342305

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         31           3
 C cysteine            1.3          3           1
 D aspartate           1.3          3           1
 E glutamate           4.3         10           2
 F phenylalanine       5.2         12           2
 G glycine             7.8         18           2
 H histidine           3.9          9           1
 I isoleucine          4.3         10           1
 K lysine              0.9          2           1
 L leucine            11.3         26           2
 M methionine          3.0          7           1
 N asparagine          0.9          2           1
 P proline             6.9         16           2
 Q glutamine           4.3         10           1
 R arginine            6.1         14           1
 S serine              9.1         21           1
 T threonine           3.5          8           2
 V valine              6.1         14           2
 W tryptophan          1.7          4           1
 Y tyrosine            4.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342305 
MALL                  0.483   mal, T-cell differentiation protein-like 
LOC100132330          0.327   PREDICTED: similar to mal, T-cell differentiation p...
LOC100132330          0.327   PREDICTED: similar to mal, T-cell differentiation p...
LOC100132330          0.327   PREDICTED: similar to mal, T-cell differentiation p...
MAL                   0.183   T-lymphocyte maturation-associated protein isoform a ...
MAL2                  0.149   MAL2 proteolipid protein 
CMTM8                 0.095   CKLF-like MARVEL transmembrane domain containing 8 [...
MAL                   0.081   T-lymphocyte maturation-associated protein isoform b...
LOC100288570          0.079   PREDICTED: hypothetical protein XP_002342296 
PLLP                  0.072   plasmolipin 
MAL                   0.063   T-lymphocyte maturation-associated protein isoform c...
CMTM6                 0.036   CKLF-like MARVEL transmembrane domain containing 6 [H...
EGLN1                 0.034   egl nine homolog 1 
ZNF831                0.034   zinc finger protein 831 
EID2                  0.032   CREBBP/EP300 inhibitor 2 
LOC100288606          0.027   PREDICTED: hypothetical protein XP_002342652 
LOC100292328          0.027   PREDICTED: hypothetical protein 
LOC100287025          0.027   PREDICTED: hypothetical protein 
LOC100290372          0.027   PREDICTED: hypothetical protein XP_002346788 
LOC100287025          0.027   PREDICTED: hypothetical protein XP_002344222 
CKAP4                 0.025   cytoskeleton-associated protein 4 
FGF2                  0.023   fibroblast growth factor 2 
LOC100127987          0.023   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.023   PREDICTED: hypothetical protein LOC100127987 
TRNP1                 0.023   TMF regulated nuclear protein 
C17orf65              0.023   hypothetical protein LOC339201 
IRS1                  0.020   insulin receptor substrate 1 
LOC100127987          0.020   PREDICTED: hypothetical protein LOC100127987 
TMEM88B               0.020   PREDICTED: hypothetical protein LOC643965 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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