Guide to the Human Genome
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Name: LOC100291373 Sequence: fasta or formatted (136aa) NCBI GI: 239749117
Description:

PREDICTED: hypothetical protein XP_002346917

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.4         25           4
 C cysteine            2.9          4           1
 D aspartate           1.5          2           1
 E glutamate           5.1          7           1
 F phenylalanine       3.7          5           2
 G glycine            11.0         15           4
 H histidine           0.0          0           0
 I isoleucine          0.7          1           1
 K lysine              2.2          3           1
 L leucine             7.4         10           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline             8.1         11           2
 Q glutamine           4.4          6           1
 R arginine           14.7         20           3
 S serine              7.4         10           2
 T threonine           6.6          9           3
 V valine              2.2          3           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346917 
FAM171A2              0.056   family with sequence similarity 171, member A2 [Hom...
MAGI2                 0.052   membrane associated guanylate kinase, WW and PDZ dom...
LOC100292853          0.048   PREDICTED: hypothetical protein 
LOC100288412          0.048   PREDICTED: hypothetical protein XP_002342328 
ALPK3                 0.044   alpha-kinase 3 
ASXL2                 0.044   additional sex combs like 2 
LOC100294413          0.040   PREDICTED: hypothetical protein 
AR                    0.040   androgen receptor isoform 1 
LOC147670             0.040   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.040   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.040   PREDICTED: hypothetical protein LOC147670 
ZIC2                  0.040   zinc finger protein of the cerebellum 2 
ZIC5                  0.040   zinc finger protein of the cerebellum 5 
C20orf151             0.040   hypothetical protein LOC140893 
LOC728650             0.036   PREDICTED: hypothetical protein 
ARHGEF19              0.036   Rho guanine nucleotide exchange factor (GEF) 19 [Hom...
LOC730060             0.036   PREDICTED: hypothetical protein 
LOC729570             0.036   PREDICTED: hypothetical protein 
LOC730060             0.036   PREDICTED: hypothetical protein 
LOC729570             0.036   PREDICTED: hypothetical protein 
LOC730060             0.036   PREDICTED: hypothetical protein 
LOC728650             0.036   PREDICTED: hypothetical protein 
LOC729570             0.036   PREDICTED: hypothetical protein 
EN1                   0.032   engrailed homeobox 1 
MAML2                 0.032   mastermind-like 2 
LOC645321             0.032   PREDICTED: hypothetical protein 
LOC645321             0.032   PREDICTED: hypothetical protein 
LOC100290812          0.032   PREDICTED: hypothetical protein XP_002347678 
LOC645321             0.032   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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