Guide to the Human Genome
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Name: LOC147670 Sequence: fasta or formatted (338aa) NCBI GI: 169214485
Description:

PREDICTED: hypothetical protein LOC147670

Not currently referenced in the text

Other entries for this name:
alt mRNA {338aa} PREDICTED: hypothetical protein LOC147670
alt mRNA {338aa} PREDICTED: hypothetical protein LOC147670
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         36           2
 C cysteine            1.2          4           1
 D aspartate           3.8         13           2
 E glutamate           7.4         25           2
 F phenylalanine       2.1          7           1
 G glycine             8.0         27           2
 H histidine           2.4          8           1
 I isoleucine          1.8          6           1
 K lysine              2.7          9           1
 L leucine             8.6         29           2
 M methionine          1.8          6           2
 N asparagine          1.5          5           1
 P proline            11.2         38           4
 Q glutamine           6.2         21           2
 R arginine            6.5         22           2
 S serine             10.4         35           2
 T threonine           6.5         22           2
 V valine              5.0         17           2
 W tryptophan          2.1          7           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC147670 
LOC147670             1.000   PREDICTED: hypothetical protein LOC147670 
LOC147670             1.000   PREDICTED: hypothetical protein LOC147670 
FOXC1                 0.032   forkhead box C1 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
SAMD1                 0.026   sterile alpha motif domain containing 1 
PAWR                  0.026   PRKC, apoptosis, WT1, regulator 
FUSSEL18              0.024   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.024   PREDICTED: functional smad suppressing element 18 [...
GPRIN1                0.024   G protein-regulated inducer of neurite outgrowth 1 ...
MBD6                  0.024   methyl-CpG binding domain protein 6 
FUSSEL18              0.023   PREDICTED: functional smad suppressing element 18 [...
NACA                  0.023   nascent polypeptide-associated complex alpha subuni...
MICALL1               0.023   molecule interacting with Rab13 
CNOT3                 0.023   CCR4-NOT transcription complex, subunit 3 
BCL9L                 0.021   B-cell CLL/lymphoma 9-like 
LOC100131102          0.021   PREDICTED: hypothetical protein 
ATN1                  0.021   atrophin-1 
ATN1                  0.021   atrophin-1 
RBM27                 0.021   RNA binding motif protein 27 
KCNH3                 0.021   potassium voltage-gated channel, subfamily H (eag-re...
OTOG                  0.020   PREDICTED: otogelin isoform 1 
OTOG                  0.020   PREDICTED: otogelin isoform 2 
OTOG                  0.020   PREDICTED: otogelin isoform 2 
OTOG                  0.020   PREDICTED: otogelin isoform 1 
LOC642891             0.020   PREDICTED: hypothetical protein 
OTOG                  0.020   PREDICTED: otogelin isoform 2 
OTOG                  0.020   PREDICTED: otogelin isoform 1 
LOC642891             0.020   PREDICTED: hypothetical protein 
POLR2A                0.018   DNA-directed RNA polymerase II A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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