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Search of human proteins with 239749003
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749003 PREDICTED: hypothetical protein XP_002346846 [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754461 PREDICTED: similar to hCG2029702 [Homo sapiens] 227 2e-60
gi|239749003 PREDICTED: hypothetical protein XP_002346846 [Homo ... 227 2e-60
gi|239743023 PREDICTED: hypothetical protein XP_002342696 [Homo ... 227 2e-60
gi|123173757 RAVER1 [Homo sapiens] 37 0.003
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 37 0.004
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 37 0.004
gi|32483397 dopamine receptor D4 [Homo sapiens] 36 0.006
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 34 0.029
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 34 0.029
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 33 0.049
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 33 0.049
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 33 0.049
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 33 0.049
gi|100913209 heat shock transcription factor 4 isoform b [Homo s... 33 0.049
gi|100913211 heat shock transcription factor 4 isoform a [Homo s... 33 0.049
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 33 0.064
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 33 0.064
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 33 0.064
gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo ... 32 0.11
gi|55750053 atrophin-1 [Homo sapiens] 32 0.14
gi|55750041 atrophin-1 [Homo sapiens] 32 0.14
gi|156104872 Ets2 repressor factor [Homo sapiens] 32 0.14
gi|91208420 bassoon protein [Homo sapiens] 31 0.19
gi|194097448 RELT-like 2 [Homo sapiens] 31 0.19
gi|194097446 RELT-like 2 [Homo sapiens] 31 0.19
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 31 0.19
gi|98985804 cyclin-dependent kinase inhibitor 2A isoform 3 [Homo... 31 0.24
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 31 0.24
gi|46909598 a disintegrin and metalloproteinase domain 15 isofor... 30 0.32
>gi|239754461 PREDICTED: similar to hCG2029702 [Homo sapiens]
Length = 110
Score = 227 bits (578), Expect = 2e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL
Sbjct: 1 MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
Query: 61 GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR
Sbjct: 61 GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
>gi|239749003 PREDICTED: hypothetical protein XP_002346846 [Homo
sapiens]
Length = 110
Score = 227 bits (578), Expect = 2e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL
Sbjct: 1 MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
Query: 61 GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR
Sbjct: 61 GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
>gi|239743023 PREDICTED: hypothetical protein XP_002342696 [Homo
sapiens]
Length = 110
Score = 227 bits (578), Expect = 2e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL
Sbjct: 1 MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
Query: 61 GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR
Sbjct: 61 GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/82 (37%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 31 GAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRG-PECASPRLESESGGLL 89
G PL GA+P NP LG L A GG P +P RG P P + +GG
Sbjct: 414 GDSPLGALQPGAQPANPLLGELPA------GGGLPPELPPRRGKPPPLLPSVLGPAGGDR 467
Query: 90 RAGGRAPKSA-LPPMRWPWGRR 110
A G P +A L P P G R
Sbjct: 468 EALGLGPPAAQLTPPPAPVGLR 489
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 36.6 bits (83), Expect = 0.004
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 5 SLPTVREVRRGNARGHSAGVDPLPTAGA--------QPLSVDPTGARPLNPALGVLRAPR 56
SLP R G G G TAG +PL +GARP PA + P
Sbjct: 347 SLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPP 406
Query: 57 GALLGGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP-WG 108
A+ A P R SP L+R GG A +A PP P WG
Sbjct: 407 AAVCHALAGAGAPGGRLELGLSPGTR-----LIRGGGAAVPTAAPPAPLPRWG 454
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 36.6 bits (83), Expect = 0.004
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 5 SLPTVREVRRGNARGHSAGVDPLPTAGA--------QPLSVDPTGARPLNPALGVLRAPR 56
SLP R G G G TAG +PL +GARP PA + P
Sbjct: 347 SLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPP 406
Query: 57 GALLGGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP-WG 108
A+ A P R SP L+R GG A +A PP P WG
Sbjct: 407 AAVCHALAGAGAPGGRLELGLSPGTR-----LIRGGGAAVPTAAPPAPLPRWG 454
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 36.2 bits (82), Expect = 0.006
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 26 PLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSR-GPECA--SPRLE 82
P PT A L DP G PA G+ R P G AAP +P+ GP+CA +P L
Sbjct: 244 PSPTPPAPRLPQDPCGPDCAPPAPGLPRGPCGPDC-APAAPSLPQDPCGPDCAPPAPGLP 302
Query: 83 SESGGLLRAGGRAPK-SALPPMRWPWGRR 110
+ G A A + +ALPP P RR
Sbjct: 303 PDPCGSNCAPPDAVRAAALPPQTPPQTRR 331
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 33.9 bits (76), Expect = 0.029
Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 11 EVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPR 70
+++RG + P +A A L A A G R PR A G R PR
Sbjct: 181 DIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG--RGPRRARRSG----RGPR 234
Query: 71 SRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP--WGR 109
RGPE PR E GGL G A +S P R P W R
Sbjct: 235 -RGPE-VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 273
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.029
Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 11 EVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPR 70
+++RG + P +A A L A A G R PR A G R PR
Sbjct: 144 DIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG--RGPRRARRSG----RGPR 197
Query: 71 SRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP--WGR 109
RGPE PR E GGL G A +S P R P W R
Sbjct: 198 -RGPE-VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 236
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 33.1 bits (74), Expect = 0.049
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 3 GLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGG 62
G L T + +GN + G D GA +S P G R A G LR P
Sbjct: 108 GEKLVTWANLPQGNEELPALGRD----RGAGRMS--PHGKRADGQAQGQLRLP------- 154
Query: 63 SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
+ PR P G E +PR + AGGRAP A P
Sbjct: 155 PSTPRAPDRGGCEPRAPRSQELRSWAQPAGGRAPGCAAP 193
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 33.1 bits (74), Expect = 0.049
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 17 ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
ARG + P A P P ARP P+ APR A S P P +R
Sbjct: 141 ARGDTGDTGASPPPPAGPSLARPDAARPSVPS-----APRCA----SCPPHAPLARPSAV 191
Query: 77 A-SPRLESESGGLLRAGGRAPKSALPPMRWPWG 108
A P L SGG R A + PP WP G
Sbjct: 192 AEGPGLAQASGGSWRRCPGASSAGPPP--WPRG 222
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 33.1 bits (74), Expect = 0.049
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 3 GLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGG 62
G L T + +GN + G D GA +S P G R A G LR P
Sbjct: 108 GEKLVTWANLPQGNEELPALGRD----RGAGRMS--PHGKRADGQAQGQLRLP------- 154
Query: 63 SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
+ PR P G E +PR + AGGRAP A P
Sbjct: 155 PSTPRAPDRGGCEPRAPRSQELRSWAQPAGGRAPGCAAP 193
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 33.1 bits (74), Expect = 0.049
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 17 ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
ARG + P A P P ARP P+ APR A S P P +R
Sbjct: 141 ARGDTGDTGASPPPPAGPSLARPDAARPSVPS-----APRCA----SCPPHAPLARPSAV 191
Query: 77 A-SPRLESESGGLLRAGGRAPKSALPPMRWPWG 108
A P L SGG R A + PP WP G
Sbjct: 192 AEGPGLAQASGGSWRRCPGASSAGPPP--WPRG 222
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 33.1 bits (74), Expect = 0.049
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 3 GLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGG 62
G L T + +GN + G D GA +S P G R A G LR P
Sbjct: 108 GEKLVTWANLPQGNEELPALGRD----RGAGRMS--PHGKRADGQAQGQLRLP------- 154
Query: 63 SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
+ PR P G E +PR + AGGRAP A P
Sbjct: 155 PSTPRAPDRGGCEPRAPRSQELRSWAQPAGGRAPGCAAP 193
>gi|100913209 heat shock transcription factor 4 isoform b [Homo
sapiens]
Length = 492
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 62 GSAAPRVPRS-RGPECASPRLESESGGL-LRAGGRAPKSALPPM 103
GS +P PR+ + PE PR + G L L +G R+P+S LPPM
Sbjct: 337 GSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPM 380
>gi|100913211 heat shock transcription factor 4 isoform a [Homo
sapiens]
Length = 462
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 62 GSAAPRVPRS-RGPECASPRLESESGGL-LRAGGRAPKSALPPM 103
GS +P PR+ + PE PR + G L L +G R+P+S LPPM
Sbjct: 307 GSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPM 350
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 32.7 bits (73), Expect = 0.064
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 29 TAGAQPLSVDP---TGARPLNPA----LGVLRAPRGALLGGSAAPRVPRSRGPECAS--P 79
T GA+P ++ P + ARP++PA L + P G L G +P P+ G +S P
Sbjct: 85 TGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPD-PKPGGAPTSSRRP 143
Query: 80 RLESESGG----LLRAGGRAPKSALP 101
L S S G RAGG P S+ P
Sbjct: 144 LLSSPSWGGPEPEGRAGGGIPGSSSP 169
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 32.7 bits (73), Expect = 0.064
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 28 PTAGAQPLSVD---PTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPRLESE 84
P GA P P G P PA R P+G G SA P RSR + A PR +
Sbjct: 43 PAGGASPPPSPRSRPEGPGPPRPATPSARRPQGLSAGVSAGP-AQRSRPLQLAGPRDRAP 101
Query: 85 SGGL--LRAGGRAPKSALPPMRWPWGR 109
+ L GRA + P R P R
Sbjct: 102 ARALHARTRMGRAARGPPAPSRGPLKR 128
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 18 RGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECA 77
RG G P P P S G++ + L + R +G GG++ P PRSR PE
Sbjct: 7 RGPHQGGTPRPL----PASAGAQGSQARS-GLRLCRTTQGRPAGGASPPPSPRSR-PEGP 60
Query: 78 SPRLESESGGLLRAGGRAPKSALPPMR 104
P + G A SA P R
Sbjct: 61 GPPRPATPSARRPQGLSAGVSAGPAQR 87
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 32.7 bits (73), Expect = 0.064
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 28 PTAGAQPLSVD---PTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPRLESE 84
P GA P P G P PA R P+G G SA P RSR + A PR +
Sbjct: 43 PAGGASPPPSPRSRPEGPGPPRPATPSARRPQGLSAGVSAGP-AQRSRPLQLAGPRDRAP 101
Query: 85 SGGL--LRAGGRAPKSALPPMRWPWGR 109
+ L GRA + P R P R
Sbjct: 102 ARALHARTRMGRAARGPPAPSRGPLKR 128
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 18 RGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECA 77
RG G P P P S G++ + L + R +G GG++ P PRSR PE
Sbjct: 7 RGPHQGGTPRPL----PASAGAQGSQARS-GLRLCRTTQGRPAGGASPPPSPRSR-PEGP 60
Query: 78 SPRLESESGGLLRAGGRAPKSALPPMR 104
P + G A SA P R
Sbjct: 61 GPPRPATPSARRPQGLSAGVSAGPAQR 87
>gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
sapiens]
Length = 187
Score = 32.0 bits (71), Expect = 0.11
Identities = 32/90 (35%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 23 GVDPLPTAGAQPLSVDPTGARPLNP-ALGVLRAPRGALLGGSAAPRVPRSRGPECASPRL 81
G P AGA P S + P + G L RG PR RGPE PR
Sbjct: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPR----RGPE-VWPRS 117
Query: 82 ESESGGLLRAGGRAPKSALPPMRWP--WGR 109
E GGL G A +S P R P W R
Sbjct: 118 EEGPGGLAEVRGGARRSGRGPRRGPEVWPR 147
Score = 28.1 bits (61), Expect = 1.6
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 14 RGNARGHSAGVDPLPTAGAQ-PLSVDP--TGARPLNPALGVLRAPRGALLGGSAAPRVPR 70
RG +G L TA PL D TG R + + R AA PR
Sbjct: 16 RGLLHISHSGAQALGTAVVHIPLMTDHQRTGGRAQQQGIFHVAPNRPGQRPRVAAGAWPR 75
Query: 71 SR-GPECASPRLESESGGLLRAGGRAPKSALPPMRWP--WGR 109
S GPE PR E GGL G A +S P R P W R
Sbjct: 76 SEEGPE-VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 116
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 23 GVDPLPTAGAQPLSVDPTGAR--PLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPR 80
G+DP P G L P G P +P+LG L R AL G A R S A+ R
Sbjct: 967 GLDPFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPAL-RPDMSYAERLAAER 1025
Query: 81 LESE 84
+E
Sbjct: 1026 QHAE 1029
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 23 GVDPLPTAGAQPLSVDPTGAR--PLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPR 80
G+DP P G L P G P +P+LG L R AL G A R S A+ R
Sbjct: 967 GLDPFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPAL-RPDMSYAERLAAER 1025
Query: 81 LESE 84
+E
Sbjct: 1026 QHAE 1029
>gi|156104872 Ets2 repressor factor [Homo sapiens]
Length = 548
Score = 31.6 bits (70), Expect = 0.14
Identities = 37/105 (35%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 5 SLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSA 64
S R + RG+ S G L +PL DP P P LG R P A L
Sbjct: 174 SAVVARRLGRGSVSDCSDGTSELE----EPLGEDPRARPPGPPDLGAFRGPPLARLPHDP 229
Query: 65 AP-RV-PRSR-GPECASPRLESESGGLLRAGGRAPKSALPPMRWP 106
RV PR R GPE SP S G P S LPP P
Sbjct: 230 GVFRVYPRPRGGPEPLSPFPVSPLAG--------PGSLLPPQLSP 266
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/50 (36%), Positives = 21/50 (42%)
Query: 57 GALLGGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP 106
G L G A P GP P GG L A G A +A+PP+ P
Sbjct: 14 GPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGP 63
>gi|194097448 RELT-like 2 [Homo sapiens]
Length = 303
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 19 GHSAGVDP---LPTAGAQPLSVDPTGAR--PLNPALGVLRAP---RGALLGGSAAPRVPR 70
G G DP + G QP + P R P P VL +P G L S PR
Sbjct: 194 GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALE 253
Query: 71 SRGPECASPRLESESGGLLRAGGRAPKSALP 101
+PR +E LRAGGR P LP
Sbjct: 254 G------NPRASAEP--TLRAGGRGPSPGLP 276
>gi|194097446 RELT-like 2 [Homo sapiens]
Length = 303
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 19 GHSAGVDP---LPTAGAQPLSVDPTGAR--PLNPALGVLRAP---RGALLGGSAAPRVPR 70
G G DP + G QP + P R P P VL +P G L S PR
Sbjct: 194 GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALE 253
Query: 71 SRGPECASPRLESESGGLLRAGGRAPKSALP 101
+PR +E LRAGGR P LP
Sbjct: 254 G------NPRASAEP--TLRAGGRGPSPGLP 276
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 23 GVDPLPTAGAQPLSVDP-------TGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPE 75
G + +P A +S P +G+ PL P G LR G G P PR G
Sbjct: 321 GAEAVPEAAVLEVSEPPAEAVGEASGSCPLRP--GELRGGGGGGQGAEGPPGTPRRTGKG 378
Query: 76 CASPRLESESGGLLRAGGRAPKS 98
+ + G L R G AP S
Sbjct: 379 NRRKKRAAGRGALSRGGDSAPLS 401
>gi|98985804 cyclin-dependent kinase inhibitor 2A isoform 3 [Homo
sapiens]
Length = 116
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 17 ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
ARG V L AGA P + + G RP ++ RG+ G R+ R++
Sbjct: 21 ARGRVEEVRALLEAGALPNAPNSYGRRP-------IQVGRGSAAGAGDGGRLWRTK---- 69
Query: 77 ASPRLESESGGLLRAGGRAP 96
+ LES S +LR GR P
Sbjct: 70 FAGELESGSASILRKKGRLP 89
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 18 RGHSAGVDPLPTAGAQP---LSVDPTGARPLNPALGVLRAPRGALLGGSAA-PRVPRSRG 73
R AG PLP P L T RP APRGAL G AA P+ PR
Sbjct: 134 RPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPT----APRGALRDGLAAQPQPPRPAR 189
Query: 74 PECAS 78
P C S
Sbjct: 190 PACGS 194
>gi|46909598 a disintegrin and metalloproteinase domain 15 isoform 5
preproprotein [Homo sapiens]
Length = 862
Score = 30.4 bits (67), Expect = 0.32
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 20/99 (20%)
Query: 17 ARGHSAGVDPLPTAGAQPLSVDPTG--------------ARPLNPALGVLRAPRGALLGG 62
ARG A P ++PL DP RPL PA V+R+P+ G
Sbjct: 755 ARGTKASALSFPAPPSRPLPPDPVSKRLQAELADRPNPPTRPL-PADPVVRSPKSQ---G 810
Query: 63 SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
A P PR P A P+ SG L G P +P
Sbjct: 811 PAKPPPPRK--PLPADPQGRCPSGDLPGPGAGIPPLVVP 847
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,452,730
Number of Sequences: 37866
Number of extensions: 314358
Number of successful extensions: 1757
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 321
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.