Guide to the Human Genome
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Search of human proteins with 239748874

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo
sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo ...   276   3e-75
gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo ...   276   3e-75
gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo ...   276   3e-75
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho...    34   0.027
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]    32   0.17 
gi|117414152 transcription factor 19 [Homo sapiens]                    31   0.22 
gi|117414156 transcription factor 19 [Homo sapiens]                    31   0.22 
gi|239755121 PREDICTED: hypothetical protein [Homo sapiens]            31   0.29 
gi|239749649 PREDICTED: hypothetical protein [Homo sapiens]            31   0.29 
gi|239743922 PREDICTED: hypothetical protein XP_002342991 [Homo ...    31   0.29 
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]           31   0.29 
gi|30425464 transmembrane protein 105 [Homo sapiens]                   31   0.29 
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]            30   0.38 
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    30   0.38 
gi|14993776 skeletal myosin light chain kinase [Homo sapiens]          30   0.38 
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   30   0.65 
gi|7657575 sirtuin 1 isoform a [Homo sapiens]                          29   0.85 
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]            29   0.85 
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti...    29   0.85 
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]            29   0.85 
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ...    29   0.85 
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          29   0.85 
gi|66912172 hairy and enhancer of split 3 [Homo sapiens]               29   0.85 
gi|38202224 discs large-associated protein 2 [Homo sapiens]            29   1.1  
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      28   1.5  
gi|239757898 PREDICTED: similar to testis expressed sequence 13A...    28   1.5  
gi|239752412 PREDICTED: similar to testis expressed sequence 13A...    28   1.5  
gi|239751123 PREDICTED: hypothetical protein XP_002347725 [Homo ...    28   1.5  
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]            28   1.5  
gi|169216868 PREDICTED: similar to testis expressed sequence 13A...    28   1.5  

>gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo
           sapiens]
          Length = 127

 Score =  276 bits (706), Expect = 3e-75
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
           MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER
Sbjct: 1   MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60

Query: 61  RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
           RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR
Sbjct: 61  RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120

Query: 121 ATTWDLL 127
           ATTWDLL
Sbjct: 121 ATTWDLL 127


>gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo
           sapiens]
          Length = 127

 Score =  276 bits (706), Expect = 3e-75
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
           MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER
Sbjct: 1   MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60

Query: 61  RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
           RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR
Sbjct: 61  RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120

Query: 121 ATTWDLL 127
           ATTWDLL
Sbjct: 121 ATTWDLL 127


>gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo
           sapiens]
          Length = 127

 Score =  276 bits (706), Expect = 3e-75
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
           MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER
Sbjct: 1   MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60

Query: 61  RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
           RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR
Sbjct: 61  RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120

Query: 121 ATTWDLL 127
           ATTWDLL
Sbjct: 121 ATTWDLL 127


>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
           sapiens]
          Length = 299

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 19/83 (22%)

Query: 9   GLNPPHTLEGATTLALTRGPQASPPGI---LEPREKRGR--DHGPARPRSAFFPGERRCP 63
           GL+P H    A         QASPPG+   + P  +R R    GP RP  A   G R  P
Sbjct: 146 GLSPAHRPPAA---------QASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVP 196

Query: 64  PGSLLAPDQEQGVGT-----CNC 81
            G+ + P+    V       C+C
Sbjct: 197 AGTAVTPNYVDNVSARVAPWCDC 219


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score = 31.6 bits (70), Expect = 0.17
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 27  GPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCPVAPR 86
           GP+A+ PG+ E R + GR   PA+  SA FP      P +   PD  +          PR
Sbjct: 58  GPEAAAPGLPELRAELGRAPSPAKCASA-FPAAPAFYPRAYSDPDPAKD---------PR 107

Query: 87  AGRKE 91
           A +KE
Sbjct: 108 AEKKE 112


>gi|117414152 transcription factor 19 [Homo sapiens]
          Length = 345

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 28  PQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
           P+  PP ++EPR+K   D  P  P        R+ P  + +AP    G   C  P
Sbjct: 241 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAP 295


>gi|117414156 transcription factor 19 [Homo sapiens]
          Length = 345

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 28  PQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
           P+  PP ++EPR+K   D  P  P        R+ P  + +AP    G   C  P
Sbjct: 241 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAP 295


>gi|239755121 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 339

 Score = 30.8 bits (68), Expect = 0.29
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 26  RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
           R P A+ PG    R   GR H  A  R      E R  PGS     +  G G C CP
Sbjct: 226 RAPAAARPGRRAQRAGGGRAHRQAVQRRVHLHAEAR--PGS-----ERAGCGRCRCP 275


>gi|239749649 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 339

 Score = 30.8 bits (68), Expect = 0.29
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 26  RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
           R P A+ PG    R   GR H  A  R      E R  PGS     +  G G C CP
Sbjct: 226 RAPAAARPGRRAQRAGGGRAHRQAVQRRVHLHAEAR--PGS-----ERAGCGRCRCP 275


>gi|239743922 PREDICTED: hypothetical protein XP_002342991 [Homo
           sapiens]
          Length = 339

 Score = 30.8 bits (68), Expect = 0.29
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 26  RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
           R P A+ PG    R   GR H  A  R      E R  PGS     +  G G C CP
Sbjct: 226 RAPAAARPGRRAQRAGGGRAHRQAVQRRVHLHAEAR--PGS-----ERAGCGRCRCP 275


>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
          Length = 329

 Score = 30.8 bits (68), Expect = 0.29
 Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 30  ASPPGILEPREK-RGRDHGPARPRSAFFPGERR----CPPGSLLAPDQEQGVGTCNCPVA 84
           ASP G  E   K RGRD GP R      P E+R       GS    D E G        A
Sbjct: 160 ASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGED------A 213

Query: 85  PRAGRKE 91
           PR GRK+
Sbjct: 214 PRPGRKK 220


>gi|30425464 transmembrane protein 105 [Homo sapiens]
          Length = 129

 Score = 30.8 bits (68), Expect = 0.29
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%)

Query: 10  LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58
           L PP  L+G  T      PQ SPP            + E + +R R  GPA  +S F  G
Sbjct: 43  LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97

Query: 59  ERRCPPGSL 67
                P SL
Sbjct: 98  GLHLVPSSL 106


>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 381

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 9   GLNPPHTLEGATTLALTRGPQASP----PGILEPREKRGRDHGPARPRSAFF--PGERRC 62
           G+   H   G+   A T  PQ +P    P + +P E+   +  PA PR+     P  RR 
Sbjct: 266 GVGHLHGSRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRP 325

Query: 63  PPGSLLAP 70
           PP +  +P
Sbjct: 326 PPATAPSP 333


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 9   GLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLL 68
           G  P    EGA   A    P+  P G   P     +  GP  PR    P     PP + L
Sbjct: 72  GAGPAAPAEGAPGAA----PEPPPAGRARPGGGGPQRPGPPSPRRPLVPA-GPAPPAAKL 126

Query: 69  APDQEQGVGTC 79
            P  E   G+C
Sbjct: 127 RPPPEGSAGSC 137


>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
          Length = 596

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 13  PHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQ 72
           P + +G  TLA        P G  E     G   G A P +A  P +   P  S+  P  
Sbjct: 57  PASEKGDGTLAQPSTSSQGPKG--EGDRGGGPAEGSAGPPAAL-PQQTATPETSVKKPKA 113

Query: 73  EQGVGTCNCPVAPRAGRK 90
           EQG      P  PR G+K
Sbjct: 114 EQGASGSQDPGKPRVGKK 131


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 29  QASPPGILEPREKRGRDHGPARPRSAFFPG--------ERRCPPGSLLAPDQEQGVGTCN 80
           +A PPG+  P   +G    P +P  A  PG         R  PPG   AP +   +G   
Sbjct: 51  EAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGP-- 108

Query: 81  CPVAPRAGRK 90
            P  P  G K
Sbjct: 109 -PGPPGLGGK 117


>gi|7657575 sirtuin 1 isoform a [Homo sapiens]
          Length = 747

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 26 RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCPVAP 85
          R   +SP G  EP  KR R  GP   RS   PGE    PG   AP++E       CP A 
Sbjct: 22 REAASSPAG--EPLRKRPRRDGPGLERS---PGE----PGG-AAPEREVPAAARGCPGAA 71

Query: 86 RA 87
           A
Sbjct: 72 AA 73


>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 2   PTGITYCGLNP-PHTLEGATTLALTRGPQASPP---GILEPREKRGRDHGPARPRSA 54
           P G++     P PH    A      RG +A+ P   G+++PR K   D  P R R+A
Sbjct: 269 PAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAA 325


>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
           [Homo sapiens]
          Length = 327

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13  PHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGS 66
           PH  +G+   A  RGPQ       EP+      H PA P S+ + G  +  P S
Sbjct: 206 PHASQGSQWSAWGRGPQVVGAA-WEPQAGAAAPHQPAPPESSAWQGRMQGIPAS 258


>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 2   PTGITYCGLNP-PHTLEGATTLALTRGPQASPP---GILEPREKRGRDHGPARPRSA 54
           P G++     P PH    A      RG +A+ P   G+++PR K   D  P R R+A
Sbjct: 269 PAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAA 325


>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
           sapiens]
          Length = 344

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 2   PTGITYCGLNP-PHTLEGATTLALTRGPQASPP---GILEPREKRGRDHGPARPRSA 54
           P G++     P PH    A      RG +A+ P   G+++PR K   D  P R R+A
Sbjct: 269 PAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAA 325


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 28   PQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPD 71
            P    P +  P+ ++G D GPA PR A      R PPG +L  D
Sbjct: 1542 PAVVGPAVAGPKGEKG-DVGPAGPRGATGVQGERGPPGLVLPGD 1584


>gi|66912172 hairy and enhancer of split 3 [Homo sapiens]
          Length = 186

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 51  PRSAFFP-GERRCPPG--SLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFR 107
           PR A  P G R C PG   LL    E G G   CP+ P +     +    LG+     FR
Sbjct: 60  PRGAEQPSGFRSCLPGVSQLLRRGDEVGSGL-RCPLVPESAAGSTMDSAGLGQEAPALFR 118

Query: 108 QVPSAFW 114
               A W
Sbjct: 119 PCTPAVW 125


>gi|38202224 discs large-associated protein 2 [Homo sapiens]
          Length = 975

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 8  CGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSA 54
          CGL PP   E      L  GP A PP +L P +          PRS+
Sbjct: 19 CGLAPPEDCEH-----LHHGPDARPPYLLSPADSCPGGRHRCSPRSS 60


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27  GPQASPPGILEPREKRGRDHGPARPRSAFFPGERRC--PPGS 66
           GP A PPG   P+  +G    P  P +A FPG R    PPGS
Sbjct: 849 GP-AGPPG---PQGVKGERGSPGGPGAAGFPGARGLPGPPGS 886


>gi|239757898 PREDICTED: similar to testis expressed sequence 13A
           [Homo sapiens]
          Length = 652

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 6   TYCGLNPPHTLEGATTLALTR------GPQASPPGILEPREKRGRDHGPARPRSAFFPGE 59
           +Y     P   +G  TL  +R      GP+      L       ++ GP  P+     G+
Sbjct: 473 SYSQEGSPERAQGMATLVFSRSCKPEEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGD 532

Query: 60  RRC--PPGSLLAPDQEQGVGTC--NCPVAPRAGRKERLFHTPLGESRVFEFRQVP 110
            R     GS    ++ QG+ T   +    P  G  ER   TPLG+SR    R+ P
Sbjct: 533 NRSYSQEGSR---ERAQGMATLVFSRSCKPEEG-PERPQGTPLGDSRSHGVRESP 583


>gi|239752412 PREDICTED: similar to testis expressed sequence 13A
           [Homo sapiens]
          Length = 652

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 6   TYCGLNPPHTLEGATTLALTR------GPQASPPGILEPREKRGRDHGPARPRSAFFPGE 59
           +Y     P   +G  TL  +R      GP+      L       ++ GP  P+     G+
Sbjct: 473 SYSQEGSPERAQGMATLVFSRSCKPEEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGD 532

Query: 60  RRC--PPGSLLAPDQEQGVGTC--NCPVAPRAGRKERLFHTPLGESRVFEFRQVP 110
            R     GS    ++ QG+ T   +    P  G  ER   TPLG+SR    R+ P
Sbjct: 533 NRSYSQEGSR---ERAQGMATLVFSRSCKPEEG-PERPQGTPLGDSRSHGVRESP 583


>gi|239751123 PREDICTED: hypothetical protein XP_002347725 [Homo
           sapiens]
          Length = 296

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 27  GPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCPVAPR 86
           G  A+ PG        G   G AR       G RR P     AP++ +       P APR
Sbjct: 188 GHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPP--APERSRTPDCPAAPAAPR 245

Query: 87  AGRKERLFHTPLGESRV 103
             R  R  H   G+ RV
Sbjct: 246 MRRPRRPPHRLRGQGRV 262


>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 365

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 9   GLNPPHTLEGATTLALTRGPQASP----PGILEPREKRGRDHGPARPRSAFF--PGERRC 62
           G+   H   G+   A T  PQ +P    P + +P E+   +  PA PR+     P  RR 
Sbjct: 266 GVGHLHGSRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRP 325

Query: 63  PP 64
           PP
Sbjct: 326 PP 327


>gi|169216868 PREDICTED: similar to testis expressed sequence 13A
           [Homo sapiens]
          Length = 714

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 6   TYCGLNPPHTLEGATTLALTR------GPQASPPGILEPREKRGRDHGPARPRSAFFPGE 59
           +Y     P   +G  TL  +R      GP+      L       ++ GP  P+     G+
Sbjct: 535 SYSQEGSPERAQGMATLVFSRSCKPEEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGD 594

Query: 60  RRC--PPGSLLAPDQEQGVGTC--NCPVAPRAGRKERLFHTPLGESRVFEFRQVP 110
            R     GS    ++ QG+ T   +    P  G  ER   TPLG+SR    R+ P
Sbjct: 595 NRSYSQEGSR---ERAQGMATLVFSRSCKPEEG-PERPQGTPLGDSRSHGVRESP 645


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.141    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,014,419
Number of Sequences: 37866
Number of extensions: 395857
Number of successful extensions: 1263
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 151
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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