Guide to the Human Genome
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Name: TMEM105 Sequence: fasta or formatted (129aa) NCBI GI: 30425464
Description:

transmembrane protein 105

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         11           2
 C cysteine            3.1          4           1
 D aspartate           0.8          1           1
 E glutamate           2.3          3           1
 F phenylalanine       2.3          3           1
 G glycine            13.2         17           2
 H histidine           2.3          3           1
 I isoleucine          3.1          4           1
 K lysine              3.1          4           1
 L leucine            13.2         17           2
 M methionine          2.3          3           1
 N asparagine          0.8          1           1
 P proline            10.1         13           2
 Q glutamine           3.9          5           1
 R arginine           10.9         14           4
 S serine              7.8         10           2
 T threonine           3.9          5           1
 V valine              3.9          5           2
 W tryptophan          3.9          5           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 105 
LOC100294257          0.040   PREDICTED: hypothetical protein XP_002344070 
LOC100294209          0.040   PREDICTED: hypothetical protein 
LOC100294096          0.040   PREDICTED: hypothetical protein 
CHRNA10               0.032   cholinergic receptor, nicotinic, alpha 10 
NDN                   0.024   necdin 
LOC100291708          0.024   PREDICTED: hypothetical protein XP_002345955 
LOC100290710          0.024   PREDICTED: hypothetical protein XP_002346837 
LOC100288434          0.024   PREDICTED: hypothetical protein XP_002342672 
LOC100132369          0.020   PREDICTED: hypothetical protein 
LOC100132369          0.020   PREDICTED: hypothetical protein 
LOC100132369          0.020   PREDICTED: hypothetical protein 
LOC100134348          0.020   PREDICTED: similar to TBC1 domain family, member 3 ...
CCNI2                 0.020   cyclin I family, member 2 
CASKIN1               0.016   CASK interacting protein 1 
LOC100293927          0.016   PREDICTED: hypothetical protein 
LOC100290226          0.016   PREDICTED: hypothetical protein XP_002347217 
LOC100288718          0.016   PREDICTED: hypothetical protein XP_002343085 
MAPK15                0.012   mitogen-activated protein kinase 15 
ZXDC                  0.012   ZXD family zinc finger C isoform 2 
ZXDC                  0.012   ZXD family zinc finger C isoform 1 
C17orf65              0.012   hypothetical protein LOC339201 
NBEAL2                0.012   neurobeachin-like 2 
TMEM132D              0.012   transmembrane protein 132D 
MAGEC3                0.012   melanoma antigen family C, 3 isoform 1 
MAGEC3                0.012   melanoma antigen family C, 3 isoform 2 
LPCAT4                0.008   lysophosphatidylcholine acyltransferase 4 
MN1                   0.008   meningioma  1 
SSPO                  0.008   SCO-spondin 
MUPCDH                0.008   mucin and cadherin-like isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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