Guide to the Human Genome
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Name: TCF19 Sequence: fasta or formatted (345aa) NCBI GI: 117414152
Description:

transcription factor 19

Referenced in:

Additional Cell Cycle Functions

Other entries for this name:
alt mRNA [345aa] transcription factor 19
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         28           2
 C cysteine            3.8         13           3
 D aspartate           4.3         15           2
 E glutamate           5.2         18           2
 F phenylalanine       3.5         12           1
 G glycine            10.1         35           3
 H histidine           2.3          8           1
 I isoleucine          2.6          9           1
 K lysine              2.6          9           2
 L leucine             8.7         30           2
 M methionine          1.7          6           1
 N asparagine          1.7          6           2
 P proline            13.6         47           3
 Q glutamine           4.3         15           2
 R arginine            8.7         30           2
 S serine              6.4         22           2
 T threonine           4.3         15           2
 V valine              5.5         19           1
 W tryptophan          1.2          4           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor 19 
TCF19                 1.000   transcription factor 19 
KDM5A                 0.044   retinoblastoma binding protein 2 isoform 1 
KDM5B                 0.041   jumonji, AT rich interactive domain 1B 
RAPH1                 0.030   Ras association and pleckstrin homology domains 1 is...
PHF2                  0.028   PHD finger protein 2 
WIPF1                 0.027   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.027   WAS/WASL interacting protein family, member 1 
PHF8                  0.027   PHD finger protein 8 
OGFR                  0.025   opioid growth factor receptor 
CASKIN1               0.024   CASK interacting protein 1 
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.024   Wiskott-Aldrich syndrome protein family member 1 [Hom...
COL18A1               0.024   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.024   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.024   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
DIDO1                 0.023   death inducer-obliterator 1 isoform c 
DIDO1                 0.023   death inducer-obliterator 1 isoform b 
DIDO1                 0.023   death inducer-obliterator 1 isoform a 
DIDO1                 0.023   death inducer-obliterator 1 isoform a 
BCL9L                 0.023   B-cell CLL/lymphoma 9-like 
WNK2                  0.021   WNK lysine deficient protein kinase 2 
APC2                  0.021   adenomatosis polyposis coli 2 
JHDM1D                0.021   jumonji C domain containing histone demethylase 1 ho...
WAS                   0.020   Wiskott-Aldrich syndrome protein 
BPTF                  0.020   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.020   bromodomain PHD finger transcription factor isoform ...
SRCAP                 0.020   Snf2-related CBP activator protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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