Guide to the Human Genome
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Name: LOC100291482 Sequence: fasta or formatted (296aa) NCBI GI: 239751123
Description:

PREDICTED: hypothetical protein XP_002347725

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         35           3
 C cysteine            2.4          7           1
 D aspartate           2.0          6           1
 E glutamate           4.7         14           1
 F phenylalanine       1.0          3           1
 G glycine            14.2         42           3
 H histidine           5.1         15           1
 I isoleucine          2.0          6           2
 K lysine              1.4          4           1
 L leucine            11.5         34           2
 M methionine          1.7          5           1
 N asparagine          1.0          3           1
 P proline             7.8         23           2
 Q glutamine           4.7         14           2
 R arginine           14.9         44           3
 S serine              3.7         11           2
 T threonine           1.0          3           1
 V valine              6.1         18           1
 W tryptophan          3.0          9           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347725 
LOC100293379          0.643   PREDICTED: hypothetical protein 
LOC100289592          0.643   PREDICTED: hypothetical protein XP_002344157 
LOC100290946          0.040   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.040   PREDICTED: hypothetical protein XP_002344246 
LOC100128074          0.025   PREDICTED: hypothetical protein 
TAF4                  0.025   TBP-associated factor 4 
LOC100128074          0.023   PREDICTED: hypothetical protein 
ANXA11                0.022   annexin A11 
ANXA11                0.022   annexin A11 
ANXA11                0.022   annexin A11 
SRRM1                 0.022   serine/arginine repetitive matrix 1 
LOC100293818          0.022   PREDICTED: hypothetical protein 
WDR81                 0.022   PREDICTED: WD repeat domain 81 
KIAA0368              0.022   KIAA0368 protein 
LOC100128074          0.020   PREDICTED: hypothetical protein 
LOC100128398          0.020   PREDICTED: hypothetical protein 
LOC100128398          0.020   PREDICTED: hypothetical protein 
LOC100128398          0.020   PREDICTED: hypothetical protein 
PAX1                  0.018   paired box 1 
ATXN7                 0.018   ataxin 7 isoform b 
ATXN7                 0.018   ataxin 7 isoform a 
FOXQ1                 0.017   forkhead box Q1 
FCHO1                 0.017   FCH domain only 1 isoform c 
FCHO1                 0.017   FCH domain only 1 isoform b 
FCHO1                 0.017   FCH domain only 1 isoform b 
FCHO1                 0.017   FCH domain only 1 isoform a 
LOC100131880          0.017   PREDICTED: hypothetical protein 
PRR15                 0.017   proline rich 15 
REC8                  0.017   REC8 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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