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Search of human proteins with 239748601
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748601 PREDICTED: hypothetical protein XP_002346737 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754074 PREDICTED: hypothetical protein XP_002345859 [Homo ... 213 3e-56
gi|239748601 PREDICTED: hypothetical protein XP_002346737 [Homo ... 213 3e-56
gi|239742618 PREDICTED: hypothetical protein XP_002342573 [Homo ... 213 3e-56
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 43 6e-05
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 40 3e-04
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 40 3e-04
gi|28274705 family with sequence similarity 9, member A [Homo sa... 40 4e-04
gi|5032007 purine-rich element binding protein A [Homo sapiens] 38 0.002
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 37 0.003
gi|28269693 xylosyltransferase I [Homo sapiens] 37 0.004
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 36 0.007
gi|55741655 anoctamin 8 [Homo sapiens] 35 0.010
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 35 0.010
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 35 0.010
gi|4758392 forkhead box D1 [Homo sapiens] 35 0.010
gi|160707881 formin 2 [Homo sapiens] 35 0.013
gi|158534055 round spermatid basic protein 1-like [Homo sapiens] 35 0.013
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 35 0.013
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 35 0.017
gi|4507955 YY1 transcription factor [Homo sapiens] 35 0.017
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 35 0.017
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 35 0.017
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 34 0.022
gi|51944974 tumor suppressor candidate 1 [Homo sapiens] 34 0.022
gi|224465235 euchromatic histone-lysine N-methyltransferase 1 is... 34 0.022
gi|224465233 euchromatic histone-lysine N-methyltransferase 1 is... 34 0.022
gi|89257348 homeo box HB9 [Homo sapiens] 34 0.022
gi|239747516 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo ... 34 0.028
>gi|239754074 PREDICTED: hypothetical protein XP_002345859 [Homo
sapiens]
Length = 103
Score = 213 bits (541), Expect = 3e-56
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK
Sbjct: 1 MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
Query: 61 VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD
Sbjct: 61 VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
>gi|239748601 PREDICTED: hypothetical protein XP_002346737 [Homo
sapiens]
Length = 103
Score = 213 bits (541), Expect = 3e-56
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK
Sbjct: 1 MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
Query: 61 VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD
Sbjct: 61 VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
>gi|239742618 PREDICTED: hypothetical protein XP_002342573 [Homo
sapiens]
Length = 103
Score = 213 bits (541), Expect = 3e-56
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK
Sbjct: 1 MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
Query: 61 VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD
Sbjct: 61 VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 42.7 bits (99), Expect = 6e-05
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGG 49
M + VR R+G +GGG G R GRS + GGG GGGGGGG
Sbjct: 1 MSSSVR-RKGKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGG 48
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 40.4 bits (93), Expect = 3e-04
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 16 GGAGPRIRARRGRSEEEEEEEE-----------------GGGREGGGGGGGESGSQRPVG 58
G G R R EEEEEEEE G G GGGGGGG G G
Sbjct: 23 GSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGG-----G 77
Query: 59 LKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGG 98
T S + EDE E+E+ + + +GGG
Sbjct: 78 EAETMSEPSPESASQAGEDEDEEEDDEEE-EDESSSSGGG 116
Score = 33.1 bits (74), Expect = 0.048
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 18/109 (16%)
Query: 10 GSAREGGGAG-----------PRIRARRGRSEEEEEEEEGGGREGGGGGGG--ESGSQRP 56
G GGG G P ++ G E+EEE++E E GGG ES ++
Sbjct: 66 GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESL 125
Query: 57 VGLKVTRLVQKTAS-----RKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
VG +T S + D KE + R + GGGGG
Sbjct: 126 VGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGG 174
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 27 GRSEEEEEEEEGG-GREGGGGGGGESGS 53
G +E EE +G G +GGGGGG S S
Sbjct: 152 GDGKEGLEEPKGPRGSQGGGGGGSSSSS 179
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 40.4 bits (93), Expect = 3e-04
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 16 GGAGPRIRARRGRSEEEEEEEE-----------------GGGREGGGGGGGESGSQRPVG 58
G G R R EEEEEEEE G G GGGGGGG G G
Sbjct: 23 GSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGG-----G 77
Query: 59 LKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGG 98
T S + EDE E+E+ + + +GGG
Sbjct: 78 EAETMSEPSPESASQAGEDEDEEEDDEEE-EDESSSSGGG 116
Score = 33.1 bits (74), Expect = 0.048
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 18/109 (16%)
Query: 10 GSAREGGGAG-----------PRIRARRGRSEEEEEEEEGGGREGGGGGGG--ESGSQRP 56
G GGG G P ++ G E+EEE++E E GGG ES ++
Sbjct: 66 GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESL 125
Query: 57 VGLKVTRLVQKTAS-----RKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
VG +T S + D KE + R + GGGGG
Sbjct: 126 VGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGG 174
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 27 GRSEEEEEEEEGG-GREGGGGGGGESGS 53
G +E EE +G G +GGGGGG S S
Sbjct: 152 GDGKEGLEEPKGPRGSQGGGGGGSSSSS 179
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
Query: 30 EEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKE 82
EEEE EEEGGG EG GGGG G ++T +E E+E E+E
Sbjct: 236 EEEEGEEEGGGEEGEEGGGGGEG-------------EETEEEEEEEEEEEEEE 275
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEE 37
EG GGG G EEEEEEE+
Sbjct: 248 EGEEGGGGGEGEETEEEEEEEEEEEEEEQ 276
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 28 RSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSSQR 87
+ ++E EE E E+ + + V ++ ++E E E E+E +
Sbjct: 186 QKDDEAEEAEAAAAAAEAAAAAEAAAAAAEVIVVED--EEEEEKEEEEEKEEEEEEGEEE 243
Query: 88 LKHRVKKTGGGGGGGD 103
+ GGGGG G+
Sbjct: 244 GGGEEGEEGGGGGEGE 259
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 7 AREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQ 66
A S E GGA G GGG GGGGG G G P GL+ Q
Sbjct: 2 ADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQ--HETQ 59
Query: 67 KTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
+ AS++ +++ + Q K R K G GG+
Sbjct: 60 ELASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGN 96
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 37.0 bits (84), Expect = 0.003
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
EG EG G G G E EEEE EG G E G G GE + G +
Sbjct: 894 EGEEEEGEGEG----EEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEG-----EDG 944
Query: 69 ASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGG 101
E E EWE E + + G G G
Sbjct: 945 EGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEG 977
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 10 GSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESG 52
G +E GG G+ E EEEEEEG G E G G E G
Sbjct: 805 GEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEG 847
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
EG EG G G G EEEE EEE G EG G GE + +V V+
Sbjct: 971 EGEGEEGEGEGEEEEGE-GEGEEEEGEEE-GEEEGEGEEEGEGEGEEEEEGEVEGEVEGE 1028
Query: 69 ASRKEVTEDEWEKENSSQ 86
E E+E E+E +
Sbjct: 1029 EGEGEGEEEEGEEEGEER 1046
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 6 RAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLV 65
+ R EGG EEEEE+EG G+E G G E ++ G R
Sbjct: 721 KERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEG---ERKK 777
Query: 66 QKTASRKEVTE---DEWEKENSSQRLKHRVKKTGGGGGGGD 103
++ A ++E E D+ E E + K+ GG GG+
Sbjct: 778 EERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGE 818
Score = 33.9 bits (76), Expect = 0.028
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGE 50
EG EG G G G E EEEE EG G E G G G E
Sbjct: 877 EGEEEEGEGEGEE----EGEGEGEEEEGEGEGEEEGEGEGEE 914
Score = 33.5 bits (75), Expect = 0.037
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 9 EGSAREGG----GAGPRIRARR-GRSEEEE---EEEEGGGREGGGGGGGESGSQRPVGLK 60
EG EGG G G R G EEEE EEEEG G E G G GE + G +
Sbjct: 810 EGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEE 869
Query: 61 VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
+ E E+E E E + ++ G G G
Sbjct: 870 -----EGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEG 904
Score = 33.1 bits (74), Expect = 0.048
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGG--GESGSQRPVGLKVTRLVQ 66
EG +G G G G E EEEE EG G E G G G GE + G
Sbjct: 938 EGEGEDGEGEG---EEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEG-------- 986
Query: 67 KTASRKEVTEDEWEKENSSQ 86
+ +E E+E E+E +
Sbjct: 987 EGEGEEEEGEEEGEEEGEGE 1006
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 8 REGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQK 67
RE EG G E EEEE EG G E G G GE + G
Sbjct: 826 REEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEG--------- 876
Query: 68 TASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
+E E E E+E + + + G G G+
Sbjct: 877 -EGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGE 911
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 26 RGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSS 85
+G +E +E E GG E G G E G + K K E E E EKE
Sbjct: 717 QGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGE--GKEEGEGEEVEGEREKEEGE 774
Query: 86 QRLKHRVKKTGGGGGGGD 103
++ + R K G GD
Sbjct: 775 RKKEERAGKEEKGEEEGD 792
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
EG EG G G G E EE E EG EG G G E G + ++
Sbjct: 956 EGEEEEGEGEG----EEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEG---------EEE 1002
Query: 69 ASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGG 101
+E E E E+E + ++ V+ G G G
Sbjct: 1003 GEGEEEGEGEGEEEEEGE-VEGEVEGEEGEGEG 1034
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEE------EEEEEGGGREGGGGGGGESGSQRPVG 58
EG E G G G EEE EEE EG G E G G GE + G
Sbjct: 875 EGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEG 930
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/73 (28%), Positives = 29/73 (39%)
Query: 14 EGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKE 73
EG G G E E EE EG G E G GE + G + R ++ +
Sbjct: 1008 EGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEG 1067
Query: 74 VTEDEWEKENSSQ 86
++ E+EN Q
Sbjct: 1068 KYQETGEEENERQ 1080
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
EG E G + G E EEEE E G E G GE + ++
Sbjct: 1012 EGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNR-----EEEEEEE 1066
Query: 69 ASRKEVTEDEWEKENSSQRLK 89
+E E+E E+++ + K
Sbjct: 1067 GKYQETGEEENERQDGEEYKK 1087
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 36.6 bits (83), Expect = 0.004
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 8 REGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRP 56
R G A GGG P R + E R GGGGGGG G + P
Sbjct: 45 RRGGAAVGGGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRGP 93
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 35.8 bits (81), Expect = 0.007
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 15 GGGAGPRIRAR-RGRSE------EEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQK 67
GGG +R R RGR++ E E G G GG GGG + R + R +Q+
Sbjct: 233 GGGGRAYLRPRDRGRTQASPEKLENRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQE 292
Query: 68 TASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGG 102
A + + W + GG GGGG
Sbjct: 293 GAEGGQGCSEAWATLGWA--------AAGGFGGGG 319
Score = 27.7 bits (60), Expect = 2.0
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 28 RSEEEEEEEEG-----GGREGGGGGGGESGSQ-----RPVGLKVTRLVQKTASRKEV-TE 76
R+ EE +G G R GGGGG G+ R L+ + R +
Sbjct: 184 RAVEEHAAMDGSEGVPGSRRWAGGGGGGGGATYVFRVRAGELEPLLVAAGGGGRAYLRPR 243
Query: 77 DEWEKENSSQRLKHRVKKTGGGGGGG 102
D + S ++L++R + G GG GG
Sbjct: 244 DRGRTQASPEKLENRSEAPGSGGRGG 269
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 17/96 (17%)
Query: 6 RAREGSAREGGGAGPRIRARR----GRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKV 61
R E A EGGG G RR G EEEEE G GGE G P G
Sbjct: 524 RRLEPQADEGGGGGSGGGGRRCLSGGCGAPEEEEEAALVERRRAGEGGEEGDGPPGG--- 580
Query: 62 TRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGG 97
KE ED+ E+E+ + + GG
Sbjct: 581 ----------KEEDEDDEEEEDEEEEEDEEEGEEGG 606
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 6 RAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRL 64
R R G E G P G+ E+E++EEE E GE G GL++ ++
Sbjct: 564 RRRAGEGGEEGDGPPG-----GKEEDEDDEEEEDEEEEEDEEEGEEGGLLDCGLRLKKV 617
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 29 SEEEEEEEEGGGREGGGGGG----------GESGSQRPVGLKVTRLVQKTASRKEVTEDE 78
S E +GGG GGGGGG G+ K TA+ V D
Sbjct: 674 SSEHFPSPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDP 733
Query: 79 WEKE-NSSQRLKHRVKKTGGGGGGG 102
++S R KH GGGGGGG
Sbjct: 734 LSPPLSASPRDKHPGNGGGGGGGGG 758
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 29 SEEEEEEEEGGGREGGGGGGGESG 52
S ++ G G GGGGGGG G
Sbjct: 739 SASPRDKHPGNGGGGGGGGGGAGG 762
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 29 SEEEEEEEEGGGREGGGGGGGESG 52
S ++ GGG GGGGG G G
Sbjct: 741 SPRDKHPGNGGGGGGGGGGAGGGG 764
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 38 GGGREGGGGGGGESGS 53
GGG GG GGGG S S
Sbjct: 753 GGGGGGGAGGGGPSAS 768
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 29 SEEEEEEEEGGGREGGGGGG----------GESGSQRPVGLKVTRLVQKTASRKEVTEDE 78
S E +GGG GGGGGG G+ K TA+ V D
Sbjct: 655 SSEHFPSPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDP 714
Query: 79 WEKE-NSSQRLKHRVKKTGGGGGGG 102
++S R KH GGGGGGG
Sbjct: 715 LSPPLSASPRDKHPGNGGGGGGGGG 739
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 29 SEEEEEEEEGGGREGGGGGGGESG 52
S ++ G G GGGGGGG G
Sbjct: 720 SASPRDKHPGNGGGGGGGGGGAGG 743
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 29 SEEEEEEEEGGGREGGGGGGGESG 52
S ++ GGG GGGGG G G
Sbjct: 722 SPRDKHPGNGGGGGGGGGGAGGGG 745
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 38 GGGREGGGGGGGESGS 53
GGG GG GGGG S S
Sbjct: 734 GGGGGGGAGGGGPSAS 749
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 40/80 (50%)
Query: 14 EGGGAGPRI-----RARRGRS----------EEEEEEEE--------------------- 37
EGGG GPR+ R RR RS EEEE++++
Sbjct: 38 EGGGGGPRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDILLAPPAGGSPAPPGPAPAAG 97
Query: 38 ----GGGREGGGGGGGESGS 53
GGG GG GGGG +GS
Sbjct: 98 AGAGGGGGGGGAGGGGSAGS 117
Score = 32.3 bits (72), Expect = 0.082
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 19/90 (21%)
Query: 27 GRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSSQ 86
G E+EE+EEE EGGGG G + V + R + A E+ + E E+++
Sbjct: 23 GEGEDEEDEEEEDDDEGGGG-----GPRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDI 77
Query: 87 RLKHRV--------------KKTGGGGGGG 102
L GGGGGGG
Sbjct: 78 LLAPPAGGSPAPPGPAPAAGAGAGGGGGGG 107
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 24/101 (23%)
Query: 6 RAREGSAREGGGA-----GPR-IRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGL 59
R+ + EGGG GPR + A + S ++ + G GGGGGGGESG ++
Sbjct: 10 RSAGDALHEGGGGAEDALGPRDVEATKKGSGGKKALGKHGKGGGGGGGGGESGKKK---- 65
Query: 60 KVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
K+ SR V S+ R++ + K G GG
Sbjct: 66 ------SKSDSRASVF--------SNLRIRKNLSKGKGAGG 92
>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
Length = 846
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 18 AGPRIRARRGRSEEEEEEEE---GGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEV 74
A ++RR + + E+E GG RE GG E+G +P L ++ K R
Sbjct: 151 ASANAKSRRPKEKREKERRRHGLGGAREAGGASREENGEVKP--LPRDKIKDKIKER--- 205
Query: 75 TEDEWEKENSSQRLKHRVKKTGG 97
+ E E+E ++ + +KK G
Sbjct: 206 -DKEKEREKKKHKVMNEIKKENG 227
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 11 SAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTAS 70
S+ GG GP R GGG+ GG G E G+ +G T +Q+
Sbjct: 474 SSSRGGEPGPGPLPRSLSRSNSLPHPAGGGKAGGPGVAAEPGTPFSIGRFATLTLQERRD 533
Query: 71 RKEVTEDEWEKENSSQRLKHRVKKTGGGGGG 101
R EKE+ + + G GG G
Sbjct: 534 RGA------EKEHKRYHSLGNISRGGSGGSG 558
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 23 RARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVG 58
R RG +E + G GG GG SG ++P G
Sbjct: 531 RRDRGAEKEHKRYHSLGNISRGGSGGSGSGGEKPSG 566
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 38 GGGREGGGGGGGESGSQRPVG 58
GGG GGGGGGGE+G+ P G
Sbjct: 462 GGGGGGGGGGGGEAGAVAPYG 482
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 38 GGGREGGGGGGGESGSQRPVG 58
GGG GGGGGGG G G
Sbjct: 456 GGGGGGGGGGGGGGGGGGEAG 476
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 38 GGGREGGGGGGGESG 52
GGG GGGGGGG G
Sbjct: 451 GGGGGGGGGGGGGGG 465
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 38 GGGREGGGGGGGESG 52
GGG GGGGGGG G
Sbjct: 452 GGGGGGGGGGGGGGG 466
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 38 GGGREGGGGGGGESG 52
GGG GGGGGGG G
Sbjct: 453 GGGGGGGGGGGGGGG 467
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 38 GGGREGGGGGGGESG 52
GGG GGGGGGG G
Sbjct: 454 GGGGGGGGGGGGGGG 468
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 38 GGGREGGGGGGGESG 52
GGG GGGGGGG G
Sbjct: 455 GGGGGGGGGGGGGGG 469
>gi|4507955 YY1 transcription factor [Homo sapiens]
Length = 414
Score = 34.7 bits (78), Expect = 0.017
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 27 GRSEEEEEEEE--GGGREGGGGGGGESG 52
G EEE++++E GGG GGGGG G +G
Sbjct: 42 GEEEEEDDDDEDGGGGDHGGGGGHGHAG 69
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 10 GSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGG---GGESGSQRPVGLK 60
GS+ GGG R++ G+ ++ GG GGGG G + Q+ V +K
Sbjct: 163 GSSSSGGG---RVKKGGGKKSGKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIK 213
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 32 EEEEEEGGGREGGGGGGGESGSQRPVG 58
EEEEE+ +GGGG G G G
Sbjct: 43 EEEEEDDDDEDGGGGDHGGGGGHGHAG 69
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/49 (48%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 7 AREGSAR---EGGGAGPRIRARRGRS-------EEEEEEEEGGGREGGG 45
AR AR E GGAGPR R S EE+EEEEEG R G G
Sbjct: 170 ARRDGARCGFEEGGAGPRKEHARSDSENWRSLREEQEEEEEGSWRLGAG 218
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 10 GSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVG 58
G A GGG G + A G + GG GGGGGGG +G++R G
Sbjct: 321 GLAGAGGGGGGAVGAFGGAA---------GGAGGGGGGGGGAGAERDRG 360
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 23 RARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKE 82
R+R + + + GG GG GG G S R L R + SR
Sbjct: 230 RSREAHCQSRSDLLKAGGGAGGSGGSGPSAILR---LPSYRFRYRRRSR--------SSS 278
Query: 83 NSSQRLKHRVKKTGGGGGGG 102
SS+ R GG GG G
Sbjct: 279 RSSEPSPSRDASPGGPGGPG 298
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 16 GGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASR 71
G GPR R RG +++ E+ GG R G G G S P GL R V R
Sbjct: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--SRQPLPAGLHGRRKVGSAPDR 178
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 16 GGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASR 71
G GPR R RG +++ E+ GG R G G G S P GL R V R
Sbjct: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--SRQPLPAGLHGRRKVGSAPDR 178
>gi|51944974 tumor suppressor candidate 1 [Homo sapiens]
Length = 212
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 6 RAREGSAREG---GGAGPRIRARRGRSEEEEEEEEGGGREGGGGGG-GESGSQRPVGLKV 61
R R G+ R G GG G A GR GGG GGGGG G G ++
Sbjct: 6 RMRGGATRRGSCCGGDG----AADGRGPGRSGRARGGGSPSGGGGGVGWRGRADGARQQL 61
Query: 62 -TRLVQKTASRKEV--TEDEWEKENSSQR 87
R AS E DEW+++N+ R
Sbjct: 62 EERFADLAASHLEAIRARDEWDRQNARLR 90
>gi|224465235 euchromatic histone-lysine N-methyltransferase 1
isoform 2 [Homo sapiens]
Length = 808
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 11 SAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTAS 70
+++E R + G SEEE+E + G E GG S + + +K
Sbjct: 377 TSKESMSEADRAQKMDGESEEEQESVDTGEEEEGGDESDLSSE--------SSIKKKFLK 428
Query: 71 RKEVTEDEWEKENSSQRLKHRVKKTGGGG 99
RK T+ W K +R + R K +G G
Sbjct: 429 RKGKTDSPWIKPARKRRRRSRKKPSGALG 457
>gi|224465233 euchromatic histone-lysine N-methyltransferase 1
isoform 1 [Homo sapiens]
Length = 1298
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 11 SAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTAS 70
+++E R + G SEEE+E + G E GG S + + +K
Sbjct: 377 TSKESMSEADRAQKMDGESEEEQESVDTGEEEEGGDESDLSSE--------SSIKKKFLK 428
Query: 71 RKEVTEDEWEKENSSQRLKHRVKKTGGGG 99
RK T+ W K +R + R K +G G
Sbjct: 429 RKGKTDSPWIKPARKRRRRSRKKPSGALG 457
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 34.3 bits (77), Expect = 0.022
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 21 RIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRP 56
R++ +R + +E+ +E ++GGGGG G+ G++ P
Sbjct: 293 RMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEP 328
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 21 RIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVG 58
R + + ++ +E E+++GGG G GG E G++ +G
Sbjct: 298 RSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLG 335
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 38 GGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGG 97
GGG GGG GG SGS P + + + + + K GG
Sbjct: 42 GGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGG 101
Query: 98 GGGG 101
GGGG
Sbjct: 102 GGGG 105
>gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.028
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 51/107 (47%)
Query: 17 GAGPRIRARRGR-------SEEEEEEEEGGGREG--------------GGGGGGESGSQR 55
GAG +R R+G +E+EEEEEE ++G GGG GG GS+
Sbjct: 103 GAGRSLRKRKGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRG 162
Query: 56 PVGLKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGG 102
P W+ R++ GG GGGG
Sbjct: 163 PAA--------------------WD----------RIRVNGGLGGGG 179
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGES 51
E GGG G R A R GGG GGG G G+S
Sbjct: 149 EAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDS 191
>gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo
sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.028
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 51/107 (47%)
Query: 17 GAGPRIRARRGR-------SEEEEEEEEGGGREG--------------GGGGGGESGSQR 55
GAG +R R+G +E+EEEEEE ++G GGG GG GS+
Sbjct: 103 GAGRSLRKRKGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRG 162
Query: 56 PVGLKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGG 102
P W+ R++ GG GGGG
Sbjct: 163 PAA--------------------WD----------RIRVNGGLGGGG 179
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 9 EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGES 51
E GGG G R A R GGG GGG G G+S
Sbjct: 149 EAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDS 191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,352,736
Number of Sequences: 37866
Number of extensions: 318395
Number of successful extensions: 8116
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 322
Number of HSP's that attempted gapping in prelim test: 3611
Number of HSP's gapped (non-prelim): 2949
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.