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Search of human proteins with 239748498
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo
sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo ... 416 e-117
gi|239753956 PREDICTED: hypothetical protein [Homo sapiens] 412 e-115
gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo ... 394 e-110
gi|194272180 plexin B1 [Homo sapiens] 35 0.032
gi|40254442 plexin B1 [Homo sapiens] 35 0.032
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 35 0.032
gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo ... 35 0.041
gi|21624641 calcium binding protein 4 [Homo sapiens] 35 0.041
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 34 0.092
gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo sap... 33 0.16
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 33 0.20
gi|12707580 paired-like homeobox 2b [Homo sapiens] 32 0.27
gi|126352608 elastin isoform e precursor [Homo sapiens] 32 0.35
gi|126352446 elastin isoform d precursor [Homo sapiens] 32 0.35
gi|126352322 elastin isoform c precursor [Homo sapiens] 32 0.35
gi|126352700 elastin isoform b precursor [Homo sapiens] 32 0.35
gi|126352440 elastin isoform a precursor [Homo sapiens] 32 0.35
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 32 0.35
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 32 0.35
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 32 0.35
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 32 0.35
gi|91208420 bassoon protein [Homo sapiens] 32 0.35
gi|130502140 NEZHA isoform 2 [Homo sapiens] 32 0.35
gi|122937255 NEZHA isoform 1 [Homo sapiens] 32 0.35
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 32 0.35
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 32 0.46
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 32 0.46
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 32 0.46
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 32 0.46
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 32 0.46
>gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo
sapiens]
Length = 197
Score = 416 bits (1070), Expect = e-117
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD
Sbjct: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
Query: 61 EQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
EQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP
Sbjct: 61 EQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
Query: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR
Sbjct: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
Query: 181 SAVNVDKLGQPGRAGAT 197
SAVNVDKLGQPGRAGAT
Sbjct: 181 SAVNVDKLGQPGRAGAT 197
>gi|239753956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 412 bits (1058), Expect = e-115
Identities = 195/197 (98%), Positives = 195/197 (98%)
Query: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD
Sbjct: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
Query: 61 EQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
EQRYSPCPRRGGDTGAD CPKVP AGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP
Sbjct: 61 EQRYSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
Query: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR
Sbjct: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
Query: 181 SAVNVDKLGQPGRAGAT 197
SAVNVDKLGQPGRAGAT
Sbjct: 181 SAVNVDKLGQPGRAGAT 197
>gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo
sapiens]
Length = 195
Score = 394 bits (1013), Expect = e-110
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 12 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 71
AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG
Sbjct: 10 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 69
Query: 72 GDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 131
GDTGADACPKVPGAGPEV SPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV
Sbjct: 70 GDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 129
Query: 132 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 191
AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP
Sbjct: 130 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 189
Query: 192 GRAGAT 197
GRAGAT
Sbjct: 190 GRAGAT 195
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 35.4 bits (80), Expect = 0.032
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 27 SCHLGPRQDQLLSGAVKP---ARGGCQSPGKNTGVGDEQRYSPCP-----RRGGDTGADA 78
SC GP S V P ARGG P + + +P P G + A A
Sbjct: 665 SCDAGPMVASHQSPLVSPDPPARGG---PSPSPPTAPKALATPAPDTLPVEPGAPSTATA 721
Query: 79 CPKVPGAGPEVASPHGPGAGPGR-TNYNSRHARRHDVTERTTPQS 122
PGA P + SP GP AG G ++ S + H+ +PQ+
Sbjct: 722 SDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQN 766
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 35.4 bits (80), Expect = 0.032
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 27 SCHLGPRQDQLLSGAVKP---ARGGCQSPGKNTGVGDEQRYSPCP-----RRGGDTGADA 78
SC GP S V P ARGG P + + +P P G + A A
Sbjct: 665 SCDAGPMVASHQSPLVSPDPPARGG---PSPSPPTAPKALATPAPDTLPVEPGAPSTATA 721
Query: 79 CPKVPGAGPEVASPHGPGAGPGR-TNYNSRHARRHDVTERTTPQS 122
PGA P + SP GP AG G ++ S + H+ +PQ+
Sbjct: 722 SDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQN 766
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.4 bits (80), Expect = 0.032
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 31 GPRQDQLLSGAVKPARGGCQS-PGKN--TGVGDEQRYSPCPRRGGDTGADACPKVPGAGP 87
GP L G P+ GC+ PG + GV P R GDTG D P PG
Sbjct: 1389 GPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPG 1448
Query: 88 EVASPHGPGAGPG 100
+ P G GPG
Sbjct: 1449 PIGDPGPKGFGPG 1461
Score = 27.3 bits (59), Expect = 8.6
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 48 GCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASP--HGPGAGPGR 101
G + P N G P P+ G+ G+ CP GA E P GP PGR
Sbjct: 1066 GARGPKGNKGDPASHFGPPGPK--GEPGSPGCPGHFGASGEQGLPGIQGPRGSPGR 1119
>gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo
sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.041
Identities = 47/145 (32%), Positives = 56/145 (38%), Gaps = 27/145 (18%)
Query: 9 PLSAETGELESRPAHAARSCHL--GPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSP 66
P S G R A A S L GPRQ + LS + +G Q P + VG Q
Sbjct: 228 PSSGTRGVERQRGAACALSVALSGGPRQRRALSLVWRRGQGR-QGPEPPSPVGQAQALEE 286
Query: 67 CPRRGGDTGADACPKVPGAGPEVASPHGP--GAGPGRTNYNSRHARRHDVTERTTPQSLA 124
G DT A PEV PHGP A PG+ R A R E T L
Sbjct: 287 ACECGVDT----------ARPEVGGPHGPLLVAPPGQ-----RVAVRRRHHEVTAVDDLR 331
Query: 125 DGEAGRVAED-----LC--LRAWNG 142
+A R A + +C +R W G
Sbjct: 332 AEQAARAAPETRVLRVCVRVRVWAG 356
>gi|21624641 calcium binding protein 4 [Homo sapiens]
Length = 275
Score = 35.0 bits (79), Expect = 0.041
Identities = 33/113 (29%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 48 GCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSR 107
G + K TG EQ P G+ P G GP A P PG R ++ R
Sbjct: 47 GLRGSRKRTGSSGEQTGPEAP------GSSNNPPSTGEGPAGAPPASPGPASSRQSHRHR 100
Query: 108 HARRHDVTERTTPQSL-----ADGEAGRVAEDLCLRAWNGFSRTR-GNTSHNK 154
HD +RT L D E G D A+ F R G SH +
Sbjct: 101 PDSLHDAAQRTYGPLLNRVFGKDRELGPEELDELQAAFEEFDTDRDGYISHRE 153
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 33.9 bits (76), Expect = 0.092
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 40 GAVKPARGGCQSPG-------KNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVAS- 91
G PARG S G K +GD R +P + G TG P +PG G + A
Sbjct: 885 GQQNPARGPHPSQGPIPFQQQKTPLLGDGPR-APFNQEGQSTGPP--PLIPGLGQQGAQG 941
Query: 92 ---PHGPGAGPGRTNYNSRHARRH---DVTERTTPQS 122
P PG GPG +SR H ++ER QS
Sbjct: 942 RIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQS 978
>gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo
sapiens]
Length = 500
Score = 33.1 bits (74), Expect = 0.16
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 17 LESRPAHAARSCHLGPRQDQLLSGAVKPAR------GGCQSPGKNTGVGDEQRYSPCPRR 70
L S PAH+ L PR QLLSG PA+ C P + T +G+E+ +
Sbjct: 26 LSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPTRVT-LGEERAWR---SH 81
Query: 71 GGDTGADACPKVPGAGPEVASPHGPGAG 98
G + G C AG +P G G
Sbjct: 82 GSNAGGHTCLPRRTAGAGSLTPGGERGG 109
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 32.7 bits (73), Expect = 0.20
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 44 PARGGCQ-SPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGPG 100
P R GC + G+ G Y P GG G+ P GP P+GP AG G
Sbjct: 5 PYRQGCPGAAGQAPGAPPGSYYPGPPNSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGG 62
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 22 AHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSP-CPRRGGDTGADACP 80
A AA++ G + D K A+ P G G +P C GG G +
Sbjct: 164 AAAAKNGSSGKKSDSSRDDESKEAKS--TDPDSTGGPGPNPNPTPSCGANGGGGGGPS-- 219
Query: 81 KVPGAGPEVASPHGPGAGPGR 101
P P A P GPG PG+
Sbjct: 220 --PAGAPGAAGPGGPGGEPGK 238
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 32.0 bits (71), Expect = 0.35
Identities = 28/72 (38%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 39 SGAVKPARGGCQSPGKNTGVGDEQRYS----PCPRRGG-------DTGADACPKVPGAGP 87
+GAV P G PGK GVG Y P R G TGA PK PG G
Sbjct: 125 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 184
Query: 88 EVASPHGPGAGP 99
A PG GP
Sbjct: 185 AFAGI--PGVGP 194
Score = 27.7 bits (60), Expect = 6.6
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 40 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGP 99
G V A G P TGVG + + + GA A +PG G P PGA P
Sbjct: 233 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVG-GAGVPGVPGAIP 290
Query: 100 G 100
G
Sbjct: 291 G 291
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 32.0 bits (71), Expect = 0.35
Identities = 30/81 (37%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 30 LGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYS----PCPRRGG-------DTGADA 78
LG + GAV P G PGK GVG Y P R G TGA
Sbjct: 121 LGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGV 180
Query: 79 CPKVPGAGPEVASPHGPGAGP 99
PK PG G A PG GP
Sbjct: 181 KPKAPGVGGAFAGI--PGVGP 199
Score = 27.7 bits (60), Expect = 6.6
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 40 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGP 99
G V A G P TGVG + + + GA A +PG G P PGA P
Sbjct: 238 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVG-GAGVPGVPGAIP 295
Query: 100 G 100
G
Sbjct: 296 G 296
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 32.0 bits (71), Expect = 0.35
Identities = 30/81 (37%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 30 LGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYS----PCPRRGG-------DTGADA 78
LG + GAV P G PGK GVG Y P R G TGA
Sbjct: 121 LGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGV 180
Query: 79 CPKVPGAGPEVASPHGPGAGP 99
PK PG G A PG GP
Sbjct: 181 KPKAPGVGGAFAGI--PGVGP 199
Score = 27.7 bits (60), Expect = 6.6
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 40 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGP 99
G V A G P TGVG + + + GA A +PG G P PGA P
Sbjct: 238 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVG-GAGVPGVPGAIP 295
Query: 100 G 100
G
Sbjct: 296 G 296
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 32.0 bits (71), Expect = 0.35
Identities = 28/72 (38%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 39 SGAVKPARGGCQSPGKNTGVGDEQRYS----PCPRRGG-------DTGADACPKVPGAGP 87
+GAV P G PGK GVG Y P R G TGA PK PG G
Sbjct: 115 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 174
Query: 88 EVASPHGPGAGP 99
A PG GP
Sbjct: 175 AFAGI--PGVGP 184
Score = 27.7 bits (60), Expect = 6.6
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 40 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGP 99
G V A G P TGVG + + + GA A +PG G P PGA P
Sbjct: 223 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVG-GAGVPGVPGAIP 280
Query: 100 G 100
G
Sbjct: 281 G 281
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 32.0 bits (71), Expect = 0.35
Identities = 28/72 (38%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 39 SGAVKPARGGCQSPGKNTGVGDEQRYS----PCPRRGG-------DTGADACPKVPGAGP 87
+GAV P G PGK GVG Y P R G TGA PK PG G
Sbjct: 125 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 184
Query: 88 EVASPHGPGAGP 99
A PG GP
Sbjct: 185 AFAGI--PGVGP 194
Score = 27.7 bits (60), Expect = 6.6
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 40 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGP 99
G V A G P TGVG + + + GA A +PG G P PGA P
Sbjct: 233 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVG-GAGVPGVPGAIP 290
Query: 100 G 100
G
Sbjct: 291 G 291
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 32.0 bits (71), Expect = 0.35
Identities = 30/99 (30%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 46 RGGCQSPGKNTGVGD--------EQRYSPCPRRGGDTGADACPKVPGAG--PEVASPHGP 95
RGG PGKN G+ E P G+ G D P PGA P A G
Sbjct: 428 RGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA 487
Query: 96 GAGPGRTNYNSRHARRHDVTERTTPQSL----ADGEAGR 130
G N + ER P A GE GR
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGR 526
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 52 PGKNTGVGDEQRYSPCPRRG--GDTGADACPKVPGAGPEVASPHGPGA 97
PG+ G+ P RG G+ G D P PG SP GPG+
Sbjct: 500 PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547
Score = 29.3 bits (64), Expect = 2.3
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 31 GPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVA 90
GP ++ G P RG PG++ GV P G G+D P PG+ E
Sbjct: 504 GPAGERGAPGPAGP-RGAAGEPGRD-GVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 561
Query: 91 SPHGPG-AGP 99
P PG +GP
Sbjct: 562 RPGPPGPSGP 571
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.0 bits (71), Expect = 0.35
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 22 AHAARSCHLGPRQDQLLSGAVK-PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACP 80
A A + GP+ + G P RG P +++ +QR P R G G P
Sbjct: 126 AGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSA---QQRRRPTRRPRGTRGGARRP 182
Query: 81 KVPGAGPEVASPHGP---GAGPGR 101
V G G P GP GA P R
Sbjct: 183 GVRGQGAAAVGPTGPRPTGAPPSR 206
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.0 bits (71), Expect = 0.35
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 22 AHAARSCHLGPRQDQLLSGAVK-PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACP 80
A A + GP+ + G P RG P +++ +QR P R G G P
Sbjct: 126 AGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSA---QQRRRPTRRPRGTRGGARRP 182
Query: 81 KVPGAGPEVASPHGP---GAGPGR 101
V G G P GP GA P R
Sbjct: 183 GVRGQGAAAVGPTGPRPTGAPPSR 206
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.0 bits (71), Expect = 0.35
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 22 AHAARSCHLGPRQDQLLSGAVK-PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACP 80
A A + GP+ + G P RG P +++ +QR P R G G P
Sbjct: 126 AGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSA---QQRRRPTRRPRGTRGGARRP 182
Query: 81 KVPGAGPEVASPHGP---GAGPGR 101
V G G P GP GA P R
Sbjct: 183 GVRGQGAAAVGPTGPRPTGAPPSR 206
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.0 bits (71), Expect = 0.35
Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 44 PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGA------DACPKVPGAGPEVASPHGPGA 97
P G PG G G + S P GG A A P VPG GP GPG
Sbjct: 17 PPGGAGPGPGPGPGPGAGKPPS-APAGGGQLPAAGAARSTAVPPVPGPGP----GPGPGP 71
Query: 98 GPGRTN 103
GPG T+
Sbjct: 72 GPGSTS 77
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 32.0 bits (71), Expect = 0.35
Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 7 KRPLSAETGELESRPAHAARSCHLGPRQDQLL---SGAVKPARGGCQSPGKNTG--VGDE 61
+RP GE SRP S LGP + L + AV S ++ +
Sbjct: 665 ERPAGEGQGEPTSRPKAVTFSPDLGPVPHEGLGEYNRAVSKLSAALSSLQRDMQRLTDQQ 724
Query: 62 QRYSPCPRRGGDTGADACPKVPG--AGPEVASP----------HGPGAGPGRTNYNSRHA 109
QR P G A +PG GP+ ASP PG GP ++ + +H
Sbjct: 725 QRLLAPPEAPGSAPPPAAWVIPGPTTGPKAASPSPARRVPATRRSPGPGPSQSPRSPKHT 784
Query: 110 R 110
R
Sbjct: 785 R 785
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 32.0 bits (71), Expect = 0.35
Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 7 KRPLSAETGELESRPAHAARSCHLGPRQDQLL---SGAVKPARGGCQSPGKNTG--VGDE 61
+RP GE SRP S LGP + L + AV S ++ +
Sbjct: 692 ERPAGEGQGEPTSRPKAVTFSPDLGPVPHEGLGEYNRAVSKLSAALSSLQRDMQRLTDQQ 751
Query: 62 QRYSPCPRRGGDTGADACPKVPG--AGPEVASP----------HGPGAGPGRTNYNSRHA 109
QR P G A +PG GP+ ASP PG GP ++ + +H
Sbjct: 752 QRLLAPPEAPGSAPPPAAWVIPGPTTGPKAASPSPARRVPATRRSPGPGPSQSPRSPKHT 811
Query: 110 R 110
R
Sbjct: 812 R 812
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 32.0 bits (71), Expect = 0.35
Identities = 40/143 (27%), Positives = 52/143 (36%), Gaps = 28/143 (19%)
Query: 7 KRPLSAETGELESRPAH-----------AARSCHLGPRQDQLLSGAVKPARGGCQSPGKN 55
KRPL+A + + PAH AA + L R L +++ GG + G
Sbjct: 126 KRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGE 185
Query: 56 TGVGDEQRYSPCPRRGG-DTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDV 114
+P GG TG GAG +VA P G A PG R AR
Sbjct: 186 VA-------APAAGLGGAGTG--------GAGGDVAGPAGATAIPGARKVPLR-ARNLPP 229
Query: 115 TERTTPQSLADGEAGRVAEDLCL 137
+ T P G G D+ L
Sbjct: 230 SFFTEPSRAGGGGCGPSGPDVSL 252
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 31.6 bits (70), Expect = 0.46
Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 12 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 71
AE R + RS L P L S + A GG +S G D + P G
Sbjct: 32 AEEEGAGGRQDPSRRSIRLRP----LPSPSPSAAAGGTESRSSALGAADSE--GPARGAG 85
Query: 72 GDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEA 128
+ C + G+ +AS G G G T S H HD E + +A+G+A
Sbjct: 86 KSSTNGDCRRFRGS---LASLGSRGGGSGGTGSGSSHGHLHDSAEER--RLIAEGDA 137
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 31.6 bits (70), Expect = 0.46
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 7 KRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSP 66
K+ E E + P AAR PR ++ G +P G S + G+ +
Sbjct: 1306 KKQRLGEQRERSASPQRAAR-----PRLEEAPGGQGRPEAGRPASEARAPGLAAADA-AD 1359
Query: 67 CPRRGGD------TGADACPKV-PGAGPEVASPHGPGAG 98
R GG G++ C + PGA P A P G G+G
Sbjct: 1360 AARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSG 1398
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 31.6 bits (70), Expect = 0.46
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 67 CPRRGGDTGADACPKVPGA--GPEVASPHGPGAG--PGRTNYNSRH 108
CP + G+ G P +PGA P VA P GPG PG + H
Sbjct: 722 CPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEH 767
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 31.6 bits (70), Expect = 0.46
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 67 CPRRGGDTGADACPKVPGA--GPEVASPHGPGAG--PGRTNYNSRH 108
CP + G+ G P +PGA P VA P GPG PG + H
Sbjct: 722 CPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEH 767
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 31.6 bits (70), Expect = 0.46
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 67 CPRRGGDTGADACPKVPGA--GPEVASPHGPGAG--PGRTNYNSRH 108
CP + G+ G P +PGA P VA P GPG PG + H
Sbjct: 722 CPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEH 767
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,903,007
Number of Sequences: 37866
Number of extensions: 565797
Number of successful extensions: 2269
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 2051
Number of HSP's gapped (non-prelim): 352
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.