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Search of human proteins with 239748337
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo
sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo ... 397 e-111
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 47 7e-06
gi|19924099 synapsin I isoform Ia [Homo sapiens] 46 2e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 46 2e-05
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-05
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 45 3e-05
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 45 3e-05
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 44 8e-05
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 44 8e-05
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 44 8e-05
gi|169202296 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|169202970 PREDICTED: hypothetical protein [Homo sapiens] 43 1e-04
gi|169203510 PREDICTED: hypothetical protein [Homo sapiens] 43 1e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 43 1e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 43 1e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 43 1e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 43 2e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 42 4e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 41 5e-04
gi|7662162 ALEX2 protein [Homo sapiens] 41 7e-04
gi|29540562 ALEX2 protein [Homo sapiens] 41 7e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.002
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.002
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 39 0.003
gi|239754399 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239748964 PREDICTED: hypothetical protein XP_002346869 [Homo ... 39 0.003
gi|239742984 PREDICTED: hypothetical protein XP_002342711 [Homo ... 39 0.003
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 37 0.008
>gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo
sapiens]
Length = 189
Score = 397 bits (1021), Expect = e-111
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MGGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRP 60
MGGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRP
Sbjct: 1 MGGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRP 60
Query: 61 FLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASG 120
FLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASG
Sbjct: 61 FLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASG 120
Query: 121 RPPELAPARSGAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPALSYL 180
RPPELAPARSGAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPALSYL
Sbjct: 121 RPPELAPARSGAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPALSYL 180
Query: 181 RRREGAAAG 189
RRREGAAAG
Sbjct: 181 RRREGAAAG 189
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 47.4 bits (111), Expect = 7e-06
Identities = 48/183 (26%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 2 GGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPF 61
GG GPV PR + GP PPP W P G + GP P+
Sbjct: 656 GGPGGPV--------GPR---LLGPPPPPRGGDPFWDGPGD-PMRGGPMRGGPGPGPGPY 703
Query: 62 LPGVAHPRTHRQTGPARVTRSAKAGY-------------GLRVGSGPY------GRPRGN 102
G + P R A+ G G VG G + G GN
Sbjct: 704 HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGN 763
Query: 103 AGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGE 162
+ + E P + RP E G G G RP+ G G+ G +G G G
Sbjct: 764 SSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGM 823
Query: 163 GTG 165
G G
Sbjct: 824 GAG 826
Score = 42.0 bits (97), Expect = 3e-04
Identities = 54/189 (28%), Positives = 63/189 (33%), Gaps = 27/189 (14%)
Query: 1 MGGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTA----------GAGF 50
M GG GP + R R P PPP R + P G G
Sbjct: 692 MRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGH 751
Query: 51 QAETGPRRRPFLPGVAHPRTHR-QTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVW 109
+ GP G+ + HR GP G G R GP G G G +
Sbjct: 752 RPHEGPGG-----GMGNSSGHRPHEGPG-----GGMGSGHRPHEGP-GGSMGGGGGHRPH 800
Query: 110 EKPASEASA-SGRPPELAPARS-GAGQGRRPNGGDRQGLG--AGRDKHTTDGAGPGEGTG 165
E P S SG P P GAG G RP+ G +G G H G G G
Sbjct: 801 EGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHR 860
Query: 166 PKKLLPGPR 174
P +PG R
Sbjct: 861 PHD-VPGHR 868
Score = 31.2 bits (69), Expect = 0.56
Identities = 30/113 (26%), Positives = 33/113 (29%), Gaps = 17/113 (15%)
Query: 63 PGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRP 122
PG H GP G G VG G P G + W+ P G P
Sbjct: 634 PGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGP-------GDP 686
Query: 123 PELAPARSGAGQGRRPNGGDRQGLGAGRD----------KHTTDGAGPGEGTG 165
P R G G G P R G G + G GP G G
Sbjct: 687 MRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 739
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 45.8 bits (107), Expect = 2e-05
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 16 RAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHP-RTHRQT 74
+A R+ + GPAPP A AP G Q GP ++P PG A P R Q
Sbjct: 562 QATRQTSVSGPAPPK---------ASGAPPGG---QQRQGPPQKP--PGPAGPTRQASQA 607
Query: 75 GPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPP 123
GP T G GP GRP+ Q+ + P +A+G PP
Sbjct: 608 GPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPP 656
Score = 32.0 bits (71), Expect = 0.33
Identities = 39/152 (25%), Positives = 51/152 (33%), Gaps = 39/152 (25%)
Query: 28 PPPLAWGRVWAAAESAPTAGAGFQAET---GPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
P P + + A+ + PT G G Q+ GP P A P RQ GP + TR
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTS 568
Query: 85 AGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDRQ 144
SGP + ASG PP G++ G ++
Sbjct: 569 V-------SGP------------------APPKASGAPPG----------GQQRQGPPQK 593
Query: 145 GLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPA 176
G AGP TGP PRP+
Sbjct: 594 PPGPAGPTRQASQAGPVPRTGP-PTTQQPRPS 624
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 45.8 bits (107), Expect = 2e-05
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 16 RAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHP-RTHRQT 74
+A R+ + GPAPP A AP G Q GP ++P PG A P R Q
Sbjct: 562 QATRQTSVSGPAPPK---------ASGAPPGG---QQRQGPPQKP--PGPAGPTRQASQA 607
Query: 75 GPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPP 123
GP T G GP GRP+ Q+ + P +A+G PP
Sbjct: 608 GPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPP 656
Score = 32.0 bits (71), Expect = 0.33
Identities = 39/152 (25%), Positives = 51/152 (33%), Gaps = 39/152 (25%)
Query: 28 PPPLAWGRVWAAAESAPTAGAGFQAET---GPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
P P + + A+ + PT G G Q+ GP P A P RQ GP + TR
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTS 568
Query: 85 AGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDRQ 144
SGP + ASG PP G++ G ++
Sbjct: 569 V-------SGP------------------APPKASGAPPG----------GQQRQGPPQK 593
Query: 145 GLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPA 176
G AGP TGP PRP+
Sbjct: 594 PPGPAGPTRQASQAGPVPRTGP-PTTQQPRPS 624
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 45.4 bits (106), Expect = 3e-05
Identities = 43/116 (37%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 53 ETGPRRRPFLPGVAHPRTHRQTGPARVTRSA-KAGYGLRVGSGPYGRPRGNAGQEKVWEK 111
++GPRRRP PG R+ R G R SA AG G GSG RG W
Sbjct: 220 DSGPRRRPG-PGPPALRSGRSRGSGRPPDSAGAAGTG---GSGWAAALRG-------WPA 268
Query: 112 PASEASASGRPPELAPARSGAGQG----RRPNGGDRQGLGAGRDKHTTDGAGPGEG 163
P+S A++S P E P R G G R G D L G + G G GEG
Sbjct: 269 PSSFAASSALPEECLPPRRGCGWAELLEREAGGSDTGHLPLGNE----GGRGEGEG 320
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 45.4 bits (106), Expect = 3e-05
Identities = 43/116 (37%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 53 ETGPRRRPFLPGVAHPRTHRQTGPARVTRSA-KAGYGLRVGSGPYGRPRGNAGQEKVWEK 111
++GPRRRP PG R+ R G R SA AG G GSG RG W
Sbjct: 220 DSGPRRRPG-PGPPALRSGRSRGSGRPPDSAGAAGTG---GSGWAAALRG-------WPA 268
Query: 112 PASEASASGRPPELAPARSGAGQG----RRPNGGDRQGLGAGRDKHTTDGAGPGEG 163
P+S A++S P E P R G G R G D L G + G G GEG
Sbjct: 269 PSSFAASSALPEECLPPRRGCGWAELLEREAGGSDTGHLPLGNE----GGRGEGEG 320
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 45.4 bits (106), Expect = 3e-05
Identities = 43/116 (37%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 53 ETGPRRRPFLPGVAHPRTHRQTGPARVTRSA-KAGYGLRVGSGPYGRPRGNAGQEKVWEK 111
++GPRRRP PG R+ R G R SA AG G GSG RG W
Sbjct: 220 DSGPRRRPG-PGPPALRSGRSRGSGRPPDSAGAAGTG---GSGWAAALRG-------WPA 268
Query: 112 PASEASASGRPPELAPARSGAGQG----RRPNGGDRQGLGAGRDKHTTDGAGPGEG 163
P+S A++S P E P R G G R G D L G + G G GEG
Sbjct: 269 PSSFAASSALPEECLPPRRGCGWAELLEREAGGSDTGHLPLGNE----GGRGEGEG 320
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 43.9 bits (102), Expect = 8e-05
Identities = 50/167 (29%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 33 WGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRS-------AKA 85
WGR AAA A G +++ P R P A HR+ P R+ R A
Sbjct: 177 WGRAAAAA-----AARGSNSDSPPGR----PAPAASPEHRRPSPRRLPRPLLARFARAAG 227
Query: 86 GYGLRVGSGPY--GRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDR 143
G+G GS GR R + + S A + E A R+GA PN
Sbjct: 228 GHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAVTEEEAARLRAGALMAL-PNSPQS 286
Query: 144 QGLGAGRDKHTTDGAGPGEGTGPKKLLP----GPRPALSYLRRREGA 186
G G R + +GA P P L P GP LRRR A
Sbjct: 287 SGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGGPGSGRLGLRRRSTA 333
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 43.9 bits (102), Expect = 8e-05
Identities = 50/167 (29%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 33 WGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRS-------AKA 85
WGR AAA A G +++ P R P A HR+ P R+ R A
Sbjct: 177 WGRAAAAA-----AARGSNSDSPPGR----PAPAASPEHRRPSPRRLPRPLLARFARAAG 227
Query: 86 GYGLRVGSGPY--GRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDR 143
G+G GS GR R + + S A + E A R+GA PN
Sbjct: 228 GHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAVTEEEAARLRAGALMAL-PNSPQS 286
Query: 144 QGLGAGRDKHTTDGAGPGEGTGPKKLLP----GPRPALSYLRRREGA 186
G G R + +GA P P L P GP LRRR A
Sbjct: 287 SGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGGPGSGRLGLRRRSTA 333
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 43.9 bits (102), Expect = 8e-05
Identities = 50/167 (29%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 33 WGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRS-------AKA 85
WGR AAA A G +++ P R P A HR+ P R+ R A
Sbjct: 177 WGRAAAAA-----AARGSNSDSPPGR----PAPAASPEHRRPSPRRLPRPLLARFARAAG 227
Query: 86 GYGLRVGSGPY--GRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDR 143
G+G GS GR R + + S A + E A R+GA PN
Sbjct: 228 GHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAVTEEEAARLRAGALMAL-PNSPQS 286
Query: 144 QGLGAGRDKHTTDGAGPGEGTGPKKLLP----GPRPALSYLRRREGA 186
G G R + +GA P P L P GP LRRR A
Sbjct: 287 SGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGGPGSGRLGLRRRSTA 333
>gi|169202296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 43.5 bits (101), Expect = 1e-04
Identities = 48/165 (29%), Positives = 61/165 (36%), Gaps = 22/165 (13%)
Query: 22 VMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTR 81
V++ P L W V + P A A P G+ PR P
Sbjct: 11 VLDTAEPVTLCWAAVIRSVRLWPDISA---APPPPHPLSSRRGLGPPRAGGSPPPTAPPT 67
Query: 82 SAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRP---PELAP---ARSGAGQG 135
+ R G+ +G R + +E PA SG P P+ +P +GAGQG
Sbjct: 68 PTGSFPACRPGAR-FGAARCHQSRENRLVSPAESDKMSGTPLPPPQFSPPLPGSAGAGQG 126
Query: 136 RR-----PNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRP 175
+R NGG R LGA R A PG T LLP P P
Sbjct: 127 KRNRQLQENGGARLLLGAFR-------AAPGHVTRTPPLLPSPAP 164
>gi|169202970 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 43.1 bits (100), Expect = 1e-04
Identities = 48/165 (29%), Positives = 61/165 (36%), Gaps = 22/165 (13%)
Query: 22 VMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTR 81
V++ P L W V + P A A P G+ PR P
Sbjct: 11 VLDTAEPVTLCWAAVIRSVRLWPDISA---APPPPHPLSSRRGLGPPRAGGSPPPTAPPT 67
Query: 82 SAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRP---PELAPA---RSGAGQG 135
+ R G+ +G R + +E PA SG P P+ +P +GAGQG
Sbjct: 68 PTGSFPACRPGAR-FGAARCHQSRENRLVSPAESDKMSGTPLPPPQFSPPLPWSAGAGQG 126
Query: 136 RR-----PNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRP 175
+R NGG R LGA R A PG T LLP P P
Sbjct: 127 KRNRQLQENGGARLLLGAFR-------AAPGHVTRTPPLLPSPAP 164
>gi|169203510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 43.1 bits (100), Expect = 1e-04
Identities = 48/165 (29%), Positives = 61/165 (36%), Gaps = 22/165 (13%)
Query: 22 VMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTR 81
V++ P L W V + P A A P G+ PR P
Sbjct: 11 VLDTAEPVTLCWAAVIRSVRLWPDISA---APPPPHPLSSRRGLGPPRAGGSPPPTAPPT 67
Query: 82 SAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRP---PELAPA---RSGAGQG 135
+ R G+ +G R + +E PA SG P P+ +P +GAGQG
Sbjct: 68 PTGSFPACRPGAR-FGAARCHQSRENRLVSPAESDKMSGTPLPPPQFSPPLPWSAGAGQG 126
Query: 136 RR-----PNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRP 175
+R NGG R LGA R A PG T LLP P P
Sbjct: 127 KRNRQLQENGGARLLLGAFR-------AAPGHVTRTPPLLPSPAP 164
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/157 (31%), Positives = 56/157 (35%), Gaps = 10/157 (6%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPR-THRQTGPARVTRSA 83
GP PP G AA E+ P G GP LPG A T GP
Sbjct: 833 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP-GK 891
Query: 84 KAGYGLRVGSGPYGRPRGNAGQE--KVWEKPASEASASGRPPELAPARSGAGQGRRPNGG 141
GLR G G P G AG K E P+ +G P E A SG G G
Sbjct: 892 DGPAGLRGFPGERGLP-GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG 950
Query: 142 DRQGLGAGRDKHTTDGAGPGEGTGPKKL-----LPGP 173
+ GA +K GP TG + LPGP
Sbjct: 951 PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGP 987
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/164 (28%), Positives = 55/164 (33%), Gaps = 28/164 (17%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPR-THRQTGPARVTRSA 83
GP PP G+ GFQ +TGP P PGV P+ +TGP
Sbjct: 803 GPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP---PGPPGVVGPQGAAGETGP------- 852
Query: 84 KAGYGLRVGSGPYGRP-----RGNAGQEKVWEKPA--------SEASASGRPPELAPARS 130
G R GP G P G AG+E P A G P E +
Sbjct: 853 ---MGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGT 909
Query: 131 GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPR 174
G G + N G G AG G GP PGP+
Sbjct: 910 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPG-RPGPQ 952
Score = 36.2 bits (82), Expect = 0.017
Identities = 34/132 (25%), Positives = 44/132 (33%), Gaps = 8/132 (6%)
Query: 14 EVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQ 73
EV P +GP P GR + P G + + G P PG P+
Sbjct: 672 EVGVPGSRGEDGPEGPK---GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG 728
Query: 74 TGPARVTRSAKAGYGLRVGSGPYGR-----PRGNAGQEKVWEKPASEASASGRPPELAPA 128
K GL SGP G PRG G K ++ ++ G P P
Sbjct: 729 FPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPG 788
Query: 129 RSGAGQGRRPNG 140
G + PNG
Sbjct: 789 ERGLPGPQGPNG 800
Score = 29.3 bits (64), Expect = 2.1
Identities = 42/156 (26%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 23 MEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGV-AHPRTHRQTGPARVTR 81
++GP G E P G + GP+ P G P + GP R
Sbjct: 1143 VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGP----R 1198
Query: 82 SAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPN-- 139
G R G G+P G+ G P E G + PA S +GR+
Sbjct: 1199 GQDGAKGDRGEDGEPGQP-GSPG-------PTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1250
Query: 140 -GGDRQGLGAGRDKHTTDGAGPGEGTGPKKL--LPG 172
GD +GA AGP GP L LPG
Sbjct: 1251 AKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1286
Score = 28.9 bits (63), Expect = 2.8
Identities = 40/156 (25%), Positives = 50/156 (32%), Gaps = 18/156 (11%)
Query: 24 EGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGV----AHPRTHRQTGPARV 79
+G PP G P G E GP+ +P LPG+ P + GP
Sbjct: 556 QGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP-- 613
Query: 80 TRSAKAGYGLRVGSGP--YGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRR 137
K G GP Y PRG G + + G E +G
Sbjct: 614 --GTKGNQGPSGPQGPLGYPGPRGVKGVDGI-------RGLKGHKGEKGEDGFPGFKGDI 664
Query: 138 PNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGP 173
GDR +G + GP TGP PGP
Sbjct: 665 GVKGDRGEVGVPGSRGEDGPEGPKGRTGPTG-DPGP 699
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/157 (31%), Positives = 56/157 (35%), Gaps = 10/157 (6%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPR-THRQTGPARVTRSA 83
GP PP G AA E+ P G GP LPG A T GP
Sbjct: 812 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP-GK 870
Query: 84 KAGYGLRVGSGPYGRPRGNAGQE--KVWEKPASEASASGRPPELAPARSGAGQGRRPNGG 141
GLR G G P G AG K E P+ +G P E A SG G G
Sbjct: 871 DGPAGLRGFPGERGLP-GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG 929
Query: 142 DRQGLGAGRDKHTTDGAGPGEGTGPKKL-----LPGP 173
+ GA +K GP TG + LPGP
Sbjct: 930 PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGP 966
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/164 (28%), Positives = 55/164 (33%), Gaps = 28/164 (17%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPR-THRQTGPARVTRSA 83
GP PP G+ GFQ +TGP P PGV P+ +TGP
Sbjct: 782 GPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP---PGPPGVVGPQGAAGETGP------- 831
Query: 84 KAGYGLRVGSGPYGRP-----RGNAGQEKVWEKPA--------SEASASGRPPELAPARS 130
G R GP G P G AG+E P A G P E +
Sbjct: 832 ---MGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGT 888
Query: 131 GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPR 174
G G + N G G AG G GP PGP+
Sbjct: 889 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPG-RPGPQ 931
Score = 36.2 bits (82), Expect = 0.017
Identities = 34/132 (25%), Positives = 44/132 (33%), Gaps = 8/132 (6%)
Query: 14 EVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQ 73
EV P +GP P GR + P G + + G P PG P+
Sbjct: 651 EVGVPGSRGEDGPEGPK---GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG 707
Query: 74 TGPARVTRSAKAGYGLRVGSGPYGR-----PRGNAGQEKVWEKPASEASASGRPPELAPA 128
K GL SGP G PRG G K ++ ++ G P P
Sbjct: 708 FPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPG 767
Query: 129 RSGAGQGRRPNG 140
G + PNG
Sbjct: 768 ERGLPGPQGPNG 779
Score = 29.3 bits (64), Expect = 2.1
Identities = 42/156 (26%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 23 MEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGV-AHPRTHRQTGPARVTR 81
++GP G E P G + GP+ P G P + GP R
Sbjct: 1122 VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGP----R 1177
Query: 82 SAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPN-- 139
G R G G+P G+ G P E G + PA S +GR+
Sbjct: 1178 GQDGAKGDRGEDGEPGQP-GSPG-------PTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1229
Query: 140 -GGDRQGLGAGRDKHTTDGAGPGEGTGPKKL--LPG 172
GD +GA AGP GP L LPG
Sbjct: 1230 AKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1265
Score = 28.9 bits (63), Expect = 2.8
Identities = 40/156 (25%), Positives = 50/156 (32%), Gaps = 18/156 (11%)
Query: 24 EGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGV----AHPRTHRQTGPARV 79
+G PP G P G E GP+ +P LPG+ P + GP
Sbjct: 535 QGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP-- 592
Query: 80 TRSAKAGYGLRVGSGP--YGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRR 137
K G GP Y PRG G + + G E +G
Sbjct: 593 --GTKGNQGPSGPQGPLGYPGPRGVKGVDGI-------RGLKGHKGEKGEDGFPGFKGDI 643
Query: 138 PNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGP 173
GDR +G + GP TGP PGP
Sbjct: 644 GVKGDRGEVGVPGSRGEDGPEGPKGRTGPTG-DPGP 678
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/157 (31%), Positives = 56/157 (35%), Gaps = 10/157 (6%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPR-THRQTGPARVTRSA 83
GP PP G AA E+ P G GP LPG A T GP
Sbjct: 919 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP-GK 977
Query: 84 KAGYGLRVGSGPYGRPRGNAGQE--KVWEKPASEASASGRPPELAPARSGAGQGRRPNGG 141
GLR G G P G AG K E P+ +G P E A SG G G
Sbjct: 978 DGPAGLRGFPGERGLP-GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG 1036
Query: 142 DRQGLGAGRDKHTTDGAGPGEGTGPKKL-----LPGP 173
+ GA +K GP TG + LPGP
Sbjct: 1037 PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGP 1073
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/164 (28%), Positives = 55/164 (33%), Gaps = 28/164 (17%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPR-THRQTGPARVTRSA 83
GP PP G+ GFQ +TGP P PGV P+ +TGP
Sbjct: 889 GPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP---PGPPGVVGPQGAAGETGP------- 938
Query: 84 KAGYGLRVGSGPYGRP-----RGNAGQEKVWEKPA--------SEASASGRPPELAPARS 130
G R GP G P G AG+E P A G P E +
Sbjct: 939 ---MGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGT 995
Query: 131 GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPR 174
G G + N G G AG G GP PGP+
Sbjct: 996 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPG-RPGPQ 1038
Score = 36.2 bits (82), Expect = 0.017
Identities = 34/132 (25%), Positives = 44/132 (33%), Gaps = 8/132 (6%)
Query: 14 EVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQ 73
EV P +GP P GR + P G + + G P PG P+
Sbjct: 758 EVGVPGSRGEDGPEGPK---GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG 814
Query: 74 TGPARVTRSAKAGYGLRVGSGPYGR-----PRGNAGQEKVWEKPASEASASGRPPELAPA 128
K GL SGP G PRG G K ++ ++ G P P
Sbjct: 815 FPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPG 874
Query: 129 RSGAGQGRRPNG 140
G + PNG
Sbjct: 875 ERGLPGPQGPNG 886
Score = 29.3 bits (64), Expect = 2.1
Identities = 42/156 (26%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 23 MEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGV-AHPRTHRQTGPARVTR 81
++GP G E P G + GP+ P G P + GP R
Sbjct: 1229 VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGP----R 1284
Query: 82 SAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPN-- 139
G R G G+P G+ G P E G + PA S +GR+
Sbjct: 1285 GQDGAKGDRGEDGEPGQP-GSPG-------PTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1336
Query: 140 -GGDRQGLGAGRDKHTTDGAGPGEGTGPKKL--LPG 172
GD +GA AGP GP L LPG
Sbjct: 1337 AKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1372
Score = 28.9 bits (63), Expect = 2.8
Identities = 40/156 (25%), Positives = 50/156 (32%), Gaps = 18/156 (11%)
Query: 24 EGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGV----AHPRTHRQTGPARV 79
+G PP G P G E GP+ +P LPG+ P + GP
Sbjct: 642 QGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP-- 699
Query: 80 TRSAKAGYGLRVGSGP--YGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRR 137
K G GP Y PRG G + + G E +G
Sbjct: 700 --GTKGNQGPSGPQGPLGYPGPRGVKGVDGI-------RGLKGHKGEKGEDGFPGFKGDI 750
Query: 138 PNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGP 173
GDR +G + GP TGP PGP
Sbjct: 751 GVKGDRGEVGVPGSRGEDGPEGPKGRTGPTG-DPGP 785
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.7 bits (99), Expect = 2e-04
Identities = 42/158 (26%), Positives = 48/158 (30%), Gaps = 17/158 (10%)
Query: 18 PRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPA 77
P+ H + P PPP + A P G G P P + GP
Sbjct: 91 PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPT 150
Query: 78 RVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRR 137
A V S P G P V P + A G PP A
Sbjct: 151 PTPPPA-------VTSAPPGAPPPTPPSSGV---PTTPPQAGGPPPPPAAVPG------- 193
Query: 138 PNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRP 175
P G +QG G G K GP G GP PG P
Sbjct: 194 PGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHP 231
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 41.6 bits (96), Expect = 4e-04
Identities = 59/207 (28%), Positives = 75/207 (36%), Gaps = 37/207 (17%)
Query: 2 GGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGR------------VWAAAESAPTAGAG 49
GGGAG AG+ V+ + + +GP PP G+ + E P G
Sbjct: 29 GGGAGGA-AGYAPVKYIQP-MQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPG 86
Query: 50 FQAETGPRRRPFLPGVAHPRTHRQTGPA---RVTRSAKAG-YGLRVGSGPYGRP--RGNA 103
+ GP P PG+ P H Q GPA +R KAG GL GP G+P RG
Sbjct: 87 PRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEP 146
Query: 104 G--QEKVWEKPASEASASGRPPELAPARSGA-------GQGRRPNGGDRQGLGAGRDKHT 154
G ++ P G P + GA G P G R
Sbjct: 147 GIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKG 206
Query: 155 TDGAG-------PGEGTGP-KKLLPGP 173
+G G PG+G P LPGP
Sbjct: 207 DNGVGQPGLPGAPGQGGAPGPPGLPGP 233
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 41.2 bits (95), Expect = 5e-04
Identities = 53/169 (31%), Positives = 61/169 (36%), Gaps = 17/169 (10%)
Query: 24 EGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSA 83
+GP PP G S P G E G LPG A PR R
Sbjct: 546 QGPPGPP---GFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGP 602
Query: 84 KAGYGLRVGSGPYGRPRGNAGQEKVWEK--PASEASASGRPPELAPARSGAGQGRRPNGG 141
G R SGP G P GN G+ V A + SG P E A G+G + G
Sbjct: 603 TGPIGSRGPSGPPG-PDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPG 661
Query: 142 DRQGLG-AGRDKHTTDGAGPGEGTGPKKLLPGPRPALSYLRRREGAAAG 189
R +G GR DGA G + P PA + R E AAG
Sbjct: 662 LRGEIGNPGR-----DGARGAPGA-----VGAPGPAGATGDRGEAGAAG 700
Score = 31.2 bits (69), Expect = 0.56
Identities = 43/157 (27%), Positives = 52/157 (33%), Gaps = 19/157 (12%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
G A PP G E AG GPR LPG++ P A AK
Sbjct: 250 GSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAK 309
Query: 85 AGYGLRVGSGPYG--RPRGNAGQEKVWEKPASEASASGR-----PPELAPARSGAGQGRR 137
GL +G G PRG G P A A+G P A ++ +G
Sbjct: 310 GAAGLPGVAGAPGLPGPRGIPG-------PVGAAGATGARGLVGEPGPAGSKGESGNKGE 362
Query: 138 PNGGDRQG-LGAGRDKHTTDGAGPGEGTGPKKLLPGP 173
P QG G ++ G GP PGP
Sbjct: 363 PGSAGPQGPPGPSGEEGKRGPNGEAGSAGP----PGP 395
Score = 30.0 bits (66), Expect = 1.2
Identities = 43/164 (26%), Positives = 55/164 (33%), Gaps = 26/164 (15%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
GPA P G + + P GF G P G++ P P + K
Sbjct: 763 GPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGP-------PGPPGPAGK 815
Query: 85 AGY-GLRVGSGPYGR--------PRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQG 135
G G R GP GR P G AG+ + P+ EA +G P P G
Sbjct: 816 EGLRGPRGDQGPVGRTGEVGAVGPPGFAGE----KGPSGEAGTAGPPGTPGPQGLLGAPG 871
Query: 136 --RRPNGGDRQGL----GAGRDKHTTDGAGPGEGTGPKKLLPGP 173
P +GL GA + AGP GP + P
Sbjct: 872 ILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSP 915
Score = 29.6 bits (65), Expect = 1.6
Identities = 54/195 (27%), Positives = 67/195 (34%), Gaps = 24/195 (12%)
Query: 1 MGGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGP---R 57
+GG Y G P + GP PP A G P G +TGP R
Sbjct: 73 LGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGAR 132
Query: 58 RRPFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRP-----RGNAGQEKVWEKP 112
PG A H R G R G G P RG+ G + + +P
Sbjct: 133 GPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQP 192
Query: 113 ASEASASGRPPELAPARSGA-GQ-GRRPNGGDRQGLGA--GRDKHTTDG-------AGPG 161
+ G P AP +G GQ G R G+R +GA +DG AGP
Sbjct: 193 GA-PGVKGEPG--APGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPI 249
Query: 162 EGTGPKKL--LPGPR 174
GP PGP+
Sbjct: 250 GSAGPPGFPGAPGPK 264
Score = 29.6 bits (65), Expect = 1.6
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
GP+ P G V S P G + E G + LPG+ + H
Sbjct: 982 GPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGL---KGHNGLQGLPGIAGHH 1038
Query: 85 AGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGG 141
G GP G PRG AG PA + +G P + PA QG + G
Sbjct: 1039 GDQGAPGSVGPAG-PRGPAGP----SGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAG 1090
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 40.8 bits (94), Expect = 7e-04
Identities = 49/174 (28%), Positives = 61/174 (35%), Gaps = 17/174 (9%)
Query: 1 MGGGAGPVYAGFKEV-RAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRR 59
+G P AG +V APR A PP AAA + T G G A P +
Sbjct: 149 LGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAA---PTKV 205
Query: 60 PFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASAS 119
PGVA P + A A G G G PR K A+ + +
Sbjct: 206 AEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHT 265
Query: 120 GRPPE------LAPARSGAGQGRRPNGGDRQGLGAGRDKHTTDGAG----PGEG 163
G P+ P G G R NGG +G + K D G PG+G
Sbjct: 266 GAIPKATSATGAVPKGGGKGVTRSRNGGKGKG---KKSKVEVDELGMGFRPGDG 316
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 40.8 bits (94), Expect = 7e-04
Identities = 49/174 (28%), Positives = 61/174 (35%), Gaps = 17/174 (9%)
Query: 1 MGGGAGPVYAGFKEV-RAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRR 59
+G P AG +V APR A PP AAA + T G G A P +
Sbjct: 149 LGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAA---PTKV 205
Query: 60 PFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASAS 119
PGVA P + A A G G G PR K A+ + +
Sbjct: 206 AEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHT 265
Query: 120 GRPPE------LAPARSGAGQGRRPNGGDRQGLGAGRDKHTTDGAG----PGEG 163
G P+ P G G R NGG +G + K D G PG+G
Sbjct: 266 GAIPKATSATGAVPKGGGKGVTRSRNGGKGKG---KKSKVEVDELGMGFRPGDG 316
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.3 bits (90), Expect = 0.002
Identities = 53/183 (28%), Positives = 68/183 (37%), Gaps = 38/183 (20%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVA-------HPRTHRQTGP- 76
GPA PP G V A E+ P G + G R P PG A +P Q G
Sbjct: 338 GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 397
Query: 77 ----ARVTRSAKAGYGLRVGSGPYG-----RPRGNAGQEKVWEKPAS--EASASGRPPEL 125
A A G R SGP G P+GN+G+ P S + A G P +
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGA---PGSKGDTGAKGEPGPV 454
Query: 126 ---APARSGAGQGRR-------PNG-----GDRQGLGAGRDKHTTDGAGPGEGTGPKKLL 170
P +G+R P G G+R G G+ R DG +G ++
Sbjct: 455 GVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS-RGFPGADGVAGPKGPAGERGS 513
Query: 171 PGP 173
PGP
Sbjct: 514 PGP 516
Score = 38.9 bits (89), Expect = 0.003
Identities = 47/160 (29%), Positives = 61/160 (38%), Gaps = 21/160 (13%)
Query: 23 MEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRS 82
+ G P A G A T AG TGP P PG + + GP + R
Sbjct: 306 LPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAK--GEAGP-QGPRG 362
Query: 83 AKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRP--------PELAPARSGAGQ 134
++ G+R GP G P G AG PA A G+P P +A A G
Sbjct: 363 SEGPQGVRGEPGPPG-PAGAAG-------PAGNPGADGQPGAKGANGAPGIAGAPGFPG- 413
Query: 135 GRRPNGGDRQGLGAGRDKHTTDGAGPG-EGTGPKKLLPGP 173
R P+G G G ++ + PG +G K PGP
Sbjct: 414 ARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGP 453
Score = 37.7 bits (86), Expect = 0.006
Identities = 51/174 (29%), Positives = 59/174 (33%), Gaps = 26/174 (14%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
GP PP A G+ P AG + G R P PG P A+
Sbjct: 566 GPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 625
Query: 85 AGYGLRVGSGPYGRP-----RGNAGQEKVWEKPASEASASGRPPEL-APARSGAG----- 133
G R GP G P G AG KP + G P +L AP SGA
Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ----GVPGDLGAPGPSGARGERGF 681
Query: 134 ------QGRRPNGGDRQGLGA-GRDKHTTDGAGPG----EGTGPKKLLPGPRPA 176
QG G R GA G D D PG +G + +PG R A
Sbjct: 682 PGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA 735
Score = 37.4 bits (85), Expect = 0.008
Identities = 45/158 (28%), Positives = 56/158 (35%), Gaps = 21/158 (13%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPR--RRPFLP-------GVAHPRTHRQTG 75
GPA PP A G A P +G + ETGP P P G PR +
Sbjct: 1040 GPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGET 1099
Query: 76 PARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQG 135
+ R K G GP G P G+ G++ + ASG P S G
Sbjct: 1100 GEQGDRGIKGHRGFSGLQGPPG-PPGSPGEQ-------GPSGASGPAGPRGPPGSAGAPG 1151
Query: 136 RRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGP 173
+ G +G + T AGP GP PGP
Sbjct: 1152 KDGLNGLPGPIGPPGPRGRTGDAGPVGPPGP----PGP 1185
Score = 35.8 bits (81), Expect = 0.023
Identities = 58/194 (29%), Positives = 67/194 (34%), Gaps = 27/194 (13%)
Query: 3 GGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFL 62
G AGP V AP G A PP A G AA P +G GP
Sbjct: 845 GPAGPP-GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGK 903
Query: 63 PGVAHPRTHRQTGPA----RVTRSAKAGYGLRVGS----GPYGR-----PRGNAGQEKVW 109
G PR +TGPA V G GS GP G P+G AGQ V
Sbjct: 904 EGGKGPR--GETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 961
Query: 110 EKPASEA--------SASGRPPELAPARSGAGQGRRPNGG-DRQGLGAGRDKHTTDGAGP 160
P SG P + P SGA R P G GL + +GA
Sbjct: 962 GLPGQRGERGFPGLPGPSGEPGKQGP--SGASGERGPPGPMGPPGLAGPPGESGREGAPG 1019
Query: 161 GEGTGPKKLLPGPR 174
EG+ + PG +
Sbjct: 1020 AEGSPGRDGSPGAK 1033
Score = 30.4 bits (67), Expect = 0.95
Identities = 42/151 (27%), Positives = 49/151 (32%), Gaps = 14/151 (9%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVA----HPRTHRQTGPARVT 80
GP P A G + S P G + G R P PG A P Q G
Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG----A 825
Query: 81 RSAKAGYGLRVGSGPYGRPRGNAGQE----KVWEKPASEASASGRPPELAPARSGAGQGR 136
+ G + +GP G P G AG V A A S PP AG+
Sbjct: 826 KGEPGDAGAKGDAGPPG-PAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 137 RPN-GGDRQGLGAGRDKHTTDGAGPGEGTGP 166
P G+ G G GP TGP
Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGPRGETGP 915
Score = 30.0 bits (66), Expect = 1.2
Identities = 39/143 (27%), Positives = 53/143 (37%), Gaps = 22/143 (15%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAH-PRTHRQTGPARVTRSA 83
GP PP G+ E+ G + GP+ LPG A P G + +
Sbjct: 218 GPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD--- 274
Query: 84 KAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDR 143
G + +GP G P+G G +G P ++ P R G+ RP G
Sbjct: 275 ----GAKGDAGPAG-PKGEPG----------SPGENGAPGQMGP-RGLPGERGRP--GAP 316
Query: 144 QGLGAGRDKHTTDGAGPGEGTGP 166
GA + T AGP TGP
Sbjct: 317 GPAGARGNDGATGAAGPPGPTGP 339
Score = 29.3 bits (64), Expect = 2.1
Identities = 52/192 (27%), Positives = 58/192 (30%), Gaps = 35/192 (18%)
Query: 3 GGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFL 62
G GP AG + + PR GPA P G V P G GP P
Sbjct: 896 GPPGP--AGKEGGKGPRGET--GPAGRP---GEVGPPGPPGPAGEKGSPGADGPAGAPGT 948
Query: 63 PG----------VAHPRTHRQTG----PARVTRSAKAG----YGLRVGSGPYGRP--RGN 102
PG V P + G P K G G R GP G P G
Sbjct: 949 PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGP 1008
Query: 103 AGQEKVWEKPASEAS--------ASGRPPELAPARSGAGQGRRPNGGDRQGLGAGRDKHT 154
G+ P +E S A G E PA G G G D+
Sbjct: 1009 PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 1068
Query: 155 TDGAGPGEGTGP 166
T AGP GP
Sbjct: 1069 TGPAGPAGPVGP 1080
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.3 bits (90), Expect = 0.002
Identities = 54/174 (31%), Positives = 60/174 (34%), Gaps = 37/174 (21%)
Query: 25 GPAPPPLAWGRVWAAAESAPTA----GAGFQAETGPR--RRPFLP-GVAHPRTHRQTGPA 77
GPA P A G AA E P G G GP RRP +P G A P + P
Sbjct: 74 GPAAP--AEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPE 131
Query: 78 RVTRS-AKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGR 136
S A V +GP P G A KPA A+ + R A G G G
Sbjct: 132 GSAGSCAPVPAAAAVAAGPEPAPAGPA-------KPAGPAALAAR------AGPGPGPGP 178
Query: 137 RPNGGDRQGLGAG--------------RDKHTTDGAGPGEGTGPKKLLPGPRPA 176
P G G AG H A GP LLP P+PA
Sbjct: 179 GPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPA 232
Score = 33.1 bits (74), Expect = 0.15
Identities = 45/148 (30%), Positives = 49/148 (33%), Gaps = 17/148 (11%)
Query: 32 AWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAKAGYGLRV 91
A G + A AGAG P P P + PA R G R
Sbjct: 57 ALGNHVVSGSPAGAAGAG----------PAAPAEGAPGAAPEPPPAGRARPGGGG-PQRP 105
Query: 92 GSGPYGRPRGNAGQEKVWEK--PASEASASGRPPELAPARSGAGQGRRPNGGDRQGLGAG 149
G RP AG K P E SA P A A AG P G + A
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
Query: 150 RDKHTTDGAGPGEGTGPKKLLPGP-RPA 176
G GPG G GP PGP +PA
Sbjct: 166 LAARAGPGPGPGPGPGPG---PGPGKPA 190
Score = 27.3 bits (59), Expect = 8.0
Identities = 32/119 (26%), Positives = 42/119 (35%), Gaps = 19/119 (15%)
Query: 26 PAPPPLAWGRVWAAAESAPTAGA-----GFQAETGPRRRPFLPGVAHPRTHRQTGPARVT 80
PAP P A G + + P A A G +AE+ R P A +T +GPA
Sbjct: 313 PAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA--QTLAASGPASTA 370
Query: 81 RSAKAGYGLR------------VGSGPYGRPRGNAGQEKVWEKPASEASASGRPPELAP 127
S G ++ P G P+G AG A+ SG L P
Sbjct: 371 ASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTP 429
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 38.9 bits (89), Expect = 0.003
Identities = 56/192 (29%), Positives = 67/192 (34%), Gaps = 27/192 (14%)
Query: 1 MGGGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVW-------AAAESAPTAGAGFQAE 53
+GG AG + A AP + P P L G W A A +P A G
Sbjct: 6 VGGDAGALSA------APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRV 59
Query: 54 TGPRRRPFLPGVAHP-RTHRQT----GPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKV 108
+ PR PF P P R HR GP R + G +GP R R
Sbjct: 60 SSPR--PFPPRPERPSRRHRAGCGAHGPGSRGRERRRG-SRDPPAGPVARARARGRSAPG 116
Query: 109 WEKPASEASASGRPPELAPAR---SGAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTG 165
+PAS A+ PE AP + R+ N L R AGP G
Sbjct: 117 SAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGP---AG 173
Query: 166 PKKLLPGPRPAL 177
P L P PAL
Sbjct: 174 PSILRVAPHPAL 185
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 38.5 bits (88), Expect = 0.003
Identities = 52/177 (29%), Positives = 59/177 (33%), Gaps = 27/177 (15%)
Query: 3 GGAGPVYAGFKEVRAPRRHVMEGPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFL 62
G AGP G K PR G PP + G + E+ PT GF GP +P +
Sbjct: 807 GPAGPT--GEKGEPGPR-----GLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGV 859
Query: 63 PGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYG--------RPRGNAGQEKVWEKPAS 114
G P Q G A + GL GP+G RG G P S
Sbjct: 860 KG--EPGEPGQKGDA----GSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGS 913
Query: 115 EASASGRPPELAPARSGAGQGRRPNGGDRQGLGAGRDKHTTDG----AGPGEGTGPK 167
PP A A AG P GL H G AGP G G K
Sbjct: 914 AGRVG--PPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDK 968
Score = 31.2 bits (69), Expect = 0.56
Identities = 51/173 (29%), Positives = 58/173 (33%), Gaps = 28/173 (16%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPG----VAHPRTHRQTGPARVT 80
GP PP G E P GFQ GP P G P GP
Sbjct: 654 GPVGPP---GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLG-P 709
Query: 81 RSAKAGYGLRVGSGPYGRP--RGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRP 138
R + G R G G P +G AG + P SG P + P G R
Sbjct: 710 RGERGNPGERGEPGITGLPGEKGMAGGHGP-DGPKGSPGPSGTPGDTGPPGLQGMPGERG 768
Query: 139 NG------GDRQGLGAGRDKHT--TDGA-------GPGEGTGP--KKLLPGPR 174
GDR G+G + T DGA GP GP +K PGPR
Sbjct: 769 IAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPR 821
Score = 27.3 bits (59), Expect = 8.0
Identities = 38/149 (25%), Positives = 49/149 (32%), Gaps = 11/149 (7%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
GP PP G + GF G R P PG+ + HR +
Sbjct: 255 GPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEV 314
Query: 85 AGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASASGR-PPELAPARSGA-GQGRRPNGGD 142
G + +GP G P G G P GR P+ AP + GA G +P
Sbjct: 315 GAPGSKGEAGPTG-PMGAMGP----LGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMG 369
Query: 143 RQGLGAGRDKHTTDG----AGPGEGTGPK 167
G+ G AGP GP+
Sbjct: 370 PLGIPGSSGFPGNPGMKGEAGPTGARGPE 398
>gi|239754399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 38.5 bits (88), Expect = 0.003
Identities = 54/192 (28%), Positives = 74/192 (38%), Gaps = 26/192 (13%)
Query: 4 GAGPVYAGFKE--VRAPRRHVMEGPAPPPLAWG-RVWAAAESA-PTAGAGFQAETGPRRR 59
G GP+ KE RAP++ APPP ++ RVW ++A A G A++ R
Sbjct: 175 GLGPIPGEAKERGARAPQKQA----APPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEER 230
Query: 60 PFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASAS 119
GV RT R PAR V P GR R +PA+ A+
Sbjct: 231 AGPRGV---RTVRGQPPARPFSF------FAVAKLPQGRKRRQR------RRPAAAAALH 275
Query: 120 GRPPELAPARS---GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPA 176
R L +S G G P +GL A + A P G + PG P
Sbjct: 276 ARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPR 335
Query: 177 LSYLRRREGAAA 188
+++R AA+
Sbjct: 336 AAFVRSLGPAAS 347
>gi|239748964 PREDICTED: hypothetical protein XP_002346869 [Homo
sapiens]
Length = 414
Score = 38.5 bits (88), Expect = 0.003
Identities = 54/192 (28%), Positives = 74/192 (38%), Gaps = 26/192 (13%)
Query: 4 GAGPVYAGFKE--VRAPRRHVMEGPAPPPLAWG-RVWAAAESA-PTAGAGFQAETGPRRR 59
G GP+ KE RAP++ APPP ++ RVW ++A A G A++ R
Sbjct: 175 GLGPIPGEAKERGARAPQKQA----APPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEER 230
Query: 60 PFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASAS 119
GV RT R PAR V P GR R +PA+ A+
Sbjct: 231 AGPRGV---RTVRGQPPARPFSF------FAVAKLPQGRKRRQR------RRPAAAAALH 275
Query: 120 GRPPELAPARS---GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPA 176
R L +S G G P +GL A + A P G + PG P
Sbjct: 276 ARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPR 335
Query: 177 LSYLRRREGAAA 188
+++R AA+
Sbjct: 336 AAFVRSLGPAAS 347
>gi|239742984 PREDICTED: hypothetical protein XP_002342711 [Homo
sapiens]
Length = 414
Score = 38.5 bits (88), Expect = 0.003
Identities = 54/192 (28%), Positives = 74/192 (38%), Gaps = 26/192 (13%)
Query: 4 GAGPVYAGFKE--VRAPRRHVMEGPAPPPLAWG-RVWAAAESA-PTAGAGFQAETGPRRR 59
G GP+ KE RAP++ APPP ++ RVW ++A A G A++ R
Sbjct: 175 GLGPIPGEAKERGARAPQKQA----APPPQSYPCRVWEKFQAALQRAAGGIAAKSTTEER 230
Query: 60 PFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASEASAS 119
GV RT R PAR V P GR R +PA+ A+
Sbjct: 231 AGPRGV---RTVRGQPPARPFSF------FAVAKLPQGRKRRQR------RRPAAAAALH 275
Query: 120 GRPPELAPARS---GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPA 176
R L +S G G P +GL A + A P G + PG P
Sbjct: 276 ARRRLLLLVKSYFARGGTGAEPGVTSPRGLRALLRNAGSGAAPPPPPAGETRASPGRAPR 335
Query: 177 LSYLRRREGAAA 188
+++R AA+
Sbjct: 336 AAFVRSLGPAAS 347
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 37.7 bits (86), Expect = 0.006
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 38 AAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYG 97
AA E A AGA + PRR+ P VA ++ +R + A A G G
Sbjct: 508 AAGEKATAAGAKSRGRKQPRRQK--PAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGGNK 565
Query: 98 RPRGNAGQE-KVWEKPASEASASG---RPPELAPARSGAGQGRRPNGGDRQGLGAGRDKH 153
+ RG G + + W + A+ A G + P A +G + R +GG + A R K
Sbjct: 566 QSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGKK----AWRQKA 621
Query: 154 TTDGA 158
GA
Sbjct: 622 AGTGA 626
Score = 36.2 bits (82), Expect = 0.017
Identities = 53/211 (25%), Positives = 75/211 (35%), Gaps = 55/211 (26%)
Query: 25 GPAPPPLAWGRVWAAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAK 84
G P WG+ AAA+ T G G + P + GV R+ G + R
Sbjct: 570 GGGNKPRQWGQTAAAAK---TRGGG---DKQPGWQKAAAGVTKSRSG--DGGKKAWRQKA 621
Query: 85 AGYGLRVGSGPYGR-----------------PRGNAGQEKVWEKPAS---EASASGRPPE 124
AG G + P+ R RG+ G++ W+KPA+ E+SA+ +
Sbjct: 622 AGTGAKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQ 681
Query: 125 LAPARSGAGQGRRPNGGD-------------RQG--------LGAGRDKHTTDGAGPGEG 163
A AR + R + GD R+G G G K G G
Sbjct: 682 EAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAKSRGSGGAKSRG 741
Query: 164 TGPKKLLPGPRPALSY------LRRREGAAA 188
+G K G + A S +RR G A
Sbjct: 742 SGGAKSRSGKKAAASKSHGGGGAKRRRGGGA 772
Score = 31.6 bits (70), Expect = 0.43
Identities = 41/155 (26%), Positives = 58/155 (37%), Gaps = 14/155 (9%)
Query: 38 AAAESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYG 97
A +ES+ A G +AE R++P Q + + G R+G G
Sbjct: 669 AGSESSAAAAVGQEAEA--RKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGG 726
Query: 98 ---RPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDRQGLGAGRDKHT 154
+ RG+ G + A S SG+ + + G G RR GG + G +K
Sbjct: 727 GGAKSRGSGGAKSRGSGGAK--SRSGKKAAASKSHGGGGAKRRRGGGAKSRSG---EKAV 781
Query: 155 TDGAGPGEGTGPKKLLPGPRPALSYLRRREGAAAG 189
T G G KK P S R + AAAG
Sbjct: 782 TAGGQKAAAAGGKK----PPRVKSRGGRGQKAAAG 812
Score = 29.6 bits (65), Expect = 1.6
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 30/172 (17%)
Query: 41 ESAPTAGAGFQAETGPRRRPFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSG--PYGR 98
+ A AGA ++ PRRR + RQ R AK+ +G G + R
Sbjct: 175 QKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQ-------REAKSRFGKTRGGRRKKHRR 227
Query: 99 PRGNAGQEKV----WEKPASEA-----SASGRPPELAPARSGAGQGRRPNGGDRQGLGAG 149
P+ AG K +KP + +A+G + +R G + R G + GA
Sbjct: 228 PKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAALAGAK 287
Query: 150 RDKHTTDGAGPGE----GTGPKKL--------LPGPRPALSYLRRREGAAAG 189
R T G P G GPK L G +P + + AAAG
Sbjct: 288 RRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAG 339
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 37.4 bits (85), Expect = 0.008
Identities = 45/157 (28%), Positives = 53/157 (33%), Gaps = 16/157 (10%)
Query: 26 PAPPPLAWGRVWAAAESAPTAG-AGFQAETGPRRRPFLPGVAHPRTHRQTG--------P 76
PA P A GR E G G A G + PR H G P
Sbjct: 170 PALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAP 229
Query: 77 ARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPA------SEASASGRPPELAPARS 130
R A AG G P Q+ + +P S SA+ RP A RS
Sbjct: 230 RRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRS 289
Query: 131 GAGQGRRPNGGDRQGLGAGRDKHTTDGAGPGEGTGPK 167
G R GG G G+ R +H G G GT P+
Sbjct: 290 GFSGRPRGRGGAAAGRGS-RGEHPACGVGLARGTAPQ 325
Score = 28.1 bits (61), Expect = 4.7
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 56 PRRRPFLPGVAHPRTHRQTGPARVTRSAKAGYGLRVGSGPYGRPRGNAGQEKVWEKPASE 115
P+RRP A P GPAR +A G + P+ RP G + P
Sbjct: 397 PKRRP---PCARPSG---AGPAREGPAAWPG---GAPTPPHARPTGRRQDPE----PGPR 443
Query: 116 ASASGRPPELAPARSGAGQGRRPNGGDRQGLGAGRDK 152
A G A S AG+G P GG R A R +
Sbjct: 444 APRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,204,766
Number of Sequences: 37866
Number of extensions: 753851
Number of successful extensions: 4184
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 548
Number of HSP's that attempted gapping in prelim test: 3290
Number of HSP's gapped (non-prelim): 1272
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.