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Search of human proteins with 239748304
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo
sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo ... 590 e-169
gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo ... 532 e-151
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 402 e-112
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 42 6e-04
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 42 6e-04
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 42 6e-04
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 42 8e-04
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 42 8e-04
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 42 8e-04
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 42 8e-04
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 42 8e-04
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 42 8e-04
gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo... 40 0.002
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 40 0.002
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 40 0.003
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 40 0.003
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 40 0.003
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 39 0.004
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 39 0.007
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 39 0.007
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 38 0.009
gi|239742580 PREDICTED: similar to Putative POM121-like protein ... 38 0.009
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 38 0.009
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 38 0.009
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 38 0.009
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.012
>gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo
sapiens]
Length = 285
Score = 590 bits (1520), Expect = e-169
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MPCSRPAPRQWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVD 60
MPCSRPAPRQWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVD
Sbjct: 1 MPCSRPAPRQWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVD 60
Query: 61 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 120
PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR
Sbjct: 61 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 120
Query: 121 GRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGAR 180
GRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGAR
Sbjct: 121 GRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGAR 180
Query: 181 RPAPGARRSRPRLLRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVI 240
RPAPGARRSRPRLLRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVI
Sbjct: 181 RPAPGARRSRPRLLRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVI 240
Query: 241 AGPQRSQEEKVKHPRGQSGGSCGQQGFSGHSQVLASPGHAQRLQH 285
AGPQRSQEEKVKHPRGQSGGSCGQQGFSGHSQVLASPGHAQRLQH
Sbjct: 241 AGPQRSQEEKVKHPRGQSGGSCGQQGFSGHSQVLASPGHAQRLQH 285
>gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo
sapiens]
Length = 272
Score = 532 bits (1371), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 29 ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR 88
ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR
Sbjct: 16 ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR 75
Query: 89 RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER 148
RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER
Sbjct: 76 RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER 135
Query: 149 HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASVWNEGDGSHG 208
HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASVWNEGDGSHG
Sbjct: 136 HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASVWNEGDGSHG 195
Query: 209 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFS 268
MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFS
Sbjct: 196 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFS 255
Query: 269 GHSQVLASPGHAQRLQH 285
GHSQVLASPGHAQRLQH
Sbjct: 256 GHSQVLASPGHAQRLQH 272
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 402 bits (1033), Expect = e-112
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MPCSRPAPRQWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVD 60
MPCSRPAPRQWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVD
Sbjct: 1 MPCSRPAPRQWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVD 60
Query: 61 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 120
PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR
Sbjct: 61 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 120
Query: 121 GRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGAR 180
GRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGAR
Sbjct: 121 GRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGAR 180
Query: 181 RPAPGARRSRPRLLRPAS 198
RPAPGARRSRPRLLRPAS
Sbjct: 181 RPAPGARRSRPRLLRPAS 198
Score = 32.3 bits (72), Expect = 0.49
Identities = 36/96 (37%), Positives = 38/96 (39%), Gaps = 24/96 (25%)
Query: 61 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPG-A 119
PA RR R L PA+ PR APRRR P G G PG
Sbjct: 182 PAPGARRSRPRL---LRPASPPPRPAPRRRSTAPRHEG----------------GRPGRG 222
Query: 120 RGRLAPARGGAARARLLAVEVRVAVQSER-HRHVGA 154
R R P GA ARL E+ A ER HR GA
Sbjct: 223 RTRRQPHLAGAGCARL---ELEGARMGERLHRRQGA 255
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 42.0 bits (97), Expect = 6e-04
Identities = 52/161 (32%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 8 PRQWVLRPL--PSP-----VLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVD 60
P W LR L PSP +L A V A+ + + P R +R+ A +
Sbjct: 4 PPAWPLRLLEPPSPAEPGRLLPVACVWAAASRVPGSLSPFTGLRP---ARLWGAGPALLW 60
Query: 61 PAGAGRRWRGGLRGGFAPAAAR---------------PRSAPRRRILGPGG-RGPQAEVP 104
GA RRWR G RGG P A+R P S GPG R P+A P
Sbjct: 61 GVGAARRWRSGCRGG-GPGASRGVLGLARLLGLWARGPGSCRCGAFAGPGAPRLPRARFP 119
Query: 105 LVLSE---------RHVPAGIPGARGRLAPARGGAARARLL 136
+ R PA PG +GRL PA G AR L
Sbjct: 120 GGPAAAAWAGDEAWRRGPAAPPGDKGRLRPAAAGLPEARKL 160
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 42.0 bits (97), Expect = 6e-04
Identities = 59/171 (34%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 92 LGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARG-GAARARLLAVEVRVAVQSERHR 150
LG G G Q EV VL E H P A GR ARG AAR R VE ++R
Sbjct: 121 LGVDGVG-QREVHRVLQEPHPGHAAPQAHGR--GARGIHAARGR--GVEAAAGAGAQR-- 173
Query: 151 HVGAVQLVPAPRQAAQAADTGPR-HASPGARRPAPGARRSRPRLLRPA-SVWNEGDGSHG 208
AAQA G R H +P RPA GAR + PA G G HG
Sbjct: 174 -------------AAQAVGAGGRSHVAPAGARPARGARAAE----HPAVGGRGHGPGGHG 216
Query: 209 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSG 259
R +WR +P G A E AV G + + PR +SG
Sbjct: 217 CGGWRWPGRRRWRGLAP-GEEANE----GAVGVGGGSAAASLARGPRSESG 262
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 42.0 bits (97), Expect = 6e-04
Identities = 59/171 (34%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 92 LGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARG-GAARARLLAVEVRVAVQSERHR 150
LG G G Q EV VL E H P A GR ARG AAR R VE ++R
Sbjct: 270 LGVDGVG-QREVHRVLQEPHPGHAAPQAHGR--GARGIHAARGR--GVEAAAGAGAQR-- 322
Query: 151 HVGAVQLVPAPRQAAQAADTGPR-HASPGARRPAPGARRSRPRLLRPA-SVWNEGDGSHG 208
AAQA G R H +P RPA GAR + PA G G HG
Sbjct: 323 -------------AAQAVGAGGRSHVAPAGARPARGARAAE----HPAVGGRGHGPGGHG 365
Query: 209 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSG 259
R +WR +P G A E AV G + + PR +SG
Sbjct: 366 CGGWRWPGRRRWRGLAP-GEEANE----GAVGVGGGSAAASLARGPRSESG 411
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 42.0 bits (97), Expect = 6e-04
Identities = 59/171 (34%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 92 LGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARG-GAARARLLAVEVRVAVQSERHR 150
LG G G Q EV VL E H P A GR ARG AAR R VE ++R
Sbjct: 270 LGVDGVG-QREVHRVLQEPHPGHAAPQAHGR--GARGIHAARGR--GVEAAAGAGAQR-- 322
Query: 151 HVGAVQLVPAPRQAAQAADTGPR-HASPGARRPAPGARRSRPRLLRPA-SVWNEGDGSHG 208
AAQA G R H +P RPA GAR + PA G G HG
Sbjct: 323 -------------AAQAVGAGGRSHVAPAGARPARGARAAE----HPAVGGRGHGPGGHG 365
Query: 209 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSG 259
R +WR +P G A E AV G + + PR +SG
Sbjct: 366 CGGWRWPGRRRWRGLAP-GEEANE----GAVGVGGGSAAASLARGPRSESG 411
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 41.6 bits (96), Expect = 8e-04
Identities = 62/217 (28%), Positives = 78/217 (35%), Gaps = 31/217 (14%)
Query: 2 PCSRPAPRQWVLRP---LPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQH 58
PC W++RP P+ A+ + S PP P R R R G H
Sbjct: 27 PCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSR---RHRAGCGAH 83
Query: 59 VDPAGAGRRWRGGLR----GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPA 114
P GR R G R G A A AR RSAP G GP A P PA
Sbjct: 84 -GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGP-AAAPEAAPPAWDPA 141
Query: 115 GIPGARGR-------LAPARGGAARAR-------LLAVEVRVAVQSERHRHVGAVQLVPA 160
+P +R R L P R G RA +L V A+ + G +
Sbjct: 142 TLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGPSILRVAPHPALPGAQVHWAGRHRWAAR 201
Query: 161 PRQAAQAADTGP----RHASPGARR-PAPGARRSRPR 192
++ Q+A GP SPG PAP + + R
Sbjct: 202 RGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASR 238
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 41.6 bits (96), Expect = 8e-04
Identities = 62/217 (28%), Positives = 78/217 (35%), Gaps = 31/217 (14%)
Query: 2 PCSRPAPRQWVLRP---LPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQH 58
PC W++RP P+ A+ + S PP P R R R G H
Sbjct: 27 PCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSR---RHRAGCGAH 83
Query: 59 VDPAGAGRRWRGGLR----GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPA 114
P GR R G R G A A AR RSAP G GP A P PA
Sbjct: 84 -GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGP-AAAPEAAPPAWDPA 141
Query: 115 GIPGARGR-------LAPARGGAARAR-------LLAVEVRVAVQSERHRHVGAVQLVPA 160
+P +R R L P R G RA +L V A+ + G +
Sbjct: 142 TLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAAR 201
Query: 161 PRQAAQAADTGP----RHASPGARR-PAPGARRSRPR 192
++ Q+A GP SPG PAP + + R
Sbjct: 202 RGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASR 238
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 41.6 bits (96), Expect = 8e-04
Identities = 62/217 (28%), Positives = 78/217 (35%), Gaps = 31/217 (14%)
Query: 2 PCSRPAPRQWVLRP---LPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQH 58
PC W++RP P+ A+ + S PP P R R R G H
Sbjct: 27 PCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSR---RHRAGCGAH 83
Query: 59 VDPAGAGRRWRGGLR----GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPA 114
P GR R G R G A A AR RSAP G GP A P PA
Sbjct: 84 -GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGP-AAAPEAAPPAWDPA 141
Query: 115 GIPGARGR-------LAPARGGAARAR-------LLAVEVRVAVQSERHRHVGAVQLVPA 160
+P +R R L P R G RA +L V A+ + G +
Sbjct: 142 TLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAAR 201
Query: 161 PRQAAQAADTGP----RHASPGARR-PAPGARRSRPR 192
++ Q+A GP SPG PAP + + R
Sbjct: 202 RGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASR 238
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 41.6 bits (96), Expect = 8e-04
Identities = 62/202 (30%), Positives = 78/202 (38%), Gaps = 37/202 (18%)
Query: 6 PAPRQWVLRPLPSPVLSA----AMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDP 61
P PRQ +P P L+A + V+ ASL S P P R G V + H+ P
Sbjct: 15 PWPRQ---QPALWPTLAALALLSSVAEASLGSAPRSPA--PREGP--PPVLASPAGHL-P 66
Query: 62 AGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARG 121
G RW G A RP P R P P L R AG PG+R
Sbjct: 67 GGRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSRA 115
Query: 122 RLAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPRH 174
R A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 116 RAAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG--- 170
Query: 175 ASPGARRPAPGARRSRPRLLRP 196
GA RP PG+R RP
Sbjct: 171 --AGALRPPPGSRPVSQPCCRP 190
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 41.6 bits (96), Expect = 8e-04
Identities = 62/202 (30%), Positives = 78/202 (38%), Gaps = 37/202 (18%)
Query: 6 PAPRQWVLRPLPSPVLSA----AMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDP 61
P PRQ +P P L+A + V+ ASL S P P R G V + H+ P
Sbjct: 15 PWPRQ---QPALWPTLAALALLSSVAEASLGSAPRSPA--PREGP--PPVLASPAGHL-P 66
Query: 62 AGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARG 121
G RW G A RP P R P P L R AG PG+R
Sbjct: 67 GGRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSRA 115
Query: 122 RLAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPRH 174
R A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 116 RAAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG--- 170
Query: 175 ASPGARRPAPGARRSRPRLLRP 196
GA RP PG+R RP
Sbjct: 171 --AGALRPPPGSRPVSQPCCRP 190
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 41.6 bits (96), Expect = 8e-04
Identities = 57/192 (29%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
Query: 74 GGFAPAAARPRSAPR-RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAAR 132
GG A RP R +R+LG G R R +PAG P R R AP G A
Sbjct: 3 GGDGAAFKRPGDGARLQRVLGLGSRR---------EPRSLPAGGPAPR-RTAPPPPGHAS 52
Query: 133 ARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPR 192
A A+ +A + L+ A AA PRH AR P +RR
Sbjct: 53 AGPAAMSSHIAKSESK------TSLLKAAAAAASGGSRAPRHGP--ARDPGLPSRRLPGS 104
Query: 193 LLRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQR-SQEEKV 251
PA+ + GD S L P R + R S R C +A+ A R S +
Sbjct: 105 C--PATPQSSGDPSSRRPLCRPAPREEGARGSQRVLPQAHCRPREALPAAASRPSPSSPL 162
Query: 252 KHPRGQSGGSCG 263
RG+ G G
Sbjct: 163 PPARGRDGEERG 174
Score = 29.3 bits (64), Expect = 4.1
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 24/157 (15%)
Query: 1 MPCSRPAPRQWVLRPLPSPVLSAAMVSR--ASLQSKPGIPPIPVRRGHCCSRVRVADGQH 58
+P PAPR+ P A +S A +SK + SR G
Sbjct: 33 LPAGGPAPRRTAPPPPGHASAGPAAMSSHIAKSESKTSLLKAAAAAASGGSRAP-RHGPA 91
Query: 59 VDPAGAGRRWRGGL----RGGFAPAAARP--RSAPR-------RRILGPGGRGPQAEVPL 105
DP RR G + P++ RP R APR +R+L P+ +P
Sbjct: 92 RDPGLPSRRLPGSCPATPQSSGDPSSRRPLCRPAPREEGARGSQRVLPQAHCRPREALPA 151
Query: 106 VLSERHVPAGIPGARGR------LAPARG--GAARAR 134
S + +P ARGR L+PA G G+ RAR
Sbjct: 152 AASRPSPSSPLPPARGRDGEERGLSPALGLRGSLRAR 188
>gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo
sapiens]
Length = 173
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/132 (31%), Positives = 50/132 (37%), Gaps = 35/132 (26%)
Query: 10 QWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWR 69
+W P+ V M+ R+ + G P+P R GH DGQ P+G
Sbjct: 74 EWAAPGAPAAVALVLMLLRSQ---RLGQQPLPRRPGH-------DDGQR--PSGGA---- 117
Query: 70 GGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGG 129
AAA R A RR P+ P R P G+PG G AP RG
Sbjct: 118 ---------AAAPRRGAQLRR--------PRHSHPT--RARRCPGGLPGHAGGAAPGRGA 158
Query: 130 AARARLLAVEVR 141
A RAR L R
Sbjct: 159 AGRARCLGPSAR 170
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 40.0 bits (92), Expect = 0.002
Identities = 59/212 (27%), Positives = 80/212 (37%), Gaps = 29/212 (13%)
Query: 65 GRRWRGGLRGGFAPAAARPR---SAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARG 121
G R G GG +A P S+P R+ P E P P ++G
Sbjct: 316 GSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTP-PARGKESPSPRSAPSSQG 374
Query: 122 RLAPARGGAARARLLAVEVRVAVQS-ERHRHVGAVQLVPAP--------RQAAQAADTGP 172
R A GGA R R R + S R G + PAP +A ++D+G
Sbjct: 375 RGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGS 434
Query: 173 RHASPGARRPAPGARR----------SRPRLLRPASVWNEGDGSHGMFLGTPHFRCQWRR 222
+PG P PG+ R RP RPAS + G+HG G P + R
Sbjct: 435 GRGAPGP-GPEPGSERGHGGHGKRAKERPPRARPAST-SPSPGAHGR-RGGPEGKSSSR- 490
Query: 223 HSPRGPRARECMALKAVIAGPQRSQEEKVKHP 254
SP GP R + ++ RS E++ P
Sbjct: 491 -SP-GPHPRSWSSSRSPSKSRSRSAEKRPHSP 520
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 39.7 bits (91), Expect = 0.003
Identities = 60/201 (29%), Positives = 76/201 (37%), Gaps = 34/201 (16%)
Query: 7 APRQWVLRPLPSPVLSA----AMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPA 62
AP +P P L+A + V+ ASL S P P R G V + H+ P
Sbjct: 30 APLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPA--PREGP--PPVLASPAGHL-PG 84
Query: 63 GAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR 122
G RW G A RP P R P P L R AG PG+R R
Sbjct: 85 GRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSRAR 133
Query: 123 LAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPRHA 175
A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 134 AAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG---- 187
Query: 176 SPGARRPAPGARRSRPRLLRP 196
GA RP PG+R RP
Sbjct: 188 -AGALRPPPGSRPVSQPCCRP 207
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 39.7 bits (91), Expect = 0.003
Identities = 60/201 (29%), Positives = 76/201 (37%), Gaps = 34/201 (16%)
Query: 7 APRQWVLRPLPSPVLSA----AMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPA 62
AP +P P L+A + V+ ASL S P P R G V + H+ P
Sbjct: 21 APLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPA--PREGP--PPVLASPAGHL-PG 75
Query: 63 GAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR 122
G RW G A RP P R P P L R AG PG+R R
Sbjct: 76 GRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSRAR 124
Query: 123 LAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPRHA 175
A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 125 AAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG---- 178
Query: 176 SPGARRPAPGARRSRPRLLRP 196
GA RP PG+R RP
Sbjct: 179 -AGALRPPPGSRPVSQPCCRP 198
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 39.7 bits (91), Expect = 0.003
Identities = 60/201 (29%), Positives = 76/201 (37%), Gaps = 34/201 (16%)
Query: 7 APRQWVLRPLPSPVLSA----AMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPA 62
AP +P P L+A + V+ ASL S P P R G V + H+ P
Sbjct: 21 APLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPA--PREGP--PPVLASPAGHL-PG 75
Query: 63 GAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR 122
G RW G A RP P R P P L R AG PG+R R
Sbjct: 76 GRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSRAR 124
Query: 123 LAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPRHA 175
A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 125 AAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG---- 178
Query: 176 SPGARRPAPGARRSRPRLLRP 196
GA RP PG+R RP
Sbjct: 179 -AGALRPPPGSRPVSQPCCRP 198
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 39.3 bits (90), Expect = 0.004
Identities = 65/214 (30%), Positives = 83/214 (38%), Gaps = 48/214 (22%)
Query: 77 APA-AARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAP-ARGGAARAR 134
APA AARP P RR P P V VL H P G+P LAP GG A
Sbjct: 166 APAPAARPSPDPGRRP-PPAAPAPVVHVGPVLPLLHDPVGVP-----LAPLGHGGVDWAE 219
Query: 135 LLAVEVRVAVQSERHRHVGAVQLVPAPRQA-AQAADTGPRHASPGARRPAPGARRSRPRL 193
R+ ++S+R R P+P A +Q +T ARRP P R RP L
Sbjct: 220 NKERPRRLRLRSQRFR-------PPSPGAARSQLPET--------ARRPRP---RPRPAL 261
Query: 194 LRPASVWNEGDGSHGMFLGTPHFRC------QWRRHSPRGPRARECM---ALKAVIAGPQ 244
R A G G RC +W R +P R + K + G
Sbjct: 262 PRRAREPQPGSGR----------RCRRDTAVRWPRQAPYSSRGHDLERPGRCKTGLWGHS 311
Query: 245 RSQEEKVK-HPRGQSGGSCGQQGFSGHSQVLASP 277
+++ P+ +S SC FS +Q LA P
Sbjct: 312 AHTSHRLRISPKSESAPSCRAAVFSA-TQSLALP 344
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 38.5 bits (88), Expect = 0.007
Identities = 42/181 (23%), Positives = 57/181 (31%), Gaps = 34/181 (18%)
Query: 4 SRPAPRQWVLRPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAG 63
S P +LR +P+P++ A +S ++ P P R G
Sbjct: 179 SPPVEHPRLLRSVPTPLVMAQKISERMAGNEALSPTSPFREGR----------------- 221
Query: 64 AGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRL 123
WR PAA PRS G GP P P+ I G
Sbjct: 222 -PGEWR-------TPAARGPRS---------GDPGPGPSHPAQPKAPRFPSNIIVTNGAA 264
Query: 124 APARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPA 183
R +RA + E R V + H H GA + A + P + G P
Sbjct: 265 REPRRTLSRAAVSVQERRAQVLATIHGHAGAFPAAGDAGEGAPGGGSSPERVARGRGLPG 324
Query: 184 P 184
P
Sbjct: 325 P 325
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 38.5 bits (88), Expect = 0.007
Identities = 63/251 (25%), Positives = 87/251 (34%), Gaps = 31/251 (12%)
Query: 56 GQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAG 115
G PA R W AP A P +AP GR +A+ + + G
Sbjct: 312 GHPTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQ--YIPGAQAATRG 369
Query: 116 IPGARGRLAP---ARGGAA-------RARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAA 165
+PG R P RG + R R R+A S R G+ + A R +
Sbjct: 370 LPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRR---GSPRARKASRSQS 426
Query: 166 QAADTGPRHASPGARRPAPGARRSRPRLLRP-----ASVWNEGDGSHGMFLGTPHF-RCQ 219
+ + G A P P A R PR RP ++ + GS + T
Sbjct: 427 ETSLLGRASAVPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAAD 486
Query: 220 WRRHSPRGPRAR-------ECMALKAVIAGPQRSQEEKVK---HPRGQSGGSCGQQGFSG 269
RR PR P AR + ++ G S E P G+ G + G G G
Sbjct: 487 GRRVRPRAPAARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYG 546
Query: 270 HSQVLASPGHA 280
S+ AS G +
Sbjct: 547 ESESSASEGES 557
Score = 28.5 bits (62), Expect = 7.0
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 85 SAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAV 144
SA RR GP + S R P G P +P GGA R ++ ++
Sbjct: 205 SAERRARAGPFLTPSPLHAVAMRSPR--PCGRPPTD---SPDAGGAGRP----LDGYISA 255
Query: 145 QSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPA 197
R R GA Q PR + AD GPR + +RP P A S P RPA
Sbjct: 256 LLRRRRRRGAGQ----PRTSPGGADGGPRRQNSVRQRP-PDASPS-PGSARPA 302
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 38.1 bits (87), Expect = 0.009
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 116 IPGAR-----GRLAPARGGAARARLLAVEVRVAVQSERHRHV--GAVQLVPAPRQAAQAA 168
+PG R G L+P R G+AR +L+A A + R + V G ++ A+
Sbjct: 67 VPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPR 126
Query: 169 DTGPRHASPGARR--PAPGARRSRP 191
PRH PG R PAPG R P
Sbjct: 127 LRRPRHRLPGGSRRLPAPGPRAPAP 151
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 38.1 bits (87), Expect = 0.009
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 116 IPGAR-----GRLAPARGGAARARLLAVEVRVAVQSERHRHV--GAVQLVPAPRQAAQAA 168
+PG R G L+P R G+AR +L+A A + R + V G ++ A+
Sbjct: 67 VPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPR 126
Query: 169 DTGPRHASPGARR--PAPGARRSRP 191
PRH PG R PAPG R P
Sbjct: 127 LRRPRHRLPGGSRRLPAPGPRAPAP 151
>gi|239742580 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 897
Score = 38.1 bits (87), Expect = 0.009
Identities = 68/287 (23%), Positives = 98/287 (34%), Gaps = 52/287 (18%)
Query: 19 PVLSAAMVSRASLQSKPGIPPIPVRRGHCC-SRVRVADGQHVDPAGAGRRWRGGLRGGFA 77
P S ++ +S + P V GH C ++ A GQ + P G R + R
Sbjct: 414 PASSHCQLAHSSSNTVSEDGPQAVSSGHRCENKAGTAPGQTLAPRGGSPRSQAS-RPHIN 472
Query: 78 PAA------------ARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAP 125
A +RP G G P ++ P + +++ P G +AP
Sbjct: 473 SALYVEDKAISDCRPSRPSHTLSSLATGASGGPPVSKAPTMDAQQDRPKS-QDCLGLVAP 531
Query: 126 ARGGAARARLLAVEVRVAVQSERHRHVGAV---------------------QLVPAPRQA 164
A V V ++HR G + L+PA A
Sbjct: 532 LASAAE------VPSTAPVSGKKHRPPGPLFSSSDPLPATSSHSRDSAQVTSLIPATFTA 585
Query: 165 AQAADTGPRHASPGARRPAPGARRSRPRLLRP--ASVWNEGDG--SHGMFLGTPHFRCQW 220
A + D G R PG PA A P L P S+ N DG SH + T R Q
Sbjct: 586 A-SRDAGMRRTRPGTSAPAAAAAALPPSTLNPTSGSLLNAVDGGPSHFLASATAAARAQR 644
Query: 221 R--RHSPRGPRARECMALKAVIAGPQRSQEE---KVKHPRGQSGGSC 262
R++ R +R LK + S E ++K RG + C
Sbjct: 645 SEVRYNQRSQTSRTRSCLKRNASSSSHSSTEGLQELKRRRGPASSHC 691
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 38.1 bits (87), Expect = 0.009
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 116 IPGAR-----GRLAPARGGAARARLLAVEVRVAVQSERHRHV--GAVQLVPAPRQAAQAA 168
+PG R G L+P R G+AR +L+A A + R + V G ++ A+
Sbjct: 67 VPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPR 126
Query: 169 DTGPRHASPGARR--PAPGARRSRP 191
PRH PG R PAPG R P
Sbjct: 127 LRRPRHRLPGGSRRLPAPGPRAPAP 151
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 38.1 bits (87), Expect = 0.009
Identities = 43/147 (29%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 64 AGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVL---------SERHVPA 114
AG GG +G R PRR GP G G +A L L SE P
Sbjct: 7 AGEAGPGGSQGRVVRMKRRGGRGPRR---GPAGGGEKALKRLKLAVEEFVHATSEGEAPG 63
Query: 115 GIPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPA--PRQAAQAADTGP 172
G G ++ GG + L E R ++ R + + P R A+ A +G
Sbjct: 64 GCEGRGAPVSFRPGGRKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEA-SGH 122
Query: 173 RHASPGARRPAPGARRSRPRLLRPASV 199
R + RPAP S PR RP+ V
Sbjct: 123 RQDTEERARPAPSRDPSPPRKPRPSRV 149
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 38.1 bits (87), Expect = 0.009
Identities = 61/254 (24%), Positives = 88/254 (34%), Gaps = 32/254 (12%)
Query: 35 PGIPPIPVRRGHCCS---RVRVADGQHVDPAGAG-------RRWRGGLRGGFAPAAARPR 84
P PP P RG S RVR + P+ AG +R + APA+ P
Sbjct: 491 PPKPPSP--RGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPS 548
Query: 85 SAPRRRILGPGGRGPQAEVP---LVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVR 141
AP P P AE P VL+ PA +A RLLA + R
Sbjct: 549 PAPSPTPAPPQKEQPPAETPTDAAVLTSPPAPAPPVTPSKPMAGTTDREEATRLLAEKRR 608
Query: 142 VA------------VQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRS 189
A +Q+ER + + QL A+ R AR A +
Sbjct: 609 QAREQREREEQERRLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEE 668
Query: 190 RPRLLR---PASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECM--ALKAVIAGPQ 244
+ RL + A + + HF+ Q + R R E M K+ ++ +
Sbjct: 669 QERLQKQKEEAEARSREEAERQRLEREKHFQQQEQERQERRKRLEEIMKRTRKSEVSETK 728
Query: 245 RSQEEKVKHPRGQS 258
+ Q+ K + G S
Sbjct: 729 QKQDSKEANANGSS 742
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 37.7 bits (86), Expect = 0.012
Identities = 50/188 (26%), Positives = 65/188 (34%), Gaps = 10/188 (5%)
Query: 10 QWVLRPLPSP-VLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRW 68
QW R P+P S+A + +S PG P R SR+R A PA A R
Sbjct: 28 QWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRAA------PAAAPRLL 81
Query: 69 RGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARG 128
L G APA + R R +A P R P P + R
Sbjct: 82 PRVLAG--APARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQPRSRHPHT 139
Query: 129 GAARARLLAVEVRVAVQSE-RHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGAR 187
RA A +R + R + + P P ++ + GP P R P PG
Sbjct: 140 RYPRAVPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDH 199
Query: 188 RSRPRLLR 195
R LR
Sbjct: 200 PRRSPALR 207
Score = 29.3 bits (64), Expect = 4.1
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 6 PAPRQWVLRPLPSPVLS-----------AAMVSRASLQSKPGIPPIPVRRGHCCSRVRVA 54
P R+W RP PSP L A+ L+ PG P R C S A
Sbjct: 115 PTGRRWRRRPGPSPPLQPRSRHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSSPFPA 174
Query: 55 DGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPRR 89
+ AG RG P A RP PRR
Sbjct: 175 RSRTPGEAGPP-------RGDPRPRAPRPGDHPRR 202
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 37.7 bits (86), Expect = 0.012
Identities = 51/177 (28%), Positives = 65/177 (36%), Gaps = 22/177 (12%)
Query: 28 RASLQSKPGIP-PIPVRRG--HCCSRVRVADGQHVDPAG-----AGRRWRGGLRGGFAPA 79
R+ L +P P + VR+G +R +G P G R WR G +PA
Sbjct: 67 RSPLLYQPTPPRSVCVRKGARKTVEALRPREGSPAAPIGDEEWVLRRIWRRTGAAGASPA 126
Query: 80 AARP-------RSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAAR 132
AR R A R G GP+ L R + +G AR PA AR
Sbjct: 127 GARSHPGRASRRGASDRARCARGLGGPRVAAASELVRRGLASGAARAR----PASPAPAR 182
Query: 133 ARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRS 189
LAV A R A P+P + + P S ARRP G RR+
Sbjct: 183 LLPLAVGASAAAGDTRRTEARAE---PSPSRRRRRRCCAPLPGSLPARRPGCGGRRA 236
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.012
Identities = 46/142 (32%), Positives = 50/142 (35%), Gaps = 11/142 (7%)
Query: 56 GQHV---DPAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHV 112
G HV PAGA G AA P A R R PGG GPQ P V
Sbjct: 59 GNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRAR---PGGGGPQRPGPPSPRRPLV 115
Query: 113 PAG-IPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTG 171
PAG P A P G A + VA E A PA A G
Sbjct: 116 PAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175
Query: 172 PRHA---SPGARRPA-PGARRS 189
P PG +PA PGA ++
Sbjct: 176 PGPGPGPGPGPGKPAGPGAAQT 197
Score = 29.3 bits (64), Expect = 4.1
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 139 EVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRP 191
EVR A HV + +P AA A P +PGA P A R+RP
Sbjct: 49 EVRAAAAGALGNHV----VSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARP 97
Score = 28.1 bits (61), Expect = 9.2
Identities = 31/117 (26%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 76 FAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARL 135
F AAA P A P P A P P A LA G A
Sbjct: 243 FVGAAAPPAPAAPSPPAAPAPAAPAA----------APPPPPPAPATLARPPGHPAGPPT 292
Query: 136 LAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPR 192
A V ++ GA PAP A +G A PAPG + P+
Sbjct: 293 AAPAVPPPAAAQNGGSAGAAP-APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPK 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,524,593
Number of Sequences: 37866
Number of extensions: 867508
Number of successful extensions: 4993
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 4581
Number of HSP's gapped (non-prelim): 769
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.