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Search of human proteins with 239748226
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748226 PREDICTED: hypothetical protein [Homo sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753749 PREDICTED: hypothetical protein [Homo sapiens] 322 9e-89
gi|239748226 PREDICTED: hypothetical protein [Homo sapiens] 322 9e-89
gi|239742127 PREDICTED: hypothetical protein [Homo sapiens] 322 9e-89
gi|169165751 PREDICTED: hypothetical protein [Homo sapiens] 198 1e-51
gi|169166086 PREDICTED: hypothetical protein [Homo sapiens] 198 1e-51
gi|169165286 PREDICTED: hypothetical protein [Homo sapiens] 198 1e-51
gi|239754132 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo ... 40 5e-04
gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo ... 40 5e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 40 0.001
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 40 0.001
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 40 0.001
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 40 0.001
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 39 0.002
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 39 0.002
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 38 0.003
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 37 0.006
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 37 0.006
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 37 0.006
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 35 0.023
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 35 0.023
gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens] 35 0.023
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 35 0.023
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 35 0.023
gi|239757751 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|13994190 frizzled 8 [Homo sapiens] 35 0.030
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 35 0.030
gi|239757315 PREDICTED: hypothetical protein [Homo sapiens] 34 0.039
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 34 0.039
gi|239751820 PREDICTED: hypothetical protein [Homo sapiens] 34 0.039
>gi|239753749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 322 bits (824), Expect = 9e-89
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES
Sbjct: 1 MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
Query: 61 CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ
Sbjct: 61 CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
Query: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
GHPRVAPQGRCKARAESGRARALLTSMA
Sbjct: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
>gi|239748226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 322 bits (824), Expect = 9e-89
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES
Sbjct: 1 MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
Query: 61 CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ
Sbjct: 61 CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
Query: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
GHPRVAPQGRCKARAESGRARALLTSMA
Sbjct: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
>gi|239742127 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 322 bits (824), Expect = 9e-89
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES
Sbjct: 1 MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
Query: 61 CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ
Sbjct: 61 CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
Query: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
GHPRVAPQGRCKARAESGRARALLTSMA
Sbjct: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
>gi|169165751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 198 bits (504), Expect = 1e-51
Identities = 100/138 (72%), Positives = 107/138 (77%)
Query: 11 VQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGAPRGR 70
+QGHSHQAQHL ARGPW +LR PPQPTA RAS+ WHRSGPQ VAL RR SCGSQ APRG+
Sbjct: 49 IQGHSHQAQHLPARGPWRVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGK 108
Query: 71 RPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQGR 130
R P RPA A GSARP G C A PRIR+GSPG H+SASAS GGS DWQG PR Q
Sbjct: 109 RQPLRPAPRAARGSARPLGFCPACPRIRRGSPGVHRSASASAGGGSGDWQGRPRGDHQRG 168
Query: 131 CKARAESGRARALLTSMA 148
C A+AESGRAR LLTSMA
Sbjct: 169 CGAQAESGRARPLLTSMA 186
>gi|169166086 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 198 bits (504), Expect = 1e-51
Identities = 100/138 (72%), Positives = 107/138 (77%)
Query: 11 VQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGAPRGR 70
+QGHSHQAQHL ARGPW +LR PPQPTA RAS+ WHRSGPQ VAL RR SCGSQ APRG+
Sbjct: 49 IQGHSHQAQHLPARGPWRVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGK 108
Query: 71 RPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQGR 130
R P RPA A GSARP G C A PRIR+GSPG H+SASAS GGS DWQG PR Q
Sbjct: 109 RQPLRPAPRAARGSARPLGFCPACPRIRRGSPGVHRSASASAGGGSGDWQGRPRGDHQRG 168
Query: 131 CKARAESGRARALLTSMA 148
C A+AESGRAR LLTSMA
Sbjct: 169 CGAQAESGRARPLLTSMA 186
>gi|169165286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 198 bits (504), Expect = 1e-51
Identities = 100/138 (72%), Positives = 107/138 (77%)
Query: 11 VQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGAPRGR 70
+QGHSHQAQHL ARGPW +LR PPQPTA RAS+ WHRSGPQ VAL RR SCGSQ APRG+
Sbjct: 49 IQGHSHQAQHLPARGPWRVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGK 108
Query: 71 RPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQGR 130
R P RPA A GSARP G C A PRIR+GSPG H+SASAS GGS DWQG PR Q
Sbjct: 109 RQPLRPAPRAARGSARPLGFCPACPRIRRGSPGVHRSASASAGGGSGDWQGRPRGDHQRG 168
Query: 131 CKARAESGRARALLTSMA 148
C A+AESGRAR LLTSMA
Sbjct: 169 CGAQAESGRARPLLTSMA 186
>gi|239754132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 40.4 bits (93), Expect = 5e-04
Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 58 RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
R S S R PPPR PA+ D G ARP PR R G PG H + S
Sbjct: 47 RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106
Query: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
RG G H RV G + A SG
Sbjct: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137
>gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo
sapiens]
Length = 217
Score = 40.4 bits (93), Expect = 5e-04
Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 58 RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
R S S R PPPR PA+ D G ARP PR R G PG H + S
Sbjct: 47 RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106
Query: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
RG G H RV G + A SG
Sbjct: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137
>gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo
sapiens]
Length = 217
Score = 40.4 bits (93), Expect = 5e-04
Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 58 RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
R S S R PPPR PA+ D G ARP PR R G PG H + S
Sbjct: 47 RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106
Query: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
RG G H RV G + A SG
Sbjct: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 62 GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
G++G R P +P P + G PPG C+ PR QG PG + R G +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839
Query: 122 HPRVAPQGRCKARAESG 138
P + R E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 62 GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
G++G R P +P P + G PPG C+ PR QG PG + R G +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839
Query: 122 HPRVAPQGRCKARAESG 138
P + R E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 62 GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
G++G R P +P P + G PPG C+ PR QG PG + R G +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839
Query: 122 HPRVAPQGRCKARAESG 138
P + R E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 62 GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
G++G R P +P P + G PPG C+ PR QG PG + R G +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839
Query: 122 HPRVAPQGRCKARAESG 138
P + R E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 58 RESCGSQGAPRGRRP---PPRPAVPADHGSARPPG--CCLASPRIRQGSPGAHQSASASE 112
RE+ +Q R RRP PRPA+P SA P C LA R R G+ + A A E
Sbjct: 212 REAAQAQTGLRRRRPLELVPRPALP----SAPSPRIRCFLAPGRSRVGAALTEEQA-AGE 266
Query: 113 RGGSWDWQGHPRVAPQGRCKAR---AESGRAR 141
W+ P P+G C AR +GRAR
Sbjct: 267 AAARGLWRRKPAPCPRGACAARLGGRGTGRAR 298
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 58 RESCGSQGAPRGRRP---PPRPAVPADHGSARPPG--CCLASPRIRQGSPGAHQSASASE 112
RE+ +Q R RRP PRPA+P SA P C LA R R G+ + A A E
Sbjct: 212 REAAQAQTGLRRRRPLELVPRPALP----SAPSPRIRCFLAPGRSRVGAALTEEQA-AGE 266
Query: 113 RGGSWDWQGHPRVAPQGRCKAR---AESGRAR 141
W+ P P+G C AR +GRAR
Sbjct: 267 AAARGLWRRKPAPCPRGACAARLGGRGTGRAR 298
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 38.1 bits (87), Expect = 0.003
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 13 GHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRS----GPQHVALIRRESCGSQGAPR 68
G + + L A GP P PP P A A S +L++ + + G R
Sbjct: 25 GSRREPRSLPAGGPAPRRTAPPPPGHASAGPAAMSSHIAKSESKTSLLKAAAAAASGGSR 84
Query: 69 GRRPPPR--PAVPADHGSARPPGCCLASPRIRQGSPGAHQ---SASASERGGSWDWQGHP 123
R P P +P S R PG C A+P+ G P + + + E G +G
Sbjct: 85 APRHGPARDPGLP----SRRLPGSCPATPQ-SSGDPSSRRPLCRPAPREEGA----RGSQ 135
Query: 124 RVAPQGRCKAR 134
RV PQ C+ R
Sbjct: 136 RVLPQAHCRPR 146
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 37.0 bits (84), Expect = 0.006
Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 4 PPTPSCRVQGHSHQAQHLLARGPWPLLRW-PPQPTAARASEIWHRSGPQHVALIRRESC- 61
PP G H+ + P RW PP P AA A+ HR P SC
Sbjct: 96 PPPLGAATAGSRHRQK---PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152
Query: 62 -GSQGAPRGRRPPPRPA---VPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSW 117
S G+ RR P PA VP R P P QG G+ A S RG
Sbjct: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP----TPPAGPQGFAGSF-CAEGSRRGAEV 207
Query: 118 DWQGHPRVAPQG 129
W ++ PQG
Sbjct: 208 GW---GKLEPQG 216
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 37.0 bits (84), Expect = 0.006
Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 4 PPTPSCRVQGHSHQAQHLLARGPWPLLRW-PPQPTAARASEIWHRSGPQHVALIRRESC- 61
PP G H+ + P RW PP P AA A+ HR P SC
Sbjct: 96 PPPLGAATAGSRHRQK---PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152
Query: 62 -GSQGAPRGRRPPPRPA---VPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSW 117
S G+ RR P PA VP R P P QG G+ A S RG
Sbjct: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP----TPPAGPQGFAGSF-CAEGSRRGAEV 207
Query: 118 DWQGHPRVAPQG 129
W ++ PQG
Sbjct: 208 GW---GKLEPQG 216
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 37.0 bits (84), Expect = 0.006
Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 4 PPTPSCRVQGHSHQAQHLLARGPWPLLRW-PPQPTAARASEIWHRSGPQHVALIRRESC- 61
PP G H+ + P RW PP P AA A+ HR P SC
Sbjct: 96 PPPLGAATAGSRHRQK---PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152
Query: 62 -GSQGAPRGRRPPPRPA---VPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSW 117
S G+ RR P PA VP R P P QG G+ A S RG
Sbjct: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP----TPPAGPQGFAGSF-CAEGSRRGAEV 207
Query: 118 DWQGHPRVAPQG 129
W ++ PQG
Sbjct: 208 GW---GKLEPQG 216
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 35.0 bits (79), Expect = 0.023
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 66 APRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRV 125
APR R+P P AVP GS R P L S R R+G PG H S S R +G +
Sbjct: 81 APRARQPVPHRAVPR-QGSLREP---LPSRRGRRGPPG-HAPPSPSLRR-----RGARAL 130
Query: 126 APQGRCKARAESGRARAL 143
P +ARA R L
Sbjct: 131 QPSAAARARARVPRGLRL 148
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 35.0 bits (79), Expect = 0.023
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 66 APRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRV 125
APR R+P P AVP GS R P L S R R+G PG H S S R +G +
Sbjct: 81 APRARQPVPHRAVPR-QGSLREP---LPSRRGRRGPPG-HAPPSPSLRR-----RGARAL 130
Query: 126 APQGRCKARAESGRARAL 143
P +ARA R L
Sbjct: 131 QPSAAARARARVPRGLRL 148
>gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]
Length = 439
Score = 35.0 bits (79), Expect = 0.023
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 58 RESCGSQGAPRGRRPPPRPAVPADH-GSARPPGCCLASPRIRQGSPGAHQSASASERGGS 116
R+S G P R PPR PA GSA G QG PG H+ A R GS
Sbjct: 369 RDSSPCVGLPAASRGPPRAGAPASRTGSATSAGTVG-----EQGRPGTHERPGAKPRAGS 423
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 35.0 bits (79), Expect = 0.023
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 33 PPQPTAA--RASEIWHRSGPQHVALIRRESCGSQGAPRGRR--------PPPRPAVPADH 82
PP P AA RA+E+ P E APR R PPP P P
Sbjct: 49 PPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108
Query: 83 GSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQG 129
A P PR SPGA +S ++ GS + HPR +G
Sbjct: 109 PPAAPSPPAAPGPRGGGASPGARRS-DFLQKTGSNSFTVHPRGLHRG 154
Score = 30.0 bits (66), Expect = 0.74
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 39 ARASEIWHRSGPQHVALIRR---ESCGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASP 95
AR S+ ++G + R G++ G P A PA+ + PPG P
Sbjct: 130 ARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKP 189
Query: 96 RIRQGSPGAHQSAS 109
++ G P H S
Sbjct: 190 KVESGDPSLHPPPS 203
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 35.0 bits (79), Expect = 0.023
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 33 PPQPTAA--RASEIWHRSGPQHVALIRRESCGSQGAPRGRR--------PPPRPAVPADH 82
PP P AA RA+E+ P E APR R PPP P P
Sbjct: 49 PPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108
Query: 83 GSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQG 129
A P PR SPGA +S ++ GS + HPR +G
Sbjct: 109 PPAAPSPPAAPGPRGGGASPGARRS-DFLQKTGSNSFTVHPRGLHRG 154
Score = 30.0 bits (66), Expect = 0.74
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 39 ARASEIWHRSGPQHVALIRR---ESCGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASP 95
AR S+ ++G + R G++ G P A PA+ + PPG P
Sbjct: 130 ARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKP 189
Query: 96 RIRQGSPGAHQSAS 109
++ G P H S
Sbjct: 190 KVESGDPSLHPPPS 203
>gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 327
Score = 34.7 bits (78), Expect = 0.030
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 2 GRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHR-------SGPQHVA 54
G P TP R + ARG W + QP+ + +W R SGP
Sbjct: 55 GVPHTPGTRELNTRCLKFEISARGRWAVFHH--QPSTPKGRCVWRRAGAGIVRSGPGLHG 112
Query: 55 LIRRESCGSQGAPRGRRPPPR-PAVPADHGSARPPG 89
+ ++ G++ R RR PPR P++P G A+ PG
Sbjct: 113 ALGPDTGGAKLRVRPRRTPPRDPSLPV-LGGAKEPG 147
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.030
Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 28/158 (17%)
Query: 3 RPPTPSCRVQGHSHQAQHLLARGPWPLLR-----WPPQPTAARASEIWHRSGPQHVALI- 56
+ P P CR +A G PL+R WP + R E + P + +
Sbjct: 101 KKPLPPCRSVCERAKA------GCAPLMRQYGFAWPDRMRCDRLPE---QGNPDTLCMDY 151
Query: 57 -RRESCGSQGAPRGRRPPPRPAV--PADHGSARPPGCCLASPRIRQG--SPGAHQSASAS 111
R + + +P R PPP P P+ G RPPG A P R G G +A+
Sbjct: 152 NRTDLTTAAPSPPRRLPPPPPGEQPPSGSGHGRPPG---ARPPHRGGGRGGGGGDAAAPP 208
Query: 112 ERGGSWDWQGHPRVAPQGRCKARAESG-RARALLTSMA 148
RGG G + P G A E G + RA + S++
Sbjct: 209 ARGGG----GGGKARPPGGGAAPCEPGCQCRAPMVSVS 242
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 34.7 bits (78), Expect = 0.030
Identities = 42/165 (25%), Positives = 58/165 (35%), Gaps = 45/165 (27%)
Query: 14 HSHQAQHLLARGPWPLLRWPPQPTAARASEIWHR--SGPQHVALIRRESCGSQGAPRGRR 71
H+ Q + + AR W L + R S +W +G + + S G P G
Sbjct: 413 HASQGERVAARKRWGLAQH------VRCSGLWGHGTAGRERCSQDSASPASSTGLPEGSE 466
Query: 72 PPPR--PAVPADH-GSARP-----------------PGCCL-------------ASPRIR 98
P P P D SA P PG C+ +PR R
Sbjct: 467 PESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCIDGAGLGGPEQGGRLTPRAR 526
Query: 99 -QGSPGAHQSASASERGGSWDWQGHPRVAPQGRCKARAESGRARA 142
+ + SAS GS +W G P+ P KARAE+ + A
Sbjct: 527 SEEGASSDSSASTGSHEGSSEWGGRPQGCPG---KARAETSQQEA 568
>gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 34.3 bits (77), Expect = 0.039
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 57 RRESCGSQGAPRGRRPPPRPAVPADHGSARP-PGCCLASPRIRQGSPGAHQSASAS-ERG 114
R + G + A +PPP P VPA S +P P S +R P + + AS R
Sbjct: 60 RPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRA 119
Query: 115 GSWDWQGHPRVAPQG 129
W GHP+ A +G
Sbjct: 120 RRW---GHPQDAQKG 131
>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 34.3 bits (77), Expect = 0.039
Identities = 35/105 (33%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 36 PTAARASEIWHRSGPQHVALIRRESCGSQ---------GAPRGRRPPPRPAVPADHGSAR 86
P AR R+ +H+ RR SC S+ GAP R PPPRP + G AR
Sbjct: 17 PPLARRLPGHQRASGRHLRR-RRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGPAR 75
Query: 87 PPGCCLASPRIRQGSPGAHQSASASERG---GSWDWQGHPRVAPQ 128
S R R S G +A RG G W R AP+
Sbjct: 76 LGAAAGPSSRARP-SRGERPWLAAQLRGLQVGQCCWGHRRRSAPE 119
>gi|239751820 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 34.3 bits (77), Expect = 0.039
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 57 RRESCGSQGAPRGRRPPPRPAVPADHGSARP-PGCCLASPRIRQGSPGAHQSASAS-ERG 114
R + G + A +PPP P VPA S +P P S +R P + + AS R
Sbjct: 60 RPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRA 119
Query: 115 GSWDWQGHPRVAPQG 129
W GHP+ A +G
Sbjct: 120 RRW---GHPQDAQKG 131
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,871,112
Number of Sequences: 37866
Number of extensions: 573781
Number of successful extensions: 4511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 3761
Number of HSP's gapped (non-prelim): 1169
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.