Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293385 Sequence: fasta or formatted (146aa) NCBI GI: 239754468
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         16           3
 C cysteine            3.4          5           2
 D aspartate           0.7          1           1
 E glutamate           3.4          5           1
 F phenylalanine       2.1          3           1
 G glycine            10.3         15           1
 H histidine           2.7          4           1
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine             7.5         11           1
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            14.4         21           3
 Q glutamine           4.1          6           1
 R arginine           19.9         29           4
 S serine              8.2         12           2
 T threonine           2.1          3           1
 V valine              5.5          8           1
 W tryptophan          2.1          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290381          0.919   PREDICTED: hypothetical protein XP_002346884 
LOC100289601          0.919   PREDICTED: hypothetical protein XP_002342725 
LOC100291136          0.063   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.063   PREDICTED: hypothetical protein XP_002343480 
SRRM1                 0.056   serine/arginine repetitive matrix 1 
ZNF716                0.053   PREDICTED: zinc finger protein 716 
LOC100290769          0.049   PREDICTED: hypothetical protein XP_002346861 
LOC100287407          0.049   PREDICTED: hypothetical protein XP_002342704 
LOC729575             0.049   PREDICTED: hypothetical protein 
LOC100288110          0.049   PREDICTED: hypothetical protein 
LOC100288110          0.049   PREDICTED: hypothetical protein XP_002343007 
PRR12                 0.049   proline rich 12 
LOC100130431          0.049   PREDICTED: hypothetical protein 
LOC100130431          0.049   PREDICTED: hypothetical protein 
LOC100130431          0.049   PREDICTED: hypothetical protein 
KIAA0368              0.046   KIAA0368 protein 
SORCS2                0.042   VPS10 domain receptor protein SORCS 2 
ZBTB22                0.042   zinc finger and BTB domain containing 22 
ZBTB22                0.042   zinc finger and BTB domain containing 22 
LOC401399             0.042   hypothetical protein LOC401399 
LOC100292745          0.042   PREDICTED: hypothetical protein 
LOC100290074          0.042   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.042   PREDICTED: hypothetical protein XP_002342693 
APC2                  0.042   adenomatosis polyposis coli 2 
GNAS                  0.039   GNAS complex locus alex 
C10orf95              0.039   hypothetical protein LOC79946 
LOC645321             0.039   PREDICTED: hypothetical protein 
FLJ22184              0.039   PREDICTED: hypothetical protein LOC80164 
LOC645321             0.039   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press