Guide to the Human Genome
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Name: LOC100132405 Sequence: fasta or formatted (148aa) NCBI GI: 239748226
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {148aa} PREDICTED: hypothetical protein
alt mRNA {148aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         20           2
 C cysteine            3.4          5           2
 D aspartate           1.4          2           1
 E glutamate           2.7          4           1
 F phenylalanine       0.0          0           0
 G glycine            10.8         16           2
 H histidine           5.4          8           1
 I isoleucine          2.0          3           1
 K lysine              0.7          1           1
 L leucine             5.4          8           2
 M methionine          1.4          2           1
 N asparagine          0.0          0           0
 P proline            14.2         21           3
 Q glutamine           6.8         10           1
 R arginine           14.2         21           2
 S serine             10.1         15           1
 T threonine           2.0          3           1
 V valine              2.7          4           1
 W tryptophan          3.4          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132405          1.000   PREDICTED: hypothetical protein 
LOC100132405          1.000   PREDICTED: hypothetical protein 
LOC100133263          0.582   PREDICTED: hypothetical protein 
LOC100133263          0.582   PREDICTED: hypothetical protein 
LOC100133263          0.582   PREDICTED: hypothetical protein 
LOC100292600          0.051   PREDICTED: hypothetical protein 
LOC100290191          0.051   PREDICTED: hypothetical protein XP_002346744 
LOC100289641          0.051   PREDICTED: hypothetical protein XP_002342602 
COL4A3                0.051   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.051   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.051   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.051   alpha 3 type IV collagen isoform 1 precursor 
LOC100291533          0.047   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.047   PREDICTED: hypothetical protein XP_002342946 
CABP1                 0.044   calcium binding protein 1 isoform 3 
LOC100293249          0.040   PREDICTED: similar to hCG2040393 
LOC100291245          0.040   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.040   PREDICTED: hypothetical protein XP_002342883 
LRRC38                0.034   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.034   PREDICTED: leucine rich repeat containing 38 
GJC2                  0.034   gap junction protein, gamma 2, 47kDa 
C9orf75               0.034   hypothetical protein LOC286262 isoform 2 
C9orf75               0.034   hypothetical protein LOC286262 isoform 1 
LOC100293526          0.034   PREDICTED: hypothetical protein 
FZD8                  0.034   frizzled 8 
RP1L1                 0.034   retinitis pigmentosa 1-like 1 
LOC100293168          0.030   PREDICTED: hypothetical protein 
LOC100293385          0.030   PREDICTED: hypothetical protein 
LOC100287177          0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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