Guide to the Human Genome
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Name: LOC100294448 Sequence: fasta or formatted (384aa) NCBI GI: 239747867
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         39           2
 C cysteine            3.4         13           2
 D aspartate           2.3          9           1
 E glutamate           5.5         21           2
 F phenylalanine       0.5          2           1
 G glycine            11.2         43           2
 H histidine           3.9         15           2
 I isoleucine          1.0          4           1
 K lysine              2.6         10           2
 L leucine            11.2         43           2
 M methionine          0.8          3           1
 N asparagine          0.8          3           1
 P proline            12.5         48           2
 Q glutamine           6.0         23           1
 R arginine            5.7         22           2
 S serine              9.1         35           2
 T threonine           4.2         16           1
 V valine              5.5         21           3
 W tryptophan          3.1         12           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
ZNF541                0.027   zinc finger protein 541 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.025   nascent polypeptide-associated complex alpha subuni...
NKX1-1                0.024   PREDICTED: NK1 homeobox 1 
KLF14                 0.022   Kruppel-like factor 14 
LOC100287104          0.022   PREDICTED: hypothetical protein XP_002343630 
LOC730036             0.022   PREDICTED: hypothetical protein 
C10orf47              0.019   hypothetical protein LOC254427 
COL1A1                0.019   alpha 1 type I collagen preproprotein 
KHSRP                 0.019   KH-type splicing regulatory protein 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.019   PREDICTED: hypothetical protein LOC80164 
AGAP2                 0.018   centaurin, gamma 1 isoform PIKE-L 
TAF4                  0.018   TBP-associated factor 4 
TNIK                  0.018   TRAF2 and NCK interacting kinase isoform 7 
TNIK                  0.018   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.018   TRAF2 and NCK interacting kinase isoform 3 
TNIK                  0.018   TRAF2 and NCK interacting kinase isoform 1 
BEAN                  0.018   brain expressed, associated with Nedd4 
COL5A2                0.018   alpha 2 type V collagen preproprotein 
LOC100287250          0.018   PREDICTED: hypothetical protein XP_002344493 
LOC100130360          0.018   PREDICTED: hypothetical protein 
RBM33                 0.018   RNA binding motif protein 33 
RIN3                  0.018   Ras and Rab interactor 3 
APC2                  0.016   adenomatosis polyposis coli 2 
LOC100292172          0.016   PREDICTED: hypothetical protein 
LOC100293848          0.016   PREDICTED: hypothetical protein 
LOC100290829          0.016   PREDICTED: hypothetical protein XP_002346522 
LOC100288535          0.016   PREDICTED: hypothetical protein XP_002342360 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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