Guide to the Human Genome
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Search of human proteins with 239747816

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747816 PREDICTED: upstream binding transcription factor,
RNA polymerase I-like 6 [Homo sapiens]
         (400 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747816 PREDICTED: upstream binding transcription factor, R...   824   0.0  
gi|239753269 PREDICTED: upstream binding transcription factor, R...   820   0.0  
gi|239741686 PREDICTED: upstream binding transcription factor, R...   820   0.0  
gi|239741668 PREDICTED: upstream binding transcription factor, R...   799   0.0  
gi|169163306 PREDICTED: upstream binding transcription factor, R...   797   0.0  
gi|221136785 upstream binding transcription factor, RNA polymera...   718   0.0  
gi|115529449 upstream binding transcription factor, RNA polymera...   282   4e-76
gi|115529451 upstream binding transcription factor, RNA polymera...   282   4e-76
gi|7657671 upstream binding transcription factor, RNA polymerase...   253   2e-67
gi|4507401 transcription factor A, mitochondrial [Homo sapiens]        66   6e-11
gi|83715964 high-mobility group 20B [Homo sapiens]                     52   1e-06
gi|4504425 high-mobility group box 1 [Homo sapiens]                    50   4e-06
gi|169212060 PREDICTED: high mobility group protein B3-like prot...    49   1e-05
gi|239745831 PREDICTED: high mobility group protein B3-like prot...    49   1e-05
gi|8922633 high-mobility group 20A [Homo sapiens]                      49   1e-05
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho...    48   2e-05
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho...    48   2e-05
gi|113416897 PREDICTED: similar to high mobility group box 3 iso...    48   2e-05
gi|194688135 high-mobility group box 2 [Homo sapiens]                  46   5e-05
gi|194688133 high-mobility group box 2 [Homo sapiens]                  46   5e-05
gi|11321591 high-mobility group box 2 [Homo sapiens]                   46   5e-05
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]            46   5e-05
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]           46   7e-05
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]           46   7e-05
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]           46   7e-05
gi|239742753 PREDICTED: similar to high mobility group box 3 iso...    46   7e-05
gi|71143137 high-mobility group box 3 [Homo sapiens]                   46   7e-05
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]       46   7e-05
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re...    45   9e-05
gi|71061468 centromere protein E [Homo sapiens]                        44   2e-04

>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score =  824 bits (2128), Expect = 0.0
 Identities = 400/400 (100%), Positives = 400/400 (100%)

Query: 1   MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
           MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG
Sbjct: 1   MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60

Query: 61  EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
           EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE
Sbjct: 61  EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120

Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
           NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD
Sbjct: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180

Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240
           LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH
Sbjct: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240

Query: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
           QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP
Sbjct: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300

Query: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
           EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT
Sbjct: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360

Query: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
           IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400


>gi|239753269 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score =  820 bits (2117), Expect = 0.0
 Identities = 398/400 (99%), Positives = 399/400 (99%)

Query: 1   MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
           MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG
Sbjct: 1   MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60

Query: 61  EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
           EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE
Sbjct: 61  EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120

Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
           NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD
Sbjct: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180

Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240
           LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGY KFH
Sbjct: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFH 240

Query: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
           QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP
Sbjct: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300

Query: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
           EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT
Sbjct: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360

Query: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
           IWVNCQVSMEPE+NRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 361 IWVNCQVSMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400


>gi|239741686 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 6 [Homo sapiens]
          Length = 400

 Score =  820 bits (2117), Expect = 0.0
 Identities = 398/400 (99%), Positives = 399/400 (99%)

Query: 1   MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
           MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG
Sbjct: 1   MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60

Query: 61  EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
           EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE
Sbjct: 61  EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120

Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
           NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD
Sbjct: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180

Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240
           LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGY KFH
Sbjct: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFH 240

Query: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
           QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP
Sbjct: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300

Query: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
           EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT
Sbjct: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360

Query: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
           IWVNCQVSMEPE+NRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 361 IWVNCQVSMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400


>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 3 [Homo sapiens]
          Length = 457

 Score =  799 bits (2063), Expect = 0.0
 Identities = 388/398 (97%), Positives = 393/398 (98%)

Query: 3   AKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEM 62
           AKDIK+ALPRSQGHWSNADILRLLECMENNLP DDNGTFSSTQSHMDWGKVAFKNFSGEM
Sbjct: 60  AKDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEM 119

Query: 63  CRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENW 122
           CRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR LTAYIRFFKENW
Sbjct: 120 CRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENW 179

Query: 123 PQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLD 182
           PQYSQMYPGMRSQE+TKILSKKYKELPEQMKQK+IQDF+KEKQEFEEKL RFREEHPDLD
Sbjct: 180 PQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLD 239

Query: 183 QKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD 242
           QKGKKSDI KR+QTKVQKKVQKNIEEV SLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD
Sbjct: 240 QKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD 299

Query: 243 SWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPED 302
           SWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPED
Sbjct: 300 SWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPED 359

Query: 303 YAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIW 362
           YAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIW
Sbjct: 360 YAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIW 419

Query: 363 VNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
           VNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 420 VNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 457


>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
           polymerase I-like 5 [Homo sapiens]
          Length = 471

 Score =  797 bits (2059), Expect = 0.0
 Identities = 387/397 (97%), Positives = 392/397 (98%)

Query: 4   KDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMC 63
           KDIK+ALPRSQGHWSNADILRLLECMENNLP DDNGTFSSTQSHMDWGKVAFKNFSGEMC
Sbjct: 75  KDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMC 134

Query: 64  RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWP 123
           RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR LTAYIRFFKENWP
Sbjct: 135 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWP 194

Query: 124 QYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQ 183
           QYSQMYPGMRSQE+TKILSKKYKELPEQMKQK+IQDF+KEKQEFEEKL RFREEHPDLDQ
Sbjct: 195 QYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQ 254

Query: 184 KGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 243
           KGKKSDI KR+QTKVQKKVQKNIEEV SLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS
Sbjct: 255 KGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 314

Query: 244 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 303
           WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY
Sbjct: 315 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 374

Query: 304 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 363
           AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV
Sbjct: 375 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 434

Query: 364 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
           NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 435 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471


>gi|221136785 upstream binding transcription factor, RNA polymerase
           I-like 1 [Homo sapiens]
          Length = 393

 Score =  718 bits (1853), Expect = 0.0
 Identities = 347/393 (88%), Positives = 367/393 (93%)

Query: 8   VALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 67
           +ALPRSQGHWSN DILRLLECMENN P DDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 1   MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60

Query: 68  LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQ 127
           LEISC+LRKF TLK+LVLEAKKCVK  NKSQK RN PDFPKR LTAY RFFKE+WPQYSQ
Sbjct: 61  LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120

Query: 128 MYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKK 187
           MYPGMRSQE+TKILSKKY+ELPEQMKQK+IQDFRKEKQEFEEKLARFREEHPDL QK KK
Sbjct: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180

Query: 188 SDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 247
           S + KR Q KVQKK QKNIEEVRSLPKTD+FFKKVKFHGEPQKPPMNGYHKFHQDSWSSK
Sbjct: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240

Query: 248 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 307
           E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300

Query: 308 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 367
           ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360

Query: 368 SMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
           SMEPEENRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score =  282 bits (721), Expect = 4e-76
 Identities = 156/370 (42%), Positives = 224/370 (60%), Gaps = 42/370 (11%)

Query: 5   DIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 64
           D+++A P+ Q  WS  D+L LLECM+NNLP +D+  F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10  DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69

Query: 65  LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQ 124
           LKW+EIS  +RKF TL +L+L+A++ VKN  K +K + HPDFPK+ LT Y RFF E   +
Sbjct: 70  LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129

Query: 125 YSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQK 184
           Y++++P M + ++TKILSKKYKELPE+ K K+IQDF++EKQEFE  LARFRE+HPDL Q 
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189

Query: 185 GKKSDICKRVQTK------------------------VQKKVQKNIEE----VRSLPKTD 216
            KKSDI ++ +T                         +QK  + NI E      +L K +
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAE 249

Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
           +  K  KF G P KPP N Y  +  +  ++  ++ +   ERMV   ++W+ + Q +KD Y
Sbjct: 250 RQLKD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAY 306

Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAY-----------KESTYAKGKNMAMMGGPAP 325
             + +  +K+Y+VEL  +L++L  E+               K++T    K  A  GG   
Sbjct: 307 HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGG 366

Query: 326 SLKQTDPQSS 335
           S K   P S+
Sbjct: 367 SEKPKRPVSA 376



 Score =  179 bits (453), Expect = 5e-45
 Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 49/364 (13%)

Query: 81  KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEV 137
           K L +  K+     +K    + G+   + PKR ++A   F +E   Q  +  P +   E+
Sbjct: 341 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 400

Query: 138 TKILSKKYKELPEQMKQKH--------IQDFRKEKQEFEEK------------------- 170
           T++L++ + +L E+ K K+         Q  RK   E EE+                   
Sbjct: 401 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 460

Query: 171 ---LARFREEHP-----------DLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTD 216
              LARF+ +             ++++K K   I K  +   QK+ ++ + E+R+ P   
Sbjct: 461 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 518

Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
              KK+KF GEP+KPPMNGY KF Q+  S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 519 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 578

Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 336
           K  AE  QK+YKV LDLW+K+LSP+D AAYKE    K K+M  + GP P   +T  QS S
Sbjct: 579 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 638

Query: 337 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 393
                  ++   E +  +    E   +       S    E+  +DG+E E  +  +    
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698

Query: 394 EDME 397
           +D E
Sbjct: 699 DDDE 702


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score =  282 bits (721), Expect = 4e-76
 Identities = 156/370 (42%), Positives = 224/370 (60%), Gaps = 42/370 (11%)

Query: 5   DIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 64
           D+++A P+ Q  WS  D+L LLECM+NNLP +D+  F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10  DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69

Query: 65  LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQ 124
           LKW+EIS  +RKF TL +L+L+A++ VKN  K +K + HPDFPK+ LT Y RFF E   +
Sbjct: 70  LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129

Query: 125 YSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQK 184
           Y++++P M + ++TKILSKKYKELPE+ K K+IQDF++EKQEFE  LARFRE+HPDL Q 
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189

Query: 185 GKKSDICKRVQTK------------------------VQKKVQKNIEE----VRSLPKTD 216
            KKSDI ++ +T                         +QK  + NI E      +L K +
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAE 249

Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
           +  K  KF G P KPP N Y  +  +  ++  ++ +   ERMV   ++W+ + Q +KD Y
Sbjct: 250 RQLKD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAY 306

Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAY-----------KESTYAKGKNMAMMGGPAP 325
             + +  +K+Y+VEL  +L++L  E+               K++T    K  A  GG   
Sbjct: 307 HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGG 366

Query: 326 SLKQTDPQSS 335
           S K   P S+
Sbjct: 367 SEKPKRPVSA 376



 Score =  179 bits (453), Expect = 5e-45
 Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 49/364 (13%)

Query: 81  KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEV 137
           K L +  K+     +K    + G+   + PKR ++A   F +E   Q  +  P +   E+
Sbjct: 341 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 400

Query: 138 TKILSKKYKELPEQMKQKH--------IQDFRKEKQEFEEK------------------- 170
           T++L++ + +L E+ K K+         Q  RK   E EE+                   
Sbjct: 401 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 460

Query: 171 ---LARFREEHP-----------DLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTD 216
              LARF+ +             ++++K K   I K  +   QK+ ++ + E+R+ P   
Sbjct: 461 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 518

Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
              KK+KF GEP+KPPMNGY KF Q+  S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 519 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 578

Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 336
           K  AE  QK+YKV LDLW+K+LSP+D AAYKE    K K+M  + GP P   +T  QS S
Sbjct: 579 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 638

Query: 337 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 393
                  ++   E +  +    E   +       S    E+  +DG+E E  +  +    
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698

Query: 394 EDME 397
           +D E
Sbjct: 699 DDDE 702


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score =  253 bits (647), Expect = 2e-67
 Identities = 151/407 (37%), Positives = 220/407 (54%), Gaps = 79/407 (19%)

Query: 5   DIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 64
           D+++A P+ Q  WS  D+L LLECM+NNLP +D+  F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10  DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69

Query: 65  LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQ 124
           LKW+EIS  +RKF TL +L+L+A++ VKN  K +K + HPDFPK+ LT Y RFF E   +
Sbjct: 70  LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129

Query: 125 YSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEH------ 178
           Y++++P M + ++TKILSKKYKELPE+ K K+IQDF++EKQEFE  LARFRE+H      
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189

Query: 179 -----------------------------PDLDQKGKKSDICKR---------------- 193
                                        PD   K  K  + K+                
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKA 249

Query: 194 ----------VQTKVQKKVQKNIEEV----RSLPKTDQFFKKVKFHGEPQKPPMNGYHKF 239
                     ++  +QK  + NI E      +L K ++  K  KF G P KPP N Y  +
Sbjct: 250 LEQRKEYEEIMRDYIQKHPELNISEEGITKSTLTKAERQLKD-KFDGRPTKPPPNSYSLY 308

Query: 240 HQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLS 299
             +  ++  ++ +   ERMV   ++W+ + Q +KD Y  + +  +K+Y+VEL  +L++L 
Sbjct: 309 CAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLP 366

Query: 300 PEDYAAY-----------KESTYAKGKNMAMMGGPAPSLKQTDPQSS 335
            E+               K++T    K  A  GG   S K   P S+
Sbjct: 367 EEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSA 413



 Score =  179 bits (453), Expect = 5e-45
 Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 49/364 (13%)

Query: 81  KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEV 137
           K L +  K+     +K    + G+   + PKR ++A   F +E   Q  +  P +   E+
Sbjct: 378 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 437

Query: 138 TKILSKKYKELPEQMKQKH--------IQDFRKEKQEFEEK------------------- 170
           T++L++ + +L E+ K K+         Q  RK   E EE+                   
Sbjct: 438 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 497

Query: 171 ---LARFREEHP-----------DLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTD 216
              LARF+ +             ++++K K   I K  +   QK+ ++ + E+R+ P   
Sbjct: 498 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 555

Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
              KK+KF GEP+KPPMNGY KF Q+  S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 556 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 615

Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 336
           K  AE  QK+YKV LDLW+K+LSP+D AAYKE    K K+M  + GP P   +T  QS S
Sbjct: 616 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 675

Query: 337 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 393
                  ++   E +  +    E   +       S    E+  +DG+E E  +  +    
Sbjct: 676 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 735

Query: 394 EDME 397
           +D E
Sbjct: 736 DDDE 739


>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
          Length = 246

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 43/189 (22%), Positives = 95/189 (50%), Gaps = 21/189 (11%)

Query: 107 PKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQE 166
           PK+ +++Y+RF KE  P +    P  ++ E+ + ++++++ELP+  K+ +   +R E Q 
Sbjct: 50  PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109

Query: 167 FEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFH 225
           ++E+++RF+E+  P      +K  + K ++ K   K                  K++   
Sbjct: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152

Query: 226 GEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 285
           G+P K P + Y+ +  + +  +E +  S +E++  +   W+ +  S+K+ Y   A+  + 
Sbjct: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209

Query: 286 EYKVELDLW 294
            Y  E+  W
Sbjct: 210 RYHNEMKSW 218



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 24/185 (12%)

Query: 230 KPPMNGYHKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 287
           K P++ Y +F ++     + Q+   +  E +  I +RW+ +P S+K  Y+       + Y
Sbjct: 51  KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110

Query: 288 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 338
           K E+  + + L+P    +          K     K K + ++G P        P+S+   
Sbjct: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164

Query: 339 GLQEGFGEGQGLQAAGTEASQTI---WVNCQVSMEPEENRKKDGEEEESSNSLDCSSGED 395
            + E F E +G   +  E  +T+   W N  +S   +E   +  +E+E+    +  S E+
Sbjct: 165 YVAERFQEAKG--DSPQEKLKTVKENWKN--LSDSEKELYIQHAKEDETRYHNEMKSWEE 220

Query: 396 MEVDV 400
             ++V
Sbjct: 221 QMIEV 225


>gi|83715964 high-mobility group 20B [Homo sapiens]
          Length = 317

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 104 PDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKE 163
           P+ PK  +T Y+RF  E   Q    +P +   E+TK+L  ++ +L    KQ+++ +  +E
Sbjct: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126

Query: 164 KQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKT 215
           KQ++ ++L  +++           S+  K    K+Q+K  K  +    L  T
Sbjct: 127 KQQYMKELRAYQQ-----------SEAYKMCTEKIQEKKIKKEDSSSGLMNT 167



 Score = 32.7 bits (73), Expect = 0.60
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 220 KKVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 277
           K+ K      K P+ GY +F  +       +H  L   E    +G  W ++  ++K  Y 
Sbjct: 61  KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 120

Query: 278 SQAELLQKEYKVEL 291
            +AE  +++Y  EL
Sbjct: 121 DEAEREKQQYMKEL 134


>gi|4504425 high-mobility group box 1 [Homo sapiens]
          Length = 215

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 13/171 (7%)

Query: 45  QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-----VLEAKKCVKNTNKSQ 98
           + H D   V F  FS + C  +W  +S   + KF  + K        E K  +    +++
Sbjct: 29  KKHPD-ASVNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK 86

Query: 99  KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
           K    P+ PKR  +A+  F  E  P+    +PG+   +V K L + +       KQ + +
Sbjct: 87  KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEK 146

Query: 159 DFRKEKQEFEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
              K K+++E+ +A +R +  PD  +KG    + K  ++K +K+ +++ E+
Sbjct: 147 KAAKLKEKYEKDIAAYRAKGKPDAAKKG----VVKAEKSKKKKEEEEDEED 193


>gi|169212060 PREDICTED: high mobility group protein B3-like
           protein-like [Homo sapiens]
          Length = 207

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNH-PDFPKR 109
           + F  FS + C  +W  +S   + KF+ L K   +   + +K+   ++ G+   P+ PKR
Sbjct: 36  INFAEFS-KKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94

Query: 110 LLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEE 169
             + +  F  E  P+     PG+   +V K L + +K L +  KQ +I    K K+++E+
Sbjct: 95  PPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154

Query: 170 KLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
            +A ++        KG KSD  K      QKKV++  E+
Sbjct: 155 DVAVYK-------SKG-KSDGAKGPAKVAQKKVEEEDED 185



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 34/176 (19%)

Query: 175 REEHPDLDQK-----GKKSDICKRVQTKVQKKVQKNIEEVRSLPKT--DQFFK------- 220
           REEH   + K      + S  C      + KK +    E+    K   DQ  K       
Sbjct: 24  REEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKG 83

Query: 221 -KVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 277
            K K    P++PP +G+  F  +     +  +  + + +   ++G  W+ +  S+K  Y 
Sbjct: 84  GKKKDPNAPKRPP-SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142

Query: 278 SQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQ 333
           +QA  L+++Y+            +D A YK    +KGK+    G    + K+ + +
Sbjct: 143 TQAAKLKEKYE------------KDVAVYK----SKGKSDGAKGPAKVAQKKVEEE 182


>gi|239745831 PREDICTED: high mobility group protein B3-like
           protein-like [Homo sapiens]
          Length = 207

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNH-PDFPKR 109
           + F  FS + C  +W  +S   + KF+ L K   +   + +K+   ++ G+   P+ PKR
Sbjct: 36  INFAEFS-KKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94

Query: 110 LLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEE 169
             + +  F  E  P+     PG+   +V K L + +K L +  KQ +I    K K+++E+
Sbjct: 95  PPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154

Query: 170 KLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
            +A ++        KG KSD  K      QKKV++  E+
Sbjct: 155 DVAVYK-------SKG-KSDGAKGPAKVAQKKVEEEDED 185



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 34/176 (19%)

Query: 175 REEHPDLDQK-----GKKSDICKRVQTKVQKKVQKNIEEVRSLPKT--DQFFK------- 220
           REEH   + K      + S  C      + KK +    E+    K   DQ  K       
Sbjct: 24  REEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKG 83

Query: 221 -KVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 277
            K K    P++PP +G+  F  +     +  +  + + +   ++G  W+ +  S+K  Y 
Sbjct: 84  GKKKDPNAPKRPP-SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142

Query: 278 SQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQ 333
           +QA  L+++Y+            +D A YK    +KGK+    G    + K+ + +
Sbjct: 143 TQAAKLKEKYE------------KDVAVYK----SKGKSDGAKGPAKVAQKKVEEE 182


>gi|8922633 high-mobility group 20A [Homo sapiens]
          Length = 347

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 96  KSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQK 155
           K +K     + PK  LT Y+RF  E   Q     P +   E+T++L  ++ +LP + KQ+
Sbjct: 92  KRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQR 151

Query: 156 HIQDFRKEKQEFEEKLARFRE--------EHPDLDQKGK--KSDICKRVQTKVQKKVQKN 205
           ++ +  ++K+ + ++L ++++              QKGK  + D  ++     +K+ +  
Sbjct: 152 YLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVK 211

Query: 206 IEEVRSLP-KTDQFFKKVK 223
              V  +P  T++F    K
Sbjct: 212 ERSVFDIPIFTEEFLNHSK 230



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 230 KPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 287
           K P+ GY +F  +       +   +   E    +G  W ++P  +K  Y  +A+  ++ Y
Sbjct: 104 KSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERY 163

Query: 288 KVELDLWLKTLSPEDYAAYKESTYAKGK 315
             EL+ + KT   E Y  +   T  + K
Sbjct: 164 MKELEQYQKT---EAYKVFSRKTQDRQK 188


>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRL 110
           V F  FS + C  +W  +S   + KF  + K   +   + +K   K  K +  P  PKR 
Sbjct: 33  VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91

Query: 111 LTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEK 170
            + +  F  E  P+     PG+   +V K L + +  L +  KQ +I    K K+++E+ 
Sbjct: 92  PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151

Query: 171 LARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
           +A       D   KG K D  KR      KKV++  E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181


>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRL 110
           V F  FS + C  +W  +S   + KF  + K   +   + +K   K  K +  P  PKR 
Sbjct: 33  VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91

Query: 111 LTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEK 170
            + +  F  E  P+     PG+   +V K L + +  L +  KQ +I    K K+++E+ 
Sbjct: 92  PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151

Query: 171 LARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
           +A       D   KG K D  KR      KKV++  E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181


>gi|113416897 PREDICTED: similar to high mobility group box 3
           isoform 1 [Homo sapiens]
          Length = 201

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRL 110
           V F  FS + C  +W  +S   + KF  + K   +   + +K   K  K +  P  PKR 
Sbjct: 33  VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91

Query: 111 LTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEK 170
            + +  F  E  P+     PG+   +V K L + +  L +  KQ +I    K K+++E+ 
Sbjct: 92  PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151

Query: 171 LARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
           +A       D   KG K D  KR      KKV++  E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181


>gi|194688135 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 45  QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 98
           + H D   V F  FS + C  +W  +S   + KF  + K        E K  V      +
Sbjct: 29  KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86

Query: 99  KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
             +  P+ PKR  +A+  F  E+ P+    +PG+   +  K L + + E   + KQ + Q
Sbjct: 87  GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 159 DFRKEKQEFEEKLARFREEHPDLDQKGKK 187
              K K+++E+ +A +R +     + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173


>gi|194688133 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 45  QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 98
           + H D   V F  FS + C  +W  +S   + KF  + K        E K  V      +
Sbjct: 29  KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86

Query: 99  KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
             +  P+ PKR  +A+  F  E+ P+    +PG+   +  K L + + E   + KQ + Q
Sbjct: 87  GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 159 DFRKEKQEFEEKLARFREEHPDLDQKGKK 187
              K K+++E+ +A +R +     + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173


>gi|11321591 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 45  QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 98
           + H D   V F  FS + C  +W  +S   + KF  + K        E K  V      +
Sbjct: 29  KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86

Query: 99  KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
             +  P+ PKR  +A+  F  E+ P+    +PG+   +  K L + + E   + KQ + Q
Sbjct: 87  GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146

Query: 159 DFRKEKQEFEEKLARFREEHPDLDQKGKK 187
              K K+++E+ +A +R +     + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173


>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
          Length = 211

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 45  QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-----VLEAKKCVKNTNKSQ 98
           + H D   V F  FS + C  +W  +S   + KF  + K        + K  +    +++
Sbjct: 29  KKHSD-ASVNFSEFSNK-CSERWKTMSAKEKGKFEDMAKADKTHYERQMKTYIPPKGETK 86

Query: 99  KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
           K    P+ PKR  +A+  F  E  P+    +PG+   +V K L + +       KQ   +
Sbjct: 87  KKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEK 146

Query: 159 DFRKEKQEFEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQ 217
              K K+++E+ +A ++ +  P+  +KG    + K  ++K +K+ +++ E+     + D+
Sbjct: 147 KAAKLKEKYEKDIAAYQAKGKPEAAKKG----VVKAEKSKKKKEEEEDEEDEEDEEEEDE 202



 Score = 37.7 bits (86), Expect = 0.019
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 27/175 (15%)

Query: 150 EQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEEV 209
           E+ K+KH  D      EF  K +  R +     +KGK  D+ K  +T  +++++  I   
Sbjct: 25  EEHKKKH-SDASVNFSEFSNKCSE-RWKTMSAKEKGKFEDMAKADKTHYERQMKTYI--- 79

Query: 210 RSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQR 267
              P   +  KK K    P++PP + +  F  +     + +H  LS+ +   ++G  W  
Sbjct: 80  ---PPKGETKKKFKDPNAPKRPP-SAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNN 135

Query: 268 IPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGG 322
                K   + +A  L+++Y+            +D AAY+    AKGK  A   G
Sbjct: 136 TAADDKQPGEKKAAKLKEKYE------------KDIAAYQ----AKGKPEAAKKG 174


>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 488

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 25/173 (14%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR--------KFSTLKKL-----VLEAKKCVKNTNKSQK 99
           V F  FS + C  +W  +S   +        KF  + K        E K  +    +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 100 GRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQD 159
               P+ PKR  +A+  +F E  P+     PG+   +V K L + +       KQ + + 
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 160 FRKEKQEFEEKLARFREEHPDLDQKGK----KSDICKRVQTKVQKKVQKNIEE 208
             K K+++E+ +A +R        KGK     + + K  ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYR-------AKGKHDAANNGVVKAAKSKKKKEEEENEED 329


>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 487

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 25/173 (14%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR--------KFSTLKKL-----VLEAKKCVKNTNKSQK 99
           V F  FS + C  +W  +S   +        KF  + K        E K  +    +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 100 GRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQD 159
               P+ PKR  +A+  +F E  P+     PG+   +V K L + +       KQ + + 
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 160 FRKEKQEFEEKLARFREEHPDLDQKGK----KSDICKRVQTKVQKKVQKNIEE 208
             K K+++E+ +A +R        KGK     + + K  ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYR-------AKGKHDAANNGVVKAAKSKKKKEEEENEED 329


>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 486

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 25/173 (14%)

Query: 53  VAFKNFSGEMCRLKWLEISCSLR--------KFSTLKKL-----VLEAKKCVKNTNKSQK 99
           V F  FS + C  +W  +S   +        KF  + K        E K  +    +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223

Query: 100 GRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQD 159
               P+ PKR  +A+  +F E  P+     PG+   +V K L + +       KQ + + 
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283

Query: 160 FRKEKQEFEEKLARFREEHPDLDQKGK----KSDICKRVQTKVQKKVQKNIEE 208
             K K+++E+ +A +R        KGK     + + K  ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYR-------AKGKHDAANNGVVKAAKSKKKKEEEENEED 329


>gi|239742753 PREDICTED: similar to high mobility group box 3
           isoform 2 [Homo sapiens]
          Length = 183

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 63  CRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
           C  +W  +S   + KF  + K   +   + +K   K  K +  P  PKR  + +  F  E
Sbjct: 24  CSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSE 83

Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
             P+     PG+   +V K L + +  L +  KQ +I    K K+++E+ +A       D
Sbjct: 84  IRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVA-------D 136

Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEE 208
              KG K D  KR      KKV++  E+
Sbjct: 137 SKSKG-KFDGSKRPAKVAWKKVEEEDED 163


>gi|71143137 high-mobility group box 3 [Homo sapiens]
          Length = 200

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 28/113 (24%), Positives = 55/113 (48%)

Query: 96  KSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQK 155
           K  K +  P+ PKR  + +  F  E  P+     PG+   +V K L + +  L +  KQ 
Sbjct: 82  KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 141

Query: 156 HIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
           +I    K K+++E+ +A ++ +      KG      K+V+ + +++ ++  EE
Sbjct: 142 YITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEE 194


>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
          Length = 621

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 75  RKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRS 134
           R+  + K +V+EA K  K   K +K    P+ P++ ++AY  FF++         P    
Sbjct: 193 RQLPSQKTVVVEAGKKQKAPKKRKK--KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATF 250

Query: 135 QEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFRE 176
            EV+KI++  +  L E+ KQ + +     K+E+ + LA +++
Sbjct: 251 GEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKD 292



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 19/142 (13%)

Query: 193 RVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQH- 251
           R Q   QK V     + +  PK     +K K   EPQKP ++ Y  F +D+ ++ + Q+ 
Sbjct: 192 RRQLPSQKTVVVEAGKKQKAPKK----RKKKDPNEPQKP-VSAYALFFRDTQAAIKGQNP 246

Query: 252 -LSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKEST 310
             +  E    +   W  + + QK  YK + E  +KEY       LK L     AAYK++ 
Sbjct: 247 NATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEY-------LKAL-----AAYKDNQ 294

Query: 311 YAKGKNMAMMGGPAPSLKQTDP 332
             +     +   PAP  +   P
Sbjct: 295 ECQATVETVELDPAPPSQTPSP 316


>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin e1 [Homo sapiens]
          Length = 411

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 18/71 (25%), Positives = 40/71 (56%)

Query: 104 PDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKE 163
           P  P + L  Y+R+ ++ W Q     P ++  E+ KI+   +++L ++ KQ+++ ++  E
Sbjct: 63  PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122

Query: 164 KQEFEEKLARF 174
           K E+ E +  +
Sbjct: 123 KIEYNESMKAY 133


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 16/164 (9%)

Query: 133  RSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICK 192
            R  EV + L +K ++L E  KQ+ + + ++E  E ++K+        +L  K    +  +
Sbjct: 1121 RLAEVEEKLKEKSQQLQE--KQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHME 1178

Query: 193  RVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGY-HKFHQDSWSSKE--- 248
              + ++ +K+ +N EEV+S+ K  +  K+++   E ++  + GY  +       +KE   
Sbjct: 1179 TERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELK 1238

Query: 249  LQHLSLRERMVEIGRRWQRIPQS----------QKDHYKSQAEL 282
            + H+ L+E    I    + + +           +K H K Q E+
Sbjct: 1239 IAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEI 1282



 Score = 32.7 bits (73), Expect = 0.60
 Identities = 14/66 (21%), Positives = 37/66 (56%)

Query: 158 QDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQ 217
           Q+ +++ +E +E+L    +    L+ +       +R +T + +K+Q+ +EEV++L +   
Sbjct: 873 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKD 932

Query: 218 FFKKVK 223
             K+++
Sbjct: 933 DLKQLQ 938



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 52/212 (24%)

Query: 136  EVTKILSKKYKE----LPEQMKQKHIQ------DFRKEKQEFEEKLARFREEH------- 178
            +  ++LSK++KE    L E++ +K IQ      D  K K E ++K+   +++        
Sbjct: 1927 KTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVK 1986

Query: 179  PDLDQKGKKSDICKRVQTKVQ-----------------KKVQKNIEEVRSLPKTDQFFKK 221
             D++   KK +  ++++ + +                 KK+ +++EE+R + K     ++
Sbjct: 1987 EDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRR 2046

Query: 222  VKFHGEPQKP-------PMNGYHKFHQDSWSSKEL-----QHL--SLRERMVEIGRRWQR 267
            +K   + ++         M    + +      K L     QHL  SLRE+   I    +R
Sbjct: 2047 IKESLKMERDQFIATLREMIARDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKR 2106

Query: 268  IPQSQKDHYKSQAEL---LQKEYKVELDLWLK 296
              +   DHY+    L   L+KE + + +L ++
Sbjct: 2107 YSE-MDDHYECLNRLSLDLEKEIEFQKELSMR 2137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,776,368
Number of Sequences: 37866
Number of extensions: 788588
Number of successful extensions: 4120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 3497
Number of HSP's gapped (non-prelim): 793
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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