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Search of human proteins with 239747816
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747816 PREDICTED: upstream binding transcription factor,
RNA polymerase I-like 6 [Homo sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747816 PREDICTED: upstream binding transcription factor, R... 824 0.0
gi|239753269 PREDICTED: upstream binding transcription factor, R... 820 0.0
gi|239741686 PREDICTED: upstream binding transcription factor, R... 820 0.0
gi|239741668 PREDICTED: upstream binding transcription factor, R... 799 0.0
gi|169163306 PREDICTED: upstream binding transcription factor, R... 797 0.0
gi|221136785 upstream binding transcription factor, RNA polymera... 718 0.0
gi|115529449 upstream binding transcription factor, RNA polymera... 282 4e-76
gi|115529451 upstream binding transcription factor, RNA polymera... 282 4e-76
gi|7657671 upstream binding transcription factor, RNA polymerase... 253 2e-67
gi|4507401 transcription factor A, mitochondrial [Homo sapiens] 66 6e-11
gi|83715964 high-mobility group 20B [Homo sapiens] 52 1e-06
gi|4504425 high-mobility group box 1 [Homo sapiens] 50 4e-06
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 49 1e-05
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 49 1e-05
gi|8922633 high-mobility group 20A [Homo sapiens] 49 1e-05
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 48 2e-05
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 48 2e-05
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 48 2e-05
gi|194688135 high-mobility group box 2 [Homo sapiens] 46 5e-05
gi|194688133 high-mobility group box 2 [Homo sapiens] 46 5e-05
gi|11321591 high-mobility group box 2 [Homo sapiens] 46 5e-05
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 46 5e-05
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 46 7e-05
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 46 7e-05
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 46 7e-05
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 46 7e-05
gi|71143137 high-mobility group box 3 [Homo sapiens] 46 7e-05
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 46 7e-05
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re... 45 9e-05
gi|71061468 centromere protein E [Homo sapiens] 44 2e-04
>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 824 bits (2128), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG
Sbjct: 1 MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
Query: 61 EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE
Sbjct: 61 EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD
Sbjct: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240
LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH
Sbjct: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240
Query: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP
Sbjct: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
Query: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT
Sbjct: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
Query: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
>gi|239753269 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 820 bits (2117), Expect = 0.0
Identities = 398/400 (99%), Positives = 399/400 (99%)
Query: 1 MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG
Sbjct: 1 MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
Query: 61 EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE
Sbjct: 61 EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD
Sbjct: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240
LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGY KFH
Sbjct: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFH 240
Query: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP
Sbjct: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
Query: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT
Sbjct: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
Query: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
IWVNCQVSMEPE+NRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 361 IWVNCQVSMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400
>gi|239741686 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 820 bits (2117), Expect = 0.0
Identities = 398/400 (99%), Positives = 399/400 (99%)
Query: 1 MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG
Sbjct: 1 MPAKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSG 60
Query: 61 EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE
Sbjct: 61 EMCRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD
Sbjct: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFH 240
LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGY KFH
Sbjct: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYQKFH 240
Query: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP
Sbjct: 241 QDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSP 300
Query: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT
Sbjct: 301 EDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQT 360
Query: 361 IWVNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
IWVNCQVSMEPE+NRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 361 IWVNCQVSMEPEDNRKKDGEEEESSNSLDCSSGEDMEVDV 400
>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 3 [Homo sapiens]
Length = 457
Score = 799 bits (2063), Expect = 0.0
Identities = 388/398 (97%), Positives = 393/398 (98%)
Query: 3 AKDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEM 62
AKDIK+ALPRSQGHWSNADILRLLECMENNLP DDNGTFSSTQSHMDWGKVAFKNFSGEM
Sbjct: 60 AKDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEM 119
Query: 63 CRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENW 122
CRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR LTAYIRFFKENW
Sbjct: 120 CRLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENW 179
Query: 123 PQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLD 182
PQYSQMYPGMRSQE+TKILSKKYKELPEQMKQK+IQDF+KEKQEFEEKL RFREEHPDLD
Sbjct: 180 PQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLD 239
Query: 183 QKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD 242
QKGKKSDI KR+QTKVQKKVQKNIEEV SLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD
Sbjct: 240 QKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQD 299
Query: 243 SWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPED 302
SWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPED
Sbjct: 300 SWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPED 359
Query: 303 YAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIW 362
YAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIW
Sbjct: 360 YAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIW 419
Query: 363 VNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
VNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 420 VNCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 457
>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 5 [Homo sapiens]
Length = 471
Score = 797 bits (2059), Expect = 0.0
Identities = 387/397 (97%), Positives = 392/397 (98%)
Query: 4 KDIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMC 63
KDIK+ALPRSQGHWSNADILRLLECMENNLP DDNGTFSSTQSHMDWGKVAFKNFSGEMC
Sbjct: 75 KDIKMALPRSQGHWSNADILRLLECMENNLPSDDNGTFSSTQSHMDWGKVAFKNFSGEMC 134
Query: 64 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWP 123
RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKR LTAYIRFFKENWP
Sbjct: 135 RLKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWP 194
Query: 124 QYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQ 183
QYSQMYPGMRSQE+TKILSKKYKELPEQMKQK+IQDF+KEKQEFEEKL RFREEHPDLDQ
Sbjct: 195 QYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQEFEEKLVRFREEHPDLDQ 254
Query: 184 KGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 243
KGKKSDI KR+QTKVQKKVQKNIEEV SLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS
Sbjct: 255 KGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDS 314
Query: 244 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 303
WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY
Sbjct: 315 WSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDY 374
Query: 304 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 363
AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV
Sbjct: 375 AAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWV 434
Query: 364 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV
Sbjct: 435 NCQVSMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 471
>gi|221136785 upstream binding transcription factor, RNA polymerase
I-like 1 [Homo sapiens]
Length = 393
Score = 718 bits (1853), Expect = 0.0
Identities = 347/393 (88%), Positives = 367/393 (93%)
Query: 8 VALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCRLKW 67
+ALPRSQGHWSN DILRLLECMENN P DDN TFSSTQSHMDWGKVAFKNFSGEMCRLKW
Sbjct: 1 MALPRSQGHWSNKDILRLLECMENNRPSDDNSTFSSTQSHMDWGKVAFKNFSGEMCRLKW 60
Query: 68 LEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQ 127
LEISC+LRKF TLK+LVLEAKKCVK NKSQK RN PDFPKR LTAY RFFKE+WPQYSQ
Sbjct: 61 LEISCNLRKFGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQ 120
Query: 128 MYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKK 187
MYPGMRSQE+TKILSKKY+ELPEQMKQK+IQDFRKEKQEFEEKLARFREEHPDL QK KK
Sbjct: 121 MYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREEHPDLVQKAKK 180
Query: 188 SDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 247
S + KR Q KVQKK QKNIEEVRSLPKTD+FFKKVKFHGEPQKPPMNGYHKFHQDSWSSK
Sbjct: 181 SSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSK 240
Query: 248 ELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYK 307
E+QHLS+RERMVEIGRRWQRIPQSQKDH+KSQAE LQK+YKV+LDLWLKTLSPE+YAAYK
Sbjct: 241 EMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYK 300
Query: 308 ESTYAKGKNMAMMGGPAPSLKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQV 367
ESTYAKGKNMAM GGP P LKQ DPQSSSAKGLQEGFGEGQGLQAAGT++SQTIWVNC V
Sbjct: 301 ESTYAKGKNMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHV 360
Query: 368 SMEPEENRKKDGEEEESSNSLDCSSGEDMEVDV 400
SMEPEENRKKD E+EESSNS DCSSGE++EVDV
Sbjct: 361 SMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 282 bits (721), Expect = 4e-76
Identities = 156/370 (42%), Positives = 224/370 (60%), Gaps = 42/370 (11%)
Query: 5 DIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 64
D+++A P+ Q WS D+L LLECM+NNLP +D+ F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10 DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69
Query: 65 LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQ 124
LKW+EIS +RKF TL +L+L+A++ VKN K +K + HPDFPK+ LT Y RFF E +
Sbjct: 70 LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129
Query: 125 YSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQK 184
Y++++P M + ++TKILSKKYKELPE+ K K+IQDF++EKQEFE LARFRE+HPDL Q
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189
Query: 185 GKKSDICKRVQTK------------------------VQKKVQKNIEE----VRSLPKTD 216
KKSDI ++ +T +QK + NI E +L K +
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAE 249
Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
+ K KF G P KPP N Y + + ++ ++ + ERMV ++W+ + Q +KD Y
Sbjct: 250 RQLKD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAY 306
Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAY-----------KESTYAKGKNMAMMGGPAP 325
+ + +K+Y+VEL +L++L E+ K++T K A GG
Sbjct: 307 HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGG 366
Query: 326 SLKQTDPQSS 335
S K P S+
Sbjct: 367 SEKPKRPVSA 376
Score = 179 bits (453), Expect = 5e-45
Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 49/364 (13%)
Query: 81 KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEV 137
K L + K+ +K + G+ + PKR ++A F +E Q + P + E+
Sbjct: 341 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 400
Query: 138 TKILSKKYKELPEQMKQKH--------IQDFRKEKQEFEEK------------------- 170
T++L++ + +L E+ K K+ Q RK E EE+
Sbjct: 401 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 460
Query: 171 ---LARFREEHP-----------DLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTD 216
LARF+ + ++++K K I K + QK+ ++ + E+R+ P
Sbjct: 461 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 518
Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
KK+KF GEP+KPPMNGY KF Q+ S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 519 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 578
Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 336
K AE QK+YKV LDLW+K+LSP+D AAYKE K K+M + GP P +T QS S
Sbjct: 579 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 638
Query: 337 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 393
++ E + + E + S E+ +DG+E E + +
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Query: 394 EDME 397
+D E
Sbjct: 699 DDDE 702
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 282 bits (721), Expect = 4e-76
Identities = 156/370 (42%), Positives = 224/370 (60%), Gaps = 42/370 (11%)
Query: 5 DIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 64
D+++A P+ Q WS D+L LLECM+NNLP +D+ F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10 DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69
Query: 65 LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQ 124
LKW+EIS +RKF TL +L+L+A++ VKN K +K + HPDFPK+ LT Y RFF E +
Sbjct: 70 LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129
Query: 125 YSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQK 184
Y++++P M + ++TKILSKKYKELPE+ K K+IQDF++EKQEFE LARFRE+HPDL Q
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189
Query: 185 GKKSDICKRVQTK------------------------VQKKVQKNIEE----VRSLPKTD 216
KKSDI ++ +T +QK + NI E +L K +
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAE 249
Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
+ K KF G P KPP N Y + + ++ ++ + ERMV ++W+ + Q +KD Y
Sbjct: 250 RQLKD-KFDGRPTKPPPNSYSLYCAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAY 306
Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAY-----------KESTYAKGKNMAMMGGPAP 325
+ + +K+Y+VEL +L++L E+ K++T K A GG
Sbjct: 307 HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGG 366
Query: 326 SLKQTDPQSS 335
S K P S+
Sbjct: 367 SEKPKRPVSA 376
Score = 179 bits (453), Expect = 5e-45
Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 49/364 (13%)
Query: 81 KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEV 137
K L + K+ +K + G+ + PKR ++A F +E Q + P + E+
Sbjct: 341 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 400
Query: 138 TKILSKKYKELPEQMKQKH--------IQDFRKEKQEFEEK------------------- 170
T++L++ + +L E+ K K+ Q RK E EE+
Sbjct: 401 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 460
Query: 171 ---LARFREEHP-----------DLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTD 216
LARF+ + ++++K K I K + QK+ ++ + E+R+ P
Sbjct: 461 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 518
Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
KK+KF GEP+KPPMNGY KF Q+ S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 519 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 578
Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 336
K AE QK+YKV LDLW+K+LSP+D AAYKE K K+M + GP P +T QS S
Sbjct: 579 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 638
Query: 337 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 393
++ E + + E + S E+ +DG+E E + +
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Query: 394 EDME 397
+D E
Sbjct: 699 DDDE 702
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 253 bits (647), Expect = 2e-67
Identities = 151/407 (37%), Positives = 220/407 (54%), Gaps = 79/407 (19%)
Query: 5 DIKVALPRSQGHWSNADILRLLECMENNLPYDDNGTFSSTQSHMDWGKVAFKNFSGEMCR 64
D+++A P+ Q WS D+L LLECM+NNLP +D+ F +T+SHMDW KVAFK+FSG+MC+
Sbjct: 10 DLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCK 69
Query: 65 LKWLEISCSLRKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQ 124
LKW+EIS +RKF TL +L+L+A++ VKN K +K + HPDFPK+ LT Y RFF E +
Sbjct: 70 LKWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAK 129
Query: 125 YSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEH------ 178
Y++++P M + ++TKILSKKYKELPE+ K K+IQDF++EKQEFE LARFRE+H
Sbjct: 130 YAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 189
Query: 179 -----------------------------PDLDQKGKKSDICKR---------------- 193
PD K K + K+
Sbjct: 190 AKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKA 249
Query: 194 ----------VQTKVQKKVQKNIEEV----RSLPKTDQFFKKVKFHGEPQKPPMNGYHKF 239
++ +QK + NI E +L K ++ K KF G P KPP N Y +
Sbjct: 250 LEQRKEYEEIMRDYIQKHPELNISEEGITKSTLTKAERQLKD-KFDGRPTKPPPNSYSLY 308
Query: 240 HQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLS 299
+ ++ ++ + ERMV ++W+ + Q +KD Y + + +K+Y+VEL +L++L
Sbjct: 309 CAELMAN--MKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLP 366
Query: 300 PEDYAAY-----------KESTYAKGKNMAMMGGPAPSLKQTDPQSS 335
E+ K++T K A GG S K P S+
Sbjct: 367 EEEQQRVLGEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSA 413
Score = 179 bits (453), Expect = 5e-45
Identities = 122/364 (33%), Positives = 180/364 (49%), Gaps = 49/364 (13%)
Query: 81 KKLVLEAKKCVKNTNKS---QKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEV 137
K L + K+ +K + G+ + PKR ++A F +E Q + P + E+
Sbjct: 378 KMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 437
Query: 138 TKILSKKYKELPEQMKQKH--------IQDFRKEKQEFEEK------------------- 170
T++L++ + +L E+ K K+ Q RK E EE+
Sbjct: 438 TRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVI 497
Query: 171 ---LARFREEHP-----------DLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTD 216
LARF+ + ++++K K I K + QK+ ++ + E+R+ P
Sbjct: 498 GDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAED--QKRYERELSEMRAPPAAT 555
Query: 217 QFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHY 276
KK+KF GEP+KPPMNGY KF Q+ S+ EL HL L+ERMVEIG RWQRI QSQK+HY
Sbjct: 556 NSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHY 615
Query: 277 KSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQSSS 336
K AE QK+YKV LDLW+K+LSP+D AAYKE K K+M + GP P +T QS S
Sbjct: 616 KKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKS 675
Query: 337 AK---GLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKDGEEEESSNSLDCSSG 393
++ E + + E + S E+ +DG+E E + +
Sbjct: 676 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 735
Query: 394 EDME 397
+D E
Sbjct: 736 DDDE 739
>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
Length = 246
Score = 65.9 bits (159), Expect = 6e-11
Identities = 43/189 (22%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 107 PKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQE 166
PK+ +++Y+RF KE P + P ++ E+ + ++++++ELP+ K+ + +R E Q
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
Query: 167 FEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFH 225
++E+++RF+E+ P +K + K ++ K K K++
Sbjct: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152
Query: 226 GEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 285
G+P K P + Y+ + + + +E + S +E++ + W+ + S+K+ Y A+ +
Sbjct: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
Query: 286 EYKVELDLW 294
Y E+ W
Sbjct: 210 RYHNEMKSW 218
Score = 38.1 bits (87), Expect = 0.014
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 230 KPPMNGYHKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 287
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K Y+ + Y
Sbjct: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
Query: 288 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 338
K E+ + + L+P + K K K + ++G P P+S+
Sbjct: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164
Query: 339 GLQEGFGEGQGLQAAGTEASQTI---WVNCQVSMEPEENRKKDGEEEESSNSLDCSSGED 395
+ E F E +G + E +T+ W N +S +E + +E+E+ + S E+
Sbjct: 165 YVAERFQEAKG--DSPQEKLKTVKENWKN--LSDSEKELYIQHAKEDETRYHNEMKSWEE 220
Query: 396 MEVDV 400
++V
Sbjct: 221 QMIEV 225
>gi|83715964 high-mobility group 20B [Homo sapiens]
Length = 317
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 104 PDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKE 163
P+ PK +T Y+RF E Q +P + E+TK+L ++ +L KQ+++ + +E
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 164 KQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKT 215
KQ++ ++L +++ S+ K K+Q+K K + L T
Sbjct: 127 KQQYMKELRAYQQ-----------SEAYKMCTEKIQEKKIKKEDSSSGLMNT 167
Score = 32.7 bits (73), Expect = 0.60
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 220 KKVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 277
K+ K K P+ GY +F + +H L E +G W ++ ++K Y
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 120
Query: 278 SQAELLQKEYKVEL 291
+AE +++Y EL
Sbjct: 121 DEAEREKQQYMKEL 134
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 45 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-----VLEAKKCVKNTNKSQ 98
+ H D V F FS + C +W +S + KF + K E K + +++
Sbjct: 29 KKHPD-ASVNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETK 86
Query: 99 KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
K P+ PKR +A+ F E P+ +PG+ +V K L + + KQ + +
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEK 146
Query: 159 DFRKEKQEFEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
K K+++E+ +A +R + PD +KG + K ++K +K+ +++ E+
Sbjct: 147 KAAKLKEKYEKDIAAYRAKGKPDAAKKG----VVKAEKSKKKKEEEEDEED 193
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 48.5 bits (114), Expect = 1e-05
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNH-PDFPKR 109
+ F FS + C +W +S + KF+ L K + + +K+ ++ G+ P+ PKR
Sbjct: 36 INFAEFS-KKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
Query: 110 LLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEE 169
+ + F E P+ PG+ +V K L + +K L + KQ +I K K+++E+
Sbjct: 95 PPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154
Query: 170 KLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
+A ++ KG KSD K QKKV++ E+
Sbjct: 155 DVAVYK-------SKG-KSDGAKGPAKVAQKKVEEEDED 185
Score = 32.0 bits (71), Expect = 1.0
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 34/176 (19%)
Query: 175 REEHPDLDQK-----GKKSDICKRVQTKVQKKVQKNIEEVRSLPKT--DQFFK------- 220
REEH + K + S C + KK + E+ K DQ K
Sbjct: 24 REEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKG 83
Query: 221 -KVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 277
K K P++PP +G+ F + + + + + + ++G W+ + S+K Y
Sbjct: 84 GKKKDPNAPKRPP-SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 278 SQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQ 333
+QA L+++Y+ +D A YK +KGK+ G + K+ + +
Sbjct: 143 TQAAKLKEKYE------------KDVAVYK----SKGKSDGAKGPAKVAQKKVEEE 182
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 48.5 bits (114), Expect = 1e-05
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNH-PDFPKR 109
+ F FS + C +W +S + KF+ L K + + +K+ ++ G+ P+ PKR
Sbjct: 36 INFAEFS-KKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
Query: 110 LLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEE 169
+ + F E P+ PG+ +V K L + +K L + KQ +I K K+++E+
Sbjct: 95 PPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154
Query: 170 KLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
+A ++ KG KSD K QKKV++ E+
Sbjct: 155 DVAVYK-------SKG-KSDGAKGPAKVAQKKVEEEDED 185
Score = 32.0 bits (71), Expect = 1.0
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 34/176 (19%)
Query: 175 REEHPDLDQK-----GKKSDICKRVQTKVQKKVQKNIEEVRSLPKT--DQFFK------- 220
REEH + K + S C + KK + E+ K DQ K
Sbjct: 24 REEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYGPAKG 83
Query: 221 -KVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYK 277
K K P++PP +G+ F + + + + + + ++G W+ + S+K Y
Sbjct: 84 GKKKDPNAPKRPP-SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 278 SQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGGPAPSLKQTDPQ 333
+QA L+++Y+ +D A YK +KGK+ G + K+ + +
Sbjct: 143 TQAAKLKEKYE------------KDVAVYK----SKGKSDGAKGPAKVAQKKVEEE 182
>gi|8922633 high-mobility group 20A [Homo sapiens]
Length = 347
Score = 48.5 bits (114), Expect = 1e-05
Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 96 KSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQK 155
K +K + PK LT Y+RF E Q P + E+T++L ++ +LP + KQ+
Sbjct: 92 KRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQR 151
Query: 156 HIQDFRKEKQEFEEKLARFRE--------EHPDLDQKGK--KSDICKRVQTKVQKKVQKN 205
++ + ++K+ + ++L ++++ QKGK + D ++ +K+ +
Sbjct: 152 YLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVK 211
Query: 206 IEEVRSLP-KTDQFFKKVK 223
V +P T++F K
Sbjct: 212 ERSVFDIPIFTEEFLNHSK 230
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 230 KPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 287
K P+ GY +F + + + E +G W ++P +K Y +A+ ++ Y
Sbjct: 104 KSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERY 163
Query: 288 KVELDLWLKTLSPEDYAAYKESTYAKGK 315
EL+ + KT E Y + T + K
Sbjct: 164 MKELEQYQKT---EAYKVFSRKTQDRQK 188
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRL 110
V F FS + C +W +S + KF + K + + +K K K + P PKR
Sbjct: 33 VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91
Query: 111 LTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEK 170
+ + F E P+ PG+ +V K L + + L + KQ +I K K+++E+
Sbjct: 92 PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151
Query: 171 LARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
+A D KG K D KR KKV++ E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRL 110
V F FS + C +W +S + KF + K + + +K K K + P PKR
Sbjct: 33 VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91
Query: 111 LTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEK 170
+ + F E P+ PG+ +V K L + + L + KQ +I K K+++E+
Sbjct: 92 PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151
Query: 171 LARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
+A D KG K D KR KKV++ E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRL 110
V F FS + C +W +S + KF + K + + +K K K + P PKR
Sbjct: 33 VNFAEFS-KKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRP 91
Query: 111 LTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEK 170
+ + F E P+ PG+ +V K L + + L + KQ +I K K+++E+
Sbjct: 92 PSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKD 151
Query: 171 LARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
+A D KG K D KR KKV++ E+
Sbjct: 152 VA-------DSKSKG-KFDGSKRPAKVAWKKVEEEDED 181
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 46.2 bits (108), Expect = 5e-05
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 45 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 98
+ H D V F FS + C +W +S + KF + K E K V +
Sbjct: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
Query: 99 KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
+ P+ PKR +A+ F E+ P+ +PG+ + K L + + E + KQ + Q
Sbjct: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
Query: 159 DFRKEKQEFEEKLARFREEHPDLDQKGKK 187
K K+++E+ +A +R + + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 46.2 bits (108), Expect = 5e-05
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 45 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 98
+ H D V F FS + C +W +S + KF + K E K V +
Sbjct: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
Query: 99 KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
+ P+ PKR +A+ F E+ P+ +PG+ + K L + + E + KQ + Q
Sbjct: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
Query: 159 DFRKEKQEFEEKLARFREEHPDLDQKGKK 187
K K+++E+ +A +R + + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 46.2 bits (108), Expect = 5e-05
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 45 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKK-----LVLEAKKCVKNTNKSQ 98
+ H D V F FS + C +W +S + KF + K E K V +
Sbjct: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
Query: 99 KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
+ P+ PKR +A+ F E+ P+ +PG+ + K L + + E + KQ + Q
Sbjct: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
Query: 159 DFRKEKQEFEEKLARFREEHPDLDQKGKK 187
K K+++E+ +A +R + + GKK
Sbjct: 147 KAAKLKEKYEKDIAAYRAK--GKSEAGKK 173
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 46.2 bits (108), Expect = 5e-05
Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 45 QSHMDWGKVAFKNFSGEMCRLKWLEISCSLR-KFSTLKKL-----VLEAKKCVKNTNKSQ 98
+ H D V F FS + C +W +S + KF + K + K + +++
Sbjct: 29 KKHSD-ASVNFSEFSNK-CSERWKTMSAKEKGKFEDMAKADKTHYERQMKTYIPPKGETK 86
Query: 99 KGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQ 158
K P+ PKR +A+ F E P+ +PG+ +V K L + + KQ +
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEK 146
Query: 159 DFRKEKQEFEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQ 217
K K+++E+ +A ++ + P+ +KG + K ++K +K+ +++ E+ + D+
Sbjct: 147 KAAKLKEKYEKDIAAYQAKGKPEAAKKG----VVKAEKSKKKKEEEEDEEDEEDEEEEDE 202
Score = 37.7 bits (86), Expect = 0.019
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 150 EQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEEV 209
E+ K+KH D EF K + R + +KGK D+ K +T +++++ I
Sbjct: 25 EEHKKKH-SDASVNFSEFSNKCSE-RWKTMSAKEKGKFEDMAKADKTHYERQMKTYI--- 79
Query: 210 RSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQH--LSLRERMVEIGRRWQR 267
P + KK K P++PP + + F + + +H LS+ + ++G W
Sbjct: 80 ---PPKGETKKKFKDPNAPKRPP-SAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNN 135
Query: 268 IPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTYAKGKNMAMMGG 322
K + +A L+++Y+ +D AAY+ AKGK A G
Sbjct: 136 TAADDKQPGEKKAAKLKEKYE------------KDIAAYQ----AKGKPEAAKKG 174
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 45.8 bits (107), Expect = 7e-05
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR--------KFSTLKKL-----VLEAKKCVKNTNKSQK 99
V F FS + C +W +S + KF + K E K + +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 100 GRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQD 159
P+ PKR +A+ +F E P+ PG+ +V K L + + KQ + +
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 160 FRKEKQEFEEKLARFREEHPDLDQKGK----KSDICKRVQTKVQKKVQKNIEE 208
K K+++E+ +A +R KGK + + K ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYR-------AKGKHDAANNGVVKAAKSKKKKEEEENEED 329
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 45.8 bits (107), Expect = 7e-05
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR--------KFSTLKKL-----VLEAKKCVKNTNKSQK 99
V F FS + C +W +S + KF + K E K + +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 100 GRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQD 159
P+ PKR +A+ +F E P+ PG+ +V K L + + KQ + +
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 160 FRKEKQEFEEKLARFREEHPDLDQKGK----KSDICKRVQTKVQKKVQKNIEE 208
K K+++E+ +A +R KGK + + K ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYR-------AKGKHDAANNGVVKAAKSKKKKEEEENEED 329
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 45.8 bits (107), Expect = 7e-05
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 53 VAFKNFSGEMCRLKWLEISCSLR--------KFSTLKKL-----VLEAKKCVKNTNKSQK 99
V F FS + C +W +S + KF + K E K + +++K
Sbjct: 165 VNFSEFS-KKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 100 GRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQD 159
P+ PKR +A+ +F E P+ PG+ +V K L + + KQ + +
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 160 FRKEKQEFEEKLARFREEHPDLDQKGK----KSDICKRVQTKVQKKVQKNIEE 208
K K+++E+ +A +R KGK + + K ++K +K+ ++N E+
Sbjct: 284 SAKLKEKYEKDIAAYR-------AKGKHDAANNGVVKAAKSKKKKEEEENEED 329
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 45.8 bits (107), Expect = 7e-05
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 63 CRLKWLEISCSLR-KFSTLKKL-VLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKE 120
C +W +S + KF + K + + +K K K + P PKR + + F E
Sbjct: 24 CSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSE 83
Query: 121 NWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPD 180
P+ PG+ +V K L + + L + KQ +I K K+++E+ +A D
Sbjct: 84 IRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVA-------D 136
Query: 181 LDQKGKKSDICKRVQTKVQKKVQKNIEE 208
KG K D KR KKV++ E+
Sbjct: 137 SKSKG-KFDGSKRPAKVAWKKVEEEDED 163
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 45.8 bits (107), Expect = 7e-05
Identities = 28/113 (24%), Positives = 55/113 (48%)
Query: 96 KSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQK 155
K K + P+ PKR + + F E P+ PG+ +V K L + + L + KQ
Sbjct: 82 KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 141
Query: 156 HIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEE 208
+I K K+++E+ +A ++ + KG K+V+ + +++ ++ EE
Sbjct: 142 YITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEE 194
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 45.8 bits (107), Expect = 7e-05
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 75 RKFSTLKKLVLEAKKCVKNTNKSQKGRNHPDFPKRLLTAYIRFFKENWPQYSQMYPGMRS 134
R+ + K +V+EA K K K +K P+ P++ ++AY FF++ P
Sbjct: 193 RQLPSQKTVVVEAGKKQKAPKKRKK--KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATF 250
Query: 135 QEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFRE 176
EV+KI++ + L E+ KQ + + K+E+ + LA +++
Sbjct: 251 GEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKD 292
Score = 38.1 bits (87), Expect = 0.014
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 193 RVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQH- 251
R Q QK V + + PK +K K EPQKP ++ Y F +D+ ++ + Q+
Sbjct: 192 RRQLPSQKTVVVEAGKKQKAPKK----RKKKDPNEPQKP-VSAYALFFRDTQAAIKGQNP 246
Query: 252 -LSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKEST 310
+ E + W + + QK YK + E +KEY LK L AAYK++
Sbjct: 247 NATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEY-------LKAL-----AAYKDNQ 294
Query: 311 YAKGKNMAMMGGPAPSLKQTDP 332
+ + PAP + P
Sbjct: 295 ECQATVETVELDPAPPSQTPSP 316
>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin e1 [Homo sapiens]
Length = 411
Score = 45.4 bits (106), Expect = 9e-05
Identities = 18/71 (25%), Positives = 40/71 (56%)
Query: 104 PDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKE 163
P P + L Y+R+ ++ W Q P ++ E+ KI+ +++L ++ KQ+++ ++ E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 164 KQEFEEKLARF 174
K E+ E + +
Sbjct: 123 KIEYNESMKAY 133
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 133 RSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICK 192
R EV + L +K ++L E KQ+ + + ++E E ++K+ +L K + +
Sbjct: 1121 RLAEVEEKLKEKSQQLQE--KQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHME 1178
Query: 193 RVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFHGEPQKPPMNGY-HKFHQDSWSSKE--- 248
+ ++ +K+ +N EEV+S+ K + K+++ E ++ + GY + +KE
Sbjct: 1179 TERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELK 1238
Query: 249 LQHLSLRERMVEIGRRWQRIPQS----------QKDHYKSQAEL 282
+ H+ L+E I + + + +K H K Q E+
Sbjct: 1239 IAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEI 1282
Score = 32.7 bits (73), Expect = 0.60
Identities = 14/66 (21%), Positives = 37/66 (56%)
Query: 158 QDFRKEKQEFEEKLARFREEHPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQ 217
Q+ +++ +E +E+L + L+ + +R +T + +K+Q+ +EEV++L +
Sbjct: 873 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKD 932
Query: 218 FFKKVK 223
K+++
Sbjct: 933 DLKQLQ 938
Score = 29.6 bits (65), Expect = 5.0
Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 52/212 (24%)
Query: 136 EVTKILSKKYKE----LPEQMKQKHIQ------DFRKEKQEFEEKLARFREEH------- 178
+ ++LSK++KE L E++ +K IQ D K K E ++K+ +++
Sbjct: 1927 KTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVK 1986
Query: 179 PDLDQKGKKSDICKRVQTKVQ-----------------KKVQKNIEEVRSLPKTDQFFKK 221
D++ KK + ++++ + + KK+ +++EE+R + K ++
Sbjct: 1987 EDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRR 2046
Query: 222 VKFHGEPQKP-------PMNGYHKFHQDSWSSKEL-----QHL--SLRERMVEIGRRWQR 267
+K + ++ M + + K L QHL SLRE+ I +R
Sbjct: 2047 IKESLKMERDQFIATLREMIARDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKR 2106
Query: 268 IPQSQKDHYKSQAEL---LQKEYKVELDLWLK 296
+ DHY+ L L+KE + + +L ++
Sbjct: 2107 YSE-MDDHYECLNRLSLDLEKEIEFQKELSMR 2137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,776,368
Number of Sequences: 37866
Number of extensions: 788588
Number of successful extensions: 4120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 3497
Number of HSP's gapped (non-prelim): 793
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.