Guide to the Human Genome
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Search of human proteins with 239747766

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747766 PREDICTED: hypothetical protein [Homo sapiens]
         (331 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753192 PREDICTED: hypothetical protein [Homo sapiens]           680   0.0  
gi|239747766 PREDICTED: hypothetical protein [Homo sapiens]           680   0.0  
gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo ...   545   e-155
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]       36   0.054
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]            33   0.27 
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            33   0.27 
gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isof...    33   0.46 
gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isof...    33   0.46 
gi|30795231 brain abundant, membrane attached signal protein 1 [...    32   0.60 
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]            32   1.0  
gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]    32   1.0  
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa...    31   1.7  
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]            31   1.7  
gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo sa...    31   1.7  
gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo sa...    31   1.7  
gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo sa...    31   1.7  
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          30   2.3  
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]               30   2.3  
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]               30   2.3  
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]               30   2.3  
gi|239753034 PREDICTED: hypothetical protein [Homo sapiens]            30   3.0  
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]            30   3.0  
gi|239747584 PREDICTED: hypothetical protein [Homo sapiens]            30   3.0  
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]            30   3.0  
gi|239741451 PREDICTED: hypothetical protein [Homo sapiens]            30   3.0  
gi|55750053 atrophin-1 [Homo sapiens]                                  30   3.9  
gi|55750041 atrophin-1 [Homo sapiens]                                  30   3.9  
gi|14249622 ajuba isoform 1 [Homo sapiens]                             30   3.9  
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             30   3.9  
gi|168229161 coronin 7 [Homo sapiens]                                  30   3.9  

>gi|239753192 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score =  680 bits (1755), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60
           MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG
Sbjct: 1   MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60

Query: 61  QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120
           QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA
Sbjct: 61  QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120

Query: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180
           PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG
Sbjct: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180

Query: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240
           PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG
Sbjct: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240

Query: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
           GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR
Sbjct: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300

Query: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331
           AGESFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331


>gi|239747766 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score =  680 bits (1755), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60
           MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG
Sbjct: 1   MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60

Query: 61  QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120
           QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA
Sbjct: 61  QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120

Query: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180
           PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG
Sbjct: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180

Query: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240
           PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG
Sbjct: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240

Query: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
           GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR
Sbjct: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300

Query: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331
           AGESFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331


>gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo
           sapiens]
          Length = 494

 Score =  545 bits (1405), Expect = e-155
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 64  FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 123
           FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH
Sbjct: 227 FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 286

Query: 124 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 183
           HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI
Sbjct: 287 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 346

Query: 184 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 243
           WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD
Sbjct: 347 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 406

Query: 244 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 303
           GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE
Sbjct: 407 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 466

Query: 304 SFTKIPPHALAGGRRALPRELSFQNKVC 331
           SFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 467 SFTKIPPHALAGGRRALPRELSFQNKVC 494


>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
          Length = 5765

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 37/126 (29%), Positives = 46/126 (36%), Gaps = 8/126 (6%)

Query: 4    WASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSG-HTASTRHGQD 62
            W S T TTP TS   V+ +   G    P V             A P S   T+ T     
Sbjct: 3893 WISTT-TTPTTSGSTVTPSSVPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLI 3951

Query: 63   KFADLVRAAVGTASASATV----FQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPR 118
              A  + A   T + S+T       P    T+TTP    ST++  S LG T  H  P P 
Sbjct: 3952 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTT--HTPPVPN 4009

Query: 119  EAPYHH 124
                 H
Sbjct: 4010 TTATTH 4015



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 4    WASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSG-HTASTRHGQD 62
            W S T TTP T    V+ +   G    P V             A P S   T+ T     
Sbjct: 2636 WISTT-TTPTTRGSTVTPSSIPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLT 2694

Query: 63   KFADLVRAAVGTASASATV----FQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPR 118
              A  + A   T + S+T       P    T+TTP    ST++  S LG T  H  P P 
Sbjct: 2695 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTT--HTPPVPN 2752

Query: 119  EAPYHH 124
                 H
Sbjct: 2753 TTATTH 2758



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 35/134 (26%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 4    WASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSG-HTASTRHGQD 62
            W S T TTP T    V+ +   G      V             A P S   T+ T     
Sbjct: 3336 WISTT-TTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPSLT 3394

Query: 63   KFADLVRAAVGTASASATV----FQPPAGLTSTTPFPFLSTISTPSELGLT--------- 109
              A  + A   T + S+T       P    T+TTP    ST++  S LG T         
Sbjct: 3395 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTT 3454

Query: 110  -PSHGEPRPREAPY 122
              +HG   P  +P+
Sbjct: 3455 ATTHGRSLPPSSPH 3468


>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 348

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 24/125 (19%)

Query: 178 LLGPRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGR 237
           L+ PR+  RTP    R+G+            LP+  R   R ++ SG        +F G 
Sbjct: 135 LVAPRVLPRTPQRWTRRGV---------GGRLPQAARSSPRGSKLSGAASPT--AIFPGT 183

Query: 238 ENGGRDGACSIEVLPRTSGRTHPA-PAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSS 296
              GR G C+      +  R   A P PC R A      +  P            KLP++
Sbjct: 184 RGSGRGGGCNCGGGSCSCCRWSMAGPFPCARRATCLASLSPPP------------KLPTA 231

Query: 297 PPPRA 301
           P PRA
Sbjct: 232 PGPRA 236


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 237 RENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAG--GPGFKG 283
           RE G  +GA     L   + R  PAP P     AS  RAAG  GPGF G
Sbjct: 221 REPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269


>gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isoform
           2 [Homo sapiens]
          Length = 798

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 252 PRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPP- 310
           P  S R+ P PAPCL+     LR +     K + +  F R L  S    A   F +  P 
Sbjct: 13  PLQSARSLPGPAPCLKHFPLDLRTSMDGKCKEIAEELFTRSLAESELRSAPYEFPEESPI 72

Query: 311 HALAGGRRALPRELS 325
             L   R+ L R++S
Sbjct: 73  EQLEERRQRLERQIS 87


>gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isoform
           1 [Homo sapiens]
          Length = 879

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 252 PRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPP- 310
           P  S R+ P PAPCL+     LR +     K + +  F R L  S    A   F +  P 
Sbjct: 94  PLQSARSLPGPAPCLKHFPLDLRTSMDGKCKEIAEELFTRSLAESELRSAPYEFPEESPI 153

Query: 311 HALAGGRRALPRELS 325
             L   R+ L R++S
Sbjct: 154 EQLEERRQRLERQIS 168


>gi|30795231 brain abundant, membrane attached signal protein 1
           [Homo sapiens]
          Length = 227

 Score = 32.3 bits (72), Expect = 0.60
 Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 25/124 (20%)

Query: 23  GAGGCICDPDVCFNQKQGKQGP-----------------ESAVPGSGHTASTRHGQDKF- 64
           GA     +P     Q+Q   GP                 ESA P +G   S   G+ K  
Sbjct: 92  GAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKT 151

Query: 65  -ADLVRAAVGTASASATVFQPPAGLTST------TPFPFLSTISTPSELGLTPSHGEPRP 117
            A    AA  T S  A       G +        TP    +  STP   G   S  EP+P
Sbjct: 152 EAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKP 211

Query: 118 REAP 121
            EAP
Sbjct: 212 VEAP 215


>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 25/160 (15%)

Query: 173 GPLSHLLGPRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFF 232
           GP      PR W   P +  R G++L     L +++L  + R+   + R  G+   C   
Sbjct: 118 GPTPIPRAPRPWRPPPPSPGRVGVLLE---VLPRSLL--QIRRALALGRQRGSYRICANG 172

Query: 233 LFLGRENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRK 292
            +   +   +   C   +L R  G+   +P           R A GPG   + + R L +
Sbjct: 173 FY---KQSRKTPVCCRVLLVRARGKPGCSPR----------RGAAGPGACELGEGRRLPR 219

Query: 293 LPS-SPP--PRAGESFTKIPPHALAGGRRALPRELSFQNK 329
            P  SPP  P + ++  ++PP    GGR A P   S  N+
Sbjct: 220 APGPSPPPLPASADAAGRLPP----GGRLAHPGSASGPNR 255


>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
          Length = 681

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 22/103 (21%)

Query: 34  CFNQKQGK-QGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVFQPPAGLTSTT 92
           CF++K+ + + P+ A+        +   +D +  LV     +A + A+ F+ P  L    
Sbjct: 161 CFSEKRARSESPQEALLLPRELGPSMAPEDHYRRLV-----SALSEASTFEDPQRLY--- 212

Query: 93  PFPFLSTISTPSELGLTPSHGEPRPREAPYHHLALREVIKAWQ 135
                        LGL PSHGE  P   P HHL   ++++  Q
Sbjct: 213 ------------HLGL-PSHGEDPPWHDPPHHLPSHDLLRVRQ 242


>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
           sapiens]
          Length = 756

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 19/97 (19%)

Query: 238 ENGGRDGACSIEVLPRTSGRTHPAP-------APCLREAASGLRAAGG--------PGFK 282
           E GG DG  + ++ P  +     AP       +P L E A G  A GG        PG +
Sbjct: 20  EPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLE 79

Query: 283 GVIKVRFLRKLPSSPPPRAGESFTKIPPHALAGGRRA 319
           G  +       PS+PPPR+G       P A   G R+
Sbjct: 80  GGPR----DPGPSAPPPRSGPRGQLASPDAPGPGPRS 112


>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 2   GHWASRTITTPNTSNREVSQAGAGGCICDP------------DVCFNQKQGKQGPESAVP 49
           GH  S     P  S       GAGG +C P                 ++ G  GP    P
Sbjct: 51  GH--SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAP 108

Query: 50  GSGHTASTRH------GQDKFADLVRAAVGTASASATVFQPPA 86
           G G  A+TR        +   A + RA   TA++SA     PA
Sbjct: 109 GRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151


>gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo
           sapiens]
          Length = 351

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
           +W + KA   E +++G   + G G      F  F+G +NGG+       ++ R   R  P
Sbjct: 6   LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57

Query: 261 APAPCLREAASGLRAAG 277
                  E   G RA G
Sbjct: 58  PKPTLALEYTYGRRAKG 74


>gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo
           sapiens]
          Length = 201

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
           +W + KA   E +++G   + G G      F  F+G +NGG+       ++ R   R  P
Sbjct: 6   LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57

Query: 261 APAPCLREAASGLRAAG 277
                  E   G RA G
Sbjct: 58  PKPTLALEYTYGRRAKG 74


>gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo
           sapiens]
          Length = 334

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
           +W + KA   E +++G   + G G      F  F+G +NGG+       ++ R   R  P
Sbjct: 6   LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57

Query: 261 APAPCLREAASGLRAAG 277
                  E   G RA G
Sbjct: 58  PKPTLALEYTYGRRAKG 74


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 236 GRENGGRDGACSIEVLPRTSGRT------HPAPAPCLREAASGLRAAGGPG 280
           GR  GG  G+ S    P T  R        PAP PC     SG +A GG G
Sbjct: 157 GRAGGGIPGSSSPH--PGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKG 205


>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
          Length = 558

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 23  GAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVF 82
           G GG  C+P++         G      G G  +ST          + A+ G++S+S++  
Sbjct: 98  GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTP---------INASTGSSSSSSSSS 148

Query: 83  QPPAGLTSTT-------PFPFLSTISTPSELGLTPSHGE 114
              +  +S++       P P     STPS +  TP + E
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNE 187


>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
          Length = 706

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 23  GAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVF 82
           G GG  C+P++         G      G G  +ST          + A+ G++S+S++  
Sbjct: 98  GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTP---------INASTGSSSSSSSSS 148

Query: 83  QPPAGLTSTT-------PFPFLSTISTPSELGLTPSHGE 114
              +  +S++       P P     STPS +  TP + E
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNE 187


>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
          Length = 504

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 23  GAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVF 82
           G GG  C+P++         G      G G  +ST          + A+ G++S+S++  
Sbjct: 98  GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTP---------INASTGSSSSSSSSS 148

Query: 83  QPPAGLTSTT-------PFPFLSTISTPSELGLTPSHGE 114
              +  +S++       P P     STPS +  TP + E
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNE 187


>gi|239753034 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 429

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 255 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 306
           SGR+ P P   L+        +GGPG       R L+  P SP        P R+GE   
Sbjct: 364 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 416

Query: 307 KIPPHALAGGRR 318
                   GGRR
Sbjct: 417 DTEARGPVGGRR 428


>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 260 PAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR----AGESFTKIPPHALAG 315
           P P       A  + AA  PG         L   PSSPPPR    +G     +PP ALA 
Sbjct: 95  PLPPALQPRGAPAVPAAPSPGP--------LPARPSSPPPRPSLPSGPHRPVLPPSALAA 146

Query: 316 GRRALPREL 324
            R  L R L
Sbjct: 147 PRPPLARPL 155


>gi|239747584 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 429

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 255 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 306
           SGR+ P P   L+        +GGPG       R L+  P SP        P R+GE   
Sbjct: 364 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 416

Query: 307 KIPPHALAGGRR 318
                   GGRR
Sbjct: 417 DTEARGPVGGRR 428


>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 260 PAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR----AGESFTKIPPHALAG 315
           P P       A  + AA  PG         L   PSSPPPR    +G     +PP ALA 
Sbjct: 95  PLPPALQPRGAPAVPAAPSPGP--------LPARPSSPPPRPSLPSGPHRPVLPPSALAA 146

Query: 316 GRRALPREL 324
            R  L R L
Sbjct: 147 PRPPLARPL 155


>gi|239741451 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 175

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 255 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 306
           SGR+ P P   L+        +GGPG       R L+  P SP        P R+GE   
Sbjct: 110 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 162

Query: 307 KIPPHALAGGRR 318
                   GGRR
Sbjct: 163 DTEARGPVGGRR 174


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 236 GRENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPS 295
           G   G + G  +  V     G+ HP P   +  ++SG  A+G P  K          LPS
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSG--ASGAPPTKPPTTPVGGGNLPS 287

Query: 296 SPPP 299
           +PPP
Sbjct: 288 APPP 291


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 236 GRENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPS 295
           G   G + G  +  V     G+ HP P   +  ++SG  A+G P  K          LPS
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSG--ASGAPPTKPPTTPVGGGNLPS 287

Query: 296 SPPP 299
           +PPP
Sbjct: 288 APPP 291


>gi|14249622 ajuba isoform 1 [Homo sapiens]
          Length = 538

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 22  AGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATV 81
           AGAG     P     +++G Q    +V G G  A     QD+   L+R  VGT    A  
Sbjct: 242 AGAGVGAAGP----LERRGAQPGRHSVTGYGDCAVGARYQDELTALLRLTVGTGGREAGA 297

Query: 82  FQPPAGLTST----TPFPFL 97
              P+G+  +     P PF+
Sbjct: 298 RGEPSGIEPSGLEEPPGPFV 317


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 19/59 (32%), Positives = 25/59 (42%)

Query: 242 RDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
           RD A +    P   G+  P+P         G RAAGG G +   + R  R   S+  PR
Sbjct: 346 RDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPR 404


>gi|168229161 coronin 7 [Homo sapiens]
          Length = 925

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 67  LVRAAVGTASASATVFQPPAGLTS-TTPFPFLSTISTPSELGLTPS 111
           ++   VG A AS     PP+ LTS +TP     ++S+ S +G +PS
Sbjct: 414 VMETPVGDADASEGFSSPPSSLTSPSTPSSLGPSLSSTSGIGTSPS 459


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,833,315
Number of Sequences: 37866
Number of extensions: 857014
Number of successful extensions: 3012
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2975
Number of HSP's gapped (non-prelim): 86
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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