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Search of human proteins with 239747728
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo
sapiens]
(342 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo ... 725 0.0
gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo ... 725 0.0
gi|239741594 PREDICTED: hypothetical protein XP_002342244 [Homo ... 725 0.0
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 37 0.033
gi|14211869 late cornified envelope 3D [Homo sapiens] 37 0.033
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 35 0.074
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 35 0.074
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens] 34 0.22
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 34 0.22
gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary... 34 0.22
gi|12056465 fibrillarin [Homo sapiens] 34 0.22
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 34 0.22
gi|55956788 nucleolin [Homo sapiens] 33 0.28
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 33 0.28
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|13994190 frizzled 8 [Homo sapiens] 33 0.28
gi|109452587 family with sequence similarity 98, member B isofor... 33 0.28
gi|57864582 hornerin [Homo sapiens] 33 0.37
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ... 33 0.37
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 33 0.37
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens] 33 0.37
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ... 33 0.37
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 33 0.37
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 33 0.37
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 33 0.37
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 32 0.63
gi|119395750 keratin 1 [Homo sapiens] 32 0.82
>gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo
sapiens]
Length = 342
Score = 725 bits (1872), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA 60
MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA
Sbjct: 1 MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA 60
Query: 61 GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR 120
GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR
Sbjct: 61 GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR 120
Query: 121 EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI 180
EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI
Sbjct: 121 EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI 180
Query: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG
Sbjct: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
Query: 241 LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW 300
LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW
Sbjct: 241 LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW 300
Query: 301 RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW 342
RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW
Sbjct: 301 RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW 342
>gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo
sapiens]
Length = 342
Score = 725 bits (1872), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA 60
MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA
Sbjct: 1 MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA 60
Query: 61 GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR 120
GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR
Sbjct: 61 GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR 120
Query: 121 EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI 180
EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI
Sbjct: 121 EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI 180
Query: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG
Sbjct: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
Query: 241 LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW 300
LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW
Sbjct: 241 LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW 300
Query: 301 RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW 342
RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW
Sbjct: 301 RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW 342
>gi|239741594 PREDICTED: hypothetical protein XP_002342244 [Homo
sapiens]
Length = 342
Score = 725 bits (1872), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA 60
MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA
Sbjct: 1 MECLSNIQDRQKKLHLKRYLFHKTREPLNWNPGQHANEEIKTKKLVGSSPHHTPGSWAVA 60
Query: 61 GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR 120
GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR
Sbjct: 61 GLYQNSLLPISPRTTPLEALSLHCGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRR 120
Query: 121 EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI 180
EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI
Sbjct: 121 EPGAECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTSKPNQPDKSTTLALGYI 180
Query: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG
Sbjct: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
Query: 241 LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW 300
LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW
Sbjct: 241 LPLQHLQLLQVFVLVLLFLLLFFLLVLGLPHELVLERGLRPGWAVRGRDQRRLVQVFHGW 300
Query: 301 RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW 342
RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW
Sbjct: 301 RVEMMLQLLPPPPGPRLRAAGGCGGWGGLRGAGPTEPRDLLW 342
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 36.6 bits (83), Expect = 0.033
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 4/135 (2%)
Query: 107 KRKGATHASQE-VRREPG-AECRPTDPQQNCTFSKGATQTGRQKHLLKISGCQGLSFLTS 164
+R GA AS R PG A R + C G + L++ G + +
Sbjct: 116 RRTGAAGASPAGARSHPGRASRRGASDRARCARGLGGPRVAAASELVRRGLASGAA--RA 173
Query: 165 KPNQPDKSTTLALGYIPGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSG 224
+P P + L L + G+ + + R RR A +P LP R G G
Sbjct: 174 RPASPAPARLLPLAVGASAAAGDTRRTEARAEPSPSRRRRRRCCAPLPGSLPARRPGCGG 233
Query: 225 RQGGGGHWGRGQPGG 239
R+ GG G+G G
Sbjct: 234 RRAGGARAGQGAHTG 248
>gi|14211869 late cornified envelope 3D [Homo sapiens]
Length = 92
Score = 36.6 bits (83), Expect = 0.033
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 166 PNQPDKSTTLALGYIPGSYYGELGGRDCGSRQRG--WRGHGRRHRARVPRRLPLRGDGGS 223
P P KS L GG CG G + H RRH R R+ P D GS
Sbjct: 19 PKCPPKSPVQCLPPASSGCAPSSGG--CGPSSEGGCFLNHHRRHH-RCRRQRPNSCDRGS 75
Query: 224 GRQGGGGHWGRGQPG 238
G+QGGG G G G
Sbjct: 76 GQQGGGSGCGHGSGG 90
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 35.4 bits (80), Expect = 0.074
Identities = 25/55 (45%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 189 GGRDCGSRQRGWRGHGR-RHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGLP 242
GG CG + RG GR R R R R P G G G GGG G G GGG P
Sbjct: 70 GGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGG--DGGGCGGGGSGGGGAP 122
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 35.4 bits (80), Expect = 0.074
Identities = 25/55 (45%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 189 GGRDCGSRQRGWRGHGR-RHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGLP 242
GG CG + RG GR R R R R P G G G GGG G G GGG P
Sbjct: 70 GGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGG--DGGGCGGGGSGGGGAP 122
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 34.3 bits (77), Expect = 0.17
Identities = 45/164 (27%), Positives = 57/164 (34%), Gaps = 20/164 (12%)
Query: 84 CGWVNVDVFHSASSPRAQEEGEGKRKGATHASQEVRREPGAECRPTDPQQNCTFSKGATQ 143
CG V SS G G R+ A A E +E G R P T S+G T+
Sbjct: 15 CGSDTAGVTCRVSSQDGDRRGLG-REAAPGAPAEGEKEKGKNSRRPRP----TCSRGRTE 69
Query: 144 TGRQKHLLKISGCQGLSFLTSKPNQP-DKSTTLALGYIPGSYYGEL----GGRDCGSRQR 198
GR + +G P + A + + + L +R
Sbjct: 70 RGRVE--------RGADHQERPAGAPAHRPVPAAAAILRAAVHRVLRVLRAAAAVRDAER 121
Query: 199 GWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGLP 242
G R G R A P R LRG G+ GH GR P GG P
Sbjct: 122 GLRREGPRRHA--PPRKQLRGRRGAAGLVSAGHLGREPPRGGGP 163
>gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]
Length = 259
Score = 33.9 bits (76), Expect = 0.22
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 213 RRLPLRGDGGSGRQGGGGHWGRGQPGGGLPLQHLQL-LQVFVL 254
RRL G G G GG G G PGGGLP L+L LQV +L
Sbjct: 155 RRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLL 197
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 187 ELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
EL CG R++ R R+R R GD G G GGGG G G PGGG
Sbjct: 178 ELRRELCGQRRKK-----HRSRSRSRERHSRSGDRGHGDGGGGG--GGGGPGGG 224
>gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 187 ELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
EL CG R++ R R+R R GD G G GGGG G G PGGG
Sbjct: 178 ELRRELCGQRRKK-----HRSRSRSRERHSRSGDRGHGDGGGGG--GGGGPGGG 224
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 185 YGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
+G+ GGR G RG G R R G GG G GGGG G G+ GGG
Sbjct: 18 FGDRGGRGGRGGFGGGRGRGGGFRGR--------GRGGGG--GGGGGGGGGRGGGG 63
Score = 32.0 bits (71), Expect = 0.82
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 15/55 (27%)
Query: 186 GELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
G GGR G RG RG RG G GR GGG GRG+ GGG
Sbjct: 10 GGFGGRG-GFGDRGGRGG--------------RGGFGGGRGRGGGFRGRGRGGGG 49
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 33.9 bits (76), Expect = 0.22
Identities = 40/141 (28%), Positives = 51/141 (36%), Gaps = 14/141 (9%)
Query: 99 RAQEEGEGK-----RKGATHASQEVRREPGAECRPTDPQQNCTFSKGATQTGRQKHLLKI 153
R+ EEG+G R+ S + R E E C F +G G +K +
Sbjct: 136 RSIEEGDGAFGRSPREIQRSQSWDDRGERRFEKSARRDGARCGFEEGGA--GPRKEHARS 193
Query: 154 SGCQGLSFLTSKPNQPDKSTTLALGYIPGSYYGELGGRDCGSRQRGWRGHGRRHRARVPR 213
S + + + S L G D G R GWR HG R R
Sbjct: 194 DSENWRSLREEQEEEEEGSWRLGAGPRRDGDRWRSASPDGGPRSAGWREHGERRR---KF 250
Query: 214 RLPLRGD-GGSGRQ---GGGG 230
LRGD GG G + GGGG
Sbjct: 251 EFDLRGDRGGCGEEEGRGGGG 271
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 33.5 bits (75), Expect = 0.28
Identities = 25/56 (44%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 186 GELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWG-RGQPGGG 240
G GGR G G RG GR R G GG GR G GG G RG GGG
Sbjct: 651 GGFGGRGGGRGGFGGRGGGRGGRG---------GFGGRGRGGFGGRGGFRGGRGGG 697
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 33.5 bits (75), Expect = 0.28
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 194 GSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGL 241
G RG G G P P RG G GR GGG GRG PGGG+
Sbjct: 701 GPYHRGRGGRGGNEPPPPPP--PFRGARG-GRSGGGPPNGRGGPGGGM 745
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 181 PGSYY---GELGGRDCGSRQRGWRG-HGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQ 236
PG Y+ G GG + +RG G R P RG G G GGGGH
Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNG---RGGPGGGMVGGGGHRPHEG 756
Query: 237 PGGGL 241
PGGG+
Sbjct: 757 PGGGM 761
Score = 30.0 bits (66), Expect = 3.1
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
PG G G G G G R P G GGS GGGGH PGGG
Sbjct: 757 PGGGMGNSSGHRPHEGPGGGMGSGHR---------PHEGPGGS-MGGGGGHRPHEGPGGG 806
Query: 241 L 241
+
Sbjct: 807 I 807
Score = 28.9 bits (63), Expect = 7.0
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 186 GELGGRDCGSRQR----GWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGL 241
G GG G R G G G HR P G GG G GG GH PGGG+
Sbjct: 772 GPGGGMGSGHRPHEGPGGSMGGGGGHR-------PHEGPGG-GISGGSGHRPHEGPGGGM 823
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.5 bits (75), Expect = 0.28
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 198 RGWRGHGRR----HRARVPRRLPLRGDGGSGRQGGGG 230
RGW G G H+ +P LRG GG GGGG
Sbjct: 175 RGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGG 211
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.5 bits (75), Expect = 0.28
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 198 RGWRGHGRR----HRARVPRRLPLRGDGGSGRQGGGG 230
RGW G G H+ +P LRG GG GGGG
Sbjct: 175 RGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGG 211
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.5 bits (75), Expect = 0.28
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 198 RGWRGHGRR----HRARVPRRLPLRGDGGSGRQGGGG 230
RGW G G H+ +P LRG GG GGGG
Sbjct: 175 RGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGG 211
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 33.5 bits (75), Expect = 0.28
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 194 GSRQRGWRGHGRRHRARVPRRLPLRGDGGS------GRQGGGGHWGRGQPGGGLPLQ 244
G + GHGR AR P R RG GG R GGGG R GG P +
Sbjct: 173 GEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGGGKARPPGGGAAPCE 229
Score = 32.0 bits (71), Expect = 0.82
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 219 GDGGSGRQGGGGHWGRGQPGGG 240
G GG G GGGG G G PGGG
Sbjct: 640 GGGGPGGGGGGGPGGGGGPGGG 661
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 33.5 bits (75), Expect = 0.28
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 219 GDGGSGRQGGGGHWGRGQPGGG 240
G GG GR GGGG GRG GGG
Sbjct: 341 GGGGGGRGGGGGGGGRGGWGGG 362
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Query: 178 GYIPGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQP 237
G+ G G GG G + GW G G G GG G GGGG WG G
Sbjct: 337 GWGGGGGGGGRGGGGGGGGRGGWGGGGG-------------GWGGGG--GGGGGWGGGGG 381
Query: 238 GG 239
GG
Sbjct: 382 GG 383
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 199 GWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
GW G G R R G GG G +GG G G G P GG
Sbjct: 375 GWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGG 416
Score = 31.2 bits (69), Expect = 1.4
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 219 GDGGSGRQG---GGGHWGRGQPGGG 240
G GG GR G GGG WG G GGG
Sbjct: 350 GGGGGGRGGWGGGGGGWGGGGGGGG 374
Score = 28.9 bits (63), Expect = 7.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 307 QLLPPPPG-----PRLRAAGGCGGWGGLRGAG 333
++ PPPP R GG GGWGG G G
Sbjct: 314 EIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGG 345
Score = 28.9 bits (63), Expect = 7.0
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 218 RGDGGSGR---QGGGGHWGRGQPGGG 240
R +GG GR GGGG GRG GGG
Sbjct: 328 RQEGGGGRGGWGGGGGGGGRGGGGGG 353
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 33.1 bits (74), Expect = 0.37
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 93 HSASSPRAQEEGEGKRKGATHASQEVRR------EPGAECRPTDPQQNCTFSKGATQTGR 146
H ASS ++ G+ G++ +S R+ PG R + +Q+ ++ + + +GR
Sbjct: 1562 HGASSGQSSSHGQ-HGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGR 1620
Query: 147 Q----KHLLKISGCQGLSFLTSKPNQPDKSTTLALGYIPGSYYGELGGRDCGSRQRGWRG 202
+H + G S Q + G S YG+ G R G RG R
Sbjct: 1621 SSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRS-GQSSRGER- 1678
Query: 203 HGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGLP 242
HG R+ G GSG + GH +G G P
Sbjct: 1679 HGSSSRSS-----SRYGQHGSGSRQSSGHGRQGSGSGQSP 1713
Score = 30.0 bits (66), Expect = 3.1
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 18/160 (11%)
Query: 93 HSASSPRAQEEGEGKRKGATHASQEVRR------EPGAECRPTDPQQNCTFSKGATQTGR 146
H ASS ++ G+ G++ +S R+ PG R + +Q+ ++ + + +GR
Sbjct: 1092 HGASSGQSSSHGQ-HGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGR 1150
Query: 147 Q----KHLLKISGCQGLSFLTSKPNQPDKSTTLALGYIPGSYYGELGGRDCGSRQRGWRG 202
+H + G S Q + G S YG+ G R G RG R
Sbjct: 1151 SSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRS-GQSSRGER- 1208
Query: 203 HGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGLP 242
HG + G GSG + GH +G G P
Sbjct: 1209 HGSSSGSSSHY-----GQHGSGSRQSSGHGRQGSGSGHSP 1243
Score = 30.0 bits (66), Expect = 3.1
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 18/160 (11%)
Query: 93 HSASSPRAQEEGEGKRKGATHASQEVRR------EPGAECRPTDPQQNCTFSKGATQTGR 146
H ASS ++ G+ G++ +S R+ PG R + +Q+ ++ + + +GR
Sbjct: 2032 HGASSGQSSSHGQ-HGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGR 2090
Query: 147 Q----KHLLKISGCQGLSFLTSKPNQPDKSTTLALGYIPGSYYGELGGRDCGSRQRGWRG 202
+H + G S Q + G S YG+ G R G RG R
Sbjct: 2091 SSSSGQHGPGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRS-GQSSRGER- 2148
Query: 203 HGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGLP 242
HG + G GSG + GH +G G P
Sbjct: 2149 HGSSSGSS-----SRYGQHGSGSRQSSGHGRQGSGSGHSP 2183
Score = 30.0 bits (66), Expect = 3.1
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 18/160 (11%)
Query: 93 HSASSPRAQEEGEGKRKGATHASQEVRR------EPGAECRPTDPQQNCTFSKGATQTGR 146
H ASS ++ G+ G++ +S R+ PG R + +Q+ ++ + + +GR
Sbjct: 2502 HGASSGQSSSHGQ-HGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGR 2560
Query: 147 Q----KHLLKISGCQGLSFLTSKPNQPDKSTTLALGYIPGSYYGELGGRDCGSRQRGWRG 202
+H + G S Q + G S YG+ G R G RG R
Sbjct: 2561 SSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRS-GQSSRGER- 2618
Query: 203 HGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGLP 242
HG + G GSG + GH +G G P
Sbjct: 2619 HGSSSGSSSHY-----GQHGSGSRQSSGHGRQGSGSGQSP 2653
>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
sapiens]
Length = 600
Score = 33.1 bits (74), Expect = 0.37
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 190 GRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGL 241
GR S +R RGHGR +AR P R G G G H G G P G L
Sbjct: 381 GRPGQSLRRSGRGHGRGIQARDTGGGP-RNRGQEGTHASGRHAGEGAPHGKL 431
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 33.1 bits (74), Expect = 0.37
Identities = 24/58 (41%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 194 GSRQRGWRGHGRRHRARVPRRL---------PLRGDGGSGRQGGGGHWGRGQPGGGLP 242
GS Q G GR R PRR P RG GR GGG G GGGLP
Sbjct: 23 GSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLP 80
>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 510
Score = 33.1 bits (74), Expect = 0.37
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 190 GRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGL 241
GR S +R RGHGR +AR P R G G G H G G P G L
Sbjct: 238 GRPGQSLRRSGRGHGRGIQARDTGGGP-RNRGQEGTHASGRHAGEGAPHGKL 288
>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
sapiens]
Length = 457
Score = 33.1 bits (74), Expect = 0.37
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 190 GRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGGL 241
GR S +R RGHGR +AR P R G G G H G G P G L
Sbjct: 238 GRPGQSLRRSGRGHGRGIQARDTGGGP-RNRGQEGTHASGRHAGEGAPHGKL 288
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 33.1 bits (74), Expect = 0.37
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 18/64 (28%)
Query: 185 YGELGGRDCGSRQRGWR-------GHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQP 237
Y + GRD G R G GHG RG GG G GGGG GRG+
Sbjct: 5 YHQNWGRDGGPRSSGGGYGGGPAGGHGGN-----------RGSGGGGGGGGGGRGGRGRH 53
Query: 238 GGGL 241
G L
Sbjct: 54 PGHL 57
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 33.1 bits (74), Expect = 0.37
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 18/64 (28%)
Query: 185 YGELGGRDCGSRQRGWR-------GHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQP 237
Y + GRD G R G GHG RG GG G GGGG GRG+
Sbjct: 5 YHQNWGRDGGPRSSGGGYGGGPAGGHGGN-----------RGSGGGGGGGGGGRGGRGRH 53
Query: 238 GGGL 241
G L
Sbjct: 54 PGHL 57
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 33.1 bits (74), Expect = 0.37
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 211 VPRRLPLRGDGGSGRQGGGG--HWGRGQPGGGLPLQHLQLLQ 250
+P R L+G GG G GGG H G P G +P + L LL+
Sbjct: 7 LPARGTLQGGGGGGIPAGGGRVHRGPDSPAGQVPTRRLLLLR 48
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 32.3 bits (72), Expect = 0.63
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 181 PGSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRL----PLRGDGGSGRQGGGGHWGRGQ 236
P + LGGR G + R VP +L PL GG G +GGG G G+
Sbjct: 128 PAATLAALGGRRPGPPEEP-----PRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGE 182
Query: 237 PGGGLP 242
GG P
Sbjct: 183 REGGAP 188
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 32.0 bits (71), Expect = 0.82
Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 182 GSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGGG 240
GS YG GG GS G G G G GGS GGG +G G GGG
Sbjct: 529 GSSYGS-GGGSYGSGGGGGGGRGSY------------GSGGSSYGSGGGSYGSGGGGGG 574
Score = 28.9 bits (63), Expect = 7.0
Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 182 GSYYGELGGRDCGSRQRGWRGHGRRHRARVPRRLPLRGDGGSGRQGGGGHWGRGQPGG 239
GSY GG GS G G R GGSG GGG GRG GG
Sbjct: 564 GSYGSGGGGGGHGSYGSGSSSGGYR--------------GGSGGGGGGSSGGRGSGGG 607
Score = 28.5 bits (62), Expect = 9.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 219 GDGGSGRQGGGGHWGRGQPGGG 240
G GGS GGG +G G GGG
Sbjct: 526 GSGGSSYGSGGGSYGSGGGGGG 547
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,342,991
Number of Sequences: 37866
Number of extensions: 964017
Number of successful extensions: 6984
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 5792
Number of HSP's gapped (non-prelim): 1021
length of query: 342
length of database: 18,247,518
effective HSP length: 103
effective length of query: 239
effective length of database: 14,347,320
effective search space: 3429009480
effective search space used: 3429009480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.