Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239747532

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747532 PREDICTED: hypothetical protein XP_002347654 [Homo
sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747532 PREDICTED: hypothetical protein XP_002347654 [Homo ...   260   2e-70
gi|239741408 PREDICTED: hypothetical protein XP_002342164 [Homo ...   260   2e-70
gi|239753012 PREDICTED: similar to hCG2024922 [Homo sapiens]          256   3e-69
gi|126131104 fibrocystin isoform 2 [Homo sapiens]                      30   0.41 
gi|126131102 fibrocystin isoform 1 [Homo sapiens]                      30   0.41 
gi|21704279 jagged 2 isoform b precursor [Homo sapiens]                30   0.41 
gi|21704277 jagged 2 isoform a precursor [Homo sapiens]                30   0.41 
gi|144953905 hypothetical protein LOC55138 [Homo sapiens]              30   0.53 
gi|47716512 mex-3 homolog B [Homo sapiens]                             29   0.91 
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    28   1.6  
gi|110349719 titin isoform N2-A [Homo sapiens]                         27   2.6  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      27   2.6  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      27   2.6  
gi|110349715 titin isoform N2-B [Homo sapiens]                         27   2.6  
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ...    27   2.6  
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ...    27   2.6  
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ...    27   2.6  
gi|149944548 neurobeachin-like 2 [Homo sapiens]                        27   2.6  
gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens]           27   2.6  
gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens]            27   2.6  
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           27   2.6  
gi|31044434 kidney associated antigen 1 [Homo sapiens]                 27   2.6  
gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens]               27   2.6  
gi|24371241 zinc finger, DHHC-type containing 14 isoform 1 [Homo...    27   3.5  
gi|24371272 zinc finger, DHHC-type containing 14 isoform 2 [Homo...    27   3.5  
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]        27   4.5  
gi|239754935 PREDICTED: hypothetical protein [Homo sapiens]            27   4.5  
gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo ...    27   4.5  
gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo ...    27   4.5  
gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo ...    27   4.5  

>gi|239747532 PREDICTED: hypothetical protein XP_002347654 [Homo
           sapiens]
          Length = 117

 Score =  260 bits (664), Expect = 2e-70
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP 60
           MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP
Sbjct: 1   MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP 60

Query: 61  CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
           CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL
Sbjct: 61  CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117


>gi|239741408 PREDICTED: hypothetical protein XP_002342164 [Homo
           sapiens]
          Length = 117

 Score =  260 bits (664), Expect = 2e-70
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP 60
           MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP
Sbjct: 1   MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP 60

Query: 61  CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
           CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL
Sbjct: 61  CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117


>gi|239753012 PREDICTED: similar to hCG2024922 [Homo sapiens]
          Length = 117

 Score =  256 bits (654), Expect = 3e-69
 Identities = 116/117 (99%), Positives = 116/117 (99%)

Query: 1   MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP 60
           MPPSPEETEVPEAKGCHFLLRVVPVSGAFCE REGHKLDTGNTHTFACGCFVSVPEPLGP
Sbjct: 1   MPPSPEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGP 60

Query: 61  CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
           CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL
Sbjct: 61  CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117


>gi|126131104 fibrocystin isoform 2 [Homo sapiens]
          Length = 3396

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 20/55 (36%), Positives = 21/55 (38%)

Query: 21  RVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGPCCSFLLVLQSPACAH 75
           RVV   G F  P  G  L T N HT        VP      CSF  +  S  C H
Sbjct: 880 RVVYDGGVFLGPIFGDMLATANQHTQVVVRVNDVPAHCPGSCSFQYLQGSTPCVH 934


>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
          Length = 4074

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 20/55 (36%), Positives = 21/55 (38%)

Query: 21  RVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGPCCSFLLVLQSPACAH 75
           RVV   G F  P  G  L T N HT        VP      CSF  +  S  C H
Sbjct: 880 RVVYDGGVFLGPIFGDMLATANQHTQVVVRVNDVPAHCPGSCSFQYLQGSTPCVH 934


>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
          Length = 1200

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 78  GWRPCQLPGQPRITAPGCP 96
           GW+PC L GQP   +  CP
Sbjct: 869 GWKPCLLAGQPEALSAQCP 887


>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
          Length = 1238

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 78  GWRPCQLPGQPRITAPGCP 96
           GW+PC L GQP   +  CP
Sbjct: 907 GWKPCLLAGQPEALSAQCP 925


>gi|144953905 hypothetical protein LOC55138 [Homo sapiens]
          Length = 464

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 9   EVPEAKG-CHFLLRVVP---------VSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPL 58
           EVP+A    H LL+ V          V+   C P   H L  G+  +F  G   S P P+
Sbjct: 239 EVPQAASKTHGLLQAVSPQAQDKRPAVTSQPCPPAATHSLGLGSNLSFGPGAKRSAPAPI 298

Query: 59  GPCCSF 64
             C +F
Sbjct: 299 QACLNF 304


>gi|47716512 mex-3 homolog B [Homo sapiens]
          Length = 569

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 24  PVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGPCCSFLLVLQSPACAHLPG 78
           P S A      G+  + GN +T+  G   SVP P G  C  L     PA A  PG
Sbjct: 320 PPSPALSFAHNGNNNNNGNGYTYTAGGEASVPSPDG--CPELQPTFDPAPAPPPG 372


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
           sapiens]
          Length = 1751

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 48  CGCFVSVPEPLGP-CCSFLLVLQSPACAHLPGWR--------PCQLPGQPRITAPGCPQA 98
           CG   SVP P  P CC F   LQ    + L G R        P Q  G   +  P   + 
Sbjct: 397 CG---SVPPPAPPPCCQFCEALQDACWSRLGGGRLPVACASLPTQEDGYCVLIGPAAERI 453

Query: 99  THRLHRLQLL 108
           +  +  LQLL
Sbjct: 454 SEEVGLLQLL 463


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 70    SPACAHLPGWRPCQLPGQPRIT 91
             S +C  +P   PC  PGQP +T
Sbjct: 25673 SKSCEPVPARDPCDPPGQPEVT 25694


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 70    SPACAHLPGWRPCQLPGQPRIT 91
             S +C  +P   PC  PGQP +T
Sbjct: 19368 SKSCEPVPARDPCDPPGQPEVT 19389


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 70    SPACAHLPGWRPCQLPGQPRIT 91
             S +C  +P   PC  PGQP +T
Sbjct: 19301 SKSCEPVPARDPCDPPGQPEVT 19322


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 70    SPACAHLPGWRPCQLPGQPRIT 91
             S +C  +P   PC  PGQP +T
Sbjct: 19176 SKSCEPVPARDPCDPPGQPEVT 19197


>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
           sapiens]
          Length = 218

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 5   PEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGPCCSF 64
           P   E P ++    L R  P + +F         D   T+    G  +++ +PLGPC S 
Sbjct: 109 PNPLEDPVSRSVTILARTEPSNDSF-NVSSVVSSDRPLTNRVLDGWLLALGDPLGPCNSS 167

Query: 65  LLVLQS 70
           L+ L S
Sbjct: 168 LIALPS 173


>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
           sapiens]
          Length = 218

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 5   PEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGPCCSF 64
           P   E P ++    L R  P + +F         D   T+    G  +++ +PLGPC S 
Sbjct: 109 PNPLEDPVSRSVTILARTEPSNDSF-NVSSVVSSDRPLTNRVLDGWLLALGDPLGPCNSS 167

Query: 65  LLVLQS 70
           L+ L S
Sbjct: 168 LIALPS 173


>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
           sapiens]
          Length = 218

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 5   PEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGPCCSF 64
           P   E P ++    L R  P + +F         D   T+    G  +++ +PLGPC S 
Sbjct: 109 PNPLEDPVSRSVTILARTEPSNDSF-NVSSVVSSDRPLTNRVLDGWLLALGDPLGPCNSS 167

Query: 65  LLVLQS 70
           L+ L S
Sbjct: 168 LIALPS 173


>gi|149944548 neurobeachin-like 2 [Homo sapiens]
          Length = 2754

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 78   GWRPCQLPGQPRITAPGCPQATHRLHRL 105
            G  PCQL  +P  T     +A HRL RL
Sbjct: 2331 GQTPCQLLKEPHPTRLSAEEAAHRLARL 2358


>gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens]
          Length = 649

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 57  PLGPCCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATH 100
           P+ PC S L  +QS   A  P W+  Q   Q  +TA     ++H
Sbjct: 312 PMAPCQSALESIQSARAAQAPHWKSLQ---QQDVTAVPMSPSSH 352


>gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens]
          Length = 669

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 57  PLGPCCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATH 100
           P+ PC S L  +QS   A  P W+  Q   Q  +TA     ++H
Sbjct: 332 PMAPCQSALESIQSARAAQAPHWKSLQ---QQDVTAVPMSPSSH 372


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 3   PSPEETEVPEAKGCHFLLRVVPVSGAFCEPR-EGHKLDTGNTHTFACGCFVSVPEPLGPC 61
           PSP  T +   + C   LR +P +    E   E H+ D       A  C V+ P P G  
Sbjct: 134 PSPALTLLLVDEACW--LRTLPQALTEAEANTEIHRKDD------ALWCRVTKPVPAGGL 185

Query: 62  CSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQ 110
            S LL  +           P   PG P    P  P      H LQLL Q
Sbjct: 186 LSVLLTAE-----------PHSTPGHPVKKEPAEPTCPAPAHDLQLLPQ 223


>gi|31044434 kidney associated antigen 1 [Homo sapiens]
          Length = 84

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 72  ACAHLPGWRPCQLPGQPRITAPGCPQATHR 101
           A AHLP W P QL    R  AP   Q  HR
Sbjct: 34  AAAHLPRWPPPQLAASRR-EAPPLSQRPHR 62


>gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens]
          Length = 446

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 44  HTFACGCFVSVPEPLGPCCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLH 103
           HT  CG          P CS       PAC+H+P W   +L  +  +    CP A  R H
Sbjct: 323 HTCHCGV---------PACSHTCRCGVPACSHVPMW-SARLLTRAHVE---CPPAHTRAH 369


>gi|24371241 zinc finger, DHHC-type containing 14 isoform 1 [Homo
           sapiens]
          Length = 488

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 81  PCQLPGQPRITAPGCPQATHR-LHRLQLLLQHTLH 114
           P + P  PR+ A G P A  R +H L L  Q +LH
Sbjct: 441 PDEAPSPPRLLAAGSPLAHSRTMHVLGLASQDSLH 475


>gi|24371272 zinc finger, DHHC-type containing 14 isoform 2 [Homo
           sapiens]
          Length = 473

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 81  PCQLPGQPRITAPGCPQATHR-LHRLQLLLQHTLH 114
           P + P  PR+ A G P A  R +H L L  Q +LH
Sbjct: 426 PDEAPSPPRLLAAGSPLAHSRTMHVLGLASQDSLH 460


>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
          Length = 1035

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)

Query: 84  LPGQPRITAPGCPQATHRLHRLQLLLQHTLHPA 116
           LP +P    P  PQ  H++HR+Q +  H  HPA
Sbjct: 22  LPERPTKRRP--PQPLHQVHRVQFV--HRAHPA 50


>gi|239754935 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 397

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 71  PACAHLPGWRPCQLPG 86
           PAC HL   RPC  PG
Sbjct: 293 PACCHLAPLRPCLSPG 308


>gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo
           sapiens]
          Length = 397

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 71  PACAHLPGWRPCQLPG 86
           PAC HL   RPC  PG
Sbjct: 293 PACCHLAPLRPCLSPG 308


>gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo
           sapiens]
          Length = 324

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 70  SPACAHLPGWRPCQLPGQPRITAP 93
           SP  A L GW PC +P  P  + P
Sbjct: 225 SPTAAPLQGWHPCGVPLIPSGSPP 248


>gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo
           sapiens]
          Length = 397

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 71  PACAHLPGWRPCQLPG 86
           PAC HL   RPC  PG
Sbjct: 293 PACCHLAPLRPCLSPG 308


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.141    0.495 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,614,251
Number of Sequences: 37866
Number of extensions: 356151
Number of successful extensions: 1137
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 57
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press