Guide to the Human Genome
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Name: FAM90A1 Sequence: fasta or formatted (464aa) NCBI GI: 144953905
Description:

hypothetical protein LOC55138

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         44           3
 C cysteine            2.2         10           1
 D aspartate           3.7         17           1
 E glutamate           5.8         27           2
 F phenylalanine       1.9          9           1
 G glycine             6.7         31           2
 H histidine           2.8         13           2
 I isoleucine          1.1          5           1
 K lysine              6.2         29           2
 L leucine             8.4         39           2
 M methionine          1.3          6           2
 N asparagine          2.2         10           1
 P proline            14.4         67           3
 Q glutamine           5.6         26           1
 R arginine            7.5         35           2
 S serine             10.3         48           5
 T threonine           4.5         21           2
 V valine              4.7         22           2
 W tryptophan          0.6          3           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55138 
LOC100287045          0.925   PREDICTED: hypothetical protein XP_002342469 isofor...
LOC100287045          0.925   PREDICTED: hypothetical protein XP_002342468 isofor...
FAM90A5               0.917   PREDICTED: hypothetical protein 
FAM90A15              0.916   PREDICTED: hypothetical protein LOC389630 
FAM90A3               0.916   PREDICTED: hypothetical protein 
FAM90A14              0.913   PREDICTED: hypothetical protein 
FAM90A13              0.913   PREDICTED: hypothetical protein 
FAM90A7               0.913   hypothetical protein LOC441317 
FAM90A9               0.913   PREDICTED: hypothetical protein 
FAM90A10              0.911   PREDICTED: hypothetical protein LOC441328 
FAM90A8               0.907   PREDICTED: hypothetical protein 
FAM90A19              0.905   PREDICTED: hypothetical protein 
FAM90A18              0.905   PREDICTED: hypothetical protein LOC441326 
FAM90A12              0.904   PREDICTED: hypothetical protein 
FAM90A20              0.888   PREDICTED: hypothetical protein 
FAM90A20              0.886   PREDICTED: hypothetical protein 
LOC646508             0.214   PREDICTED: hypothetical LOC646508 
LOC646508             0.214   PREDICTED: hypothetical LOC646508 
LOC646508             0.162   PREDICTED: hypothetical LOC646508 
DACT2                 0.029   dapper, antagonist of beta-catenin, homolog 2 [Homo...
MLL2                  0.029   myeloid/lymphoid or mixed-lineage leukemia 2 
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
PCLO                  0.024   piccolo isoform 2 
PCLO                  0.024   piccolo isoform 1 
GLTSCR1               0.024   glioma tumor suppressor candidate region gene 1 [Ho...
FLJ22184              0.022   PREDICTED: hypothetical protein LOC80164 
HIVEP3                0.022   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.022   human immunodeficiency virus type I enhancer bindin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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