Guide to the Human Genome
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Name: PKHD1 Sequence: fasta or formatted (3396aa) NCBI GI: 126131104
Description:

fibrocystin isoform 2

Referenced in:

Kidney
Semaphorins

Other entries for this name:
alt prot [4074aa] fibrocystin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        195           3
 C cysteine            2.5         85           2
 D aspartate           4.2        144           2
 E glutamate           4.9        167           2
 F phenylalanine       4.3        146           2
 G glycine             8.2        280           3
 H histidine           2.9         98           2
 I isoleucine          5.7        195           3
 K lysine              2.8         96           2
 L leucine            10.0        341           4
 M methionine          1.6         55           1
 N asparagine          4.9        165           2
 P proline             5.3        179           3
 Q glutamine           4.0        137           2
 R arginine            4.5        152           3
 S serine              9.0        306           4
 T threonine           6.5        221           3
 V valine              8.7        294           3
 W tryptophan          1.7         57           1
 Y tyrosine            2.4         83           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibrocystin isoform 2 
PKHD1                 0.997   fibrocystin isoform 1 
PKHD1L1               0.097   fibrocystin L 
TMEM2                 0.006   transmembrane protein 2 isoform a 
TMEM2                 0.006   transmembrane protein 2 isoform b 
KIAA1199              0.005   KIAA1199 
PLXND1                0.004   plexin D1 
MET                   0.003   met proto-oncogene isoform b precursor 
MET                   0.002   met proto-oncogene isoform a precursor 
PLXNA1                0.002   plexin A1 
PLXNB1                0.002   plexin B1 
PLXNB1                0.002   plexin B1 
TTK                   0.002   TTK protein kinase 
PLXNB2                0.002   plexin B2 
PLXNA2                0.002   plexin A2 
PLXNB3                0.001   plexin B3 isoform 2 
PLXNB3                0.001   plexin B3 isoform 1 
PLXNA3                0.001   plexin A3 
MST1R                 0.001   macrophage stimulating 1 receptor precursor 
CCDC142               0.001   coiled-coil domain containing 142 
TLN1                  0.001   talin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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