PKHD1 2856

Name: PKHD1	Sequence: fasta or formatted (3396aa)		NCBI GI: 126131104
Description: fibrocystin isoform 2		Referenced in: Kidney Semaphorins
Other entries for this name: alt prot [4074aa] fibrocystin isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.7 195 3 C cysteine 2.5 85 2 D aspartate 4.2 144 2 E glutamate 4.9 167 2 F phenylalanine 4.3 146 2 G glycine 8.2 280 3 H histidine 2.9 98 2 I isoleucine 5.7 195 3 K lysine 2.8 96 2 L leucine 10.0 341 4 M methionine 1.6 55 1 N asparagine 4.9 165 2 P proline 5.3 179 3 Q glutamine 4.0 137 2 R arginine 4.5 152 3 S serine 9.0 306 4 T threonine 6.5 221 3 V valine 8.7 294 3 W tryptophan 1.7 57 1 Y tyrosine 2.4 83 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 fibrocystin isoform 2 PKHD1 0.997 fibrocystin isoform 1 PKHD1L1 0.097 fibrocystin L TMEM2 0.006 transmembrane protein 2 isoform a TMEM2 0.006 transmembrane protein 2 isoform b KIAA1199 0.005 KIAA1199 PLXND1 0.004 plexin D1 MET 0.003 met proto-oncogene isoform b precursor MET 0.002 met proto-oncogene isoform a precursor PLXNA1 0.002 plexin A1 PLXNB1 0.002 plexin B1 PLXNB1 0.002 plexin B1 TTK 0.002 TTK protein kinase PLXNB2 0.002 plexin B2 PLXNA2 0.002 plexin A2 PLXNB3 0.001 plexin B3 isoform 2 PLXNB3 0.001 plexin B3 isoform 1 PLXNA3 0.001 plexin A3 MST1R 0.001 macrophage stimulating 1 receptor precursor CCDC142 0.001 coiled-coil domain containing 142 TLN1 0.001 talin 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.