Guide to the Human Genome
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Name: LOC100293692 Sequence: fasta or formatted (117aa) NCBI GI: 239753012
Description:

PREDICTED: similar to hCG2024922

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          8           1
 C cysteine            7.7          9           2
 D aspartate           0.9          1           1
 E glutamate           6.0          7           2
 F phenylalanine       4.3          5           1
 G glycine             7.7          9           1
 H histidine           6.8          8           1
 I isoleucine          0.9          1           1
 K lysine              1.7          2           1
 L leucine            14.5         17           3
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            13.7         16           2
 Q glutamine           5.1          6           1
 R arginine            5.1          6           1
 S serine              4.3          5           1
 T threonine           6.0          7           1
 V valine              6.0          7           2
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2024922 
LOC100290715          0.987   PREDICTED: hypothetical protein XP_002347654 
LOC100287911          0.987   PREDICTED: hypothetical protein XP_002342164 
JAG2                  0.021   jagged 2 isoform b precursor 
JAG2                  0.021   jagged 2 isoform a precursor 
MEX3B                 0.017   mex-3 homolog B 
LOC100291797          0.013   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.013   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.013   PREDICTED: hypothetical protein XP_002342316 
COL18A1               0.013   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
TMEM180               0.013   transmembrane protein 180 
TTN                   0.009   titin isoform N2-A 
TTN                   0.009   titin isoform novex-2 
TTN                   0.009   titin isoform novex-1 
TTN                   0.009   titin isoform N2-B 
NBEAL2                0.009   neurobeachin-like 2 
HDAC10                0.009   histone deacetylase 10 isoform 2 
HDAC10                0.009   histone deacetylase 10 isoform 1 
ZFPM1                 0.009   zinc finger protein, multitype 1 
KAAG1                 0.009   kidney associated antigen 1 
CRIPAK                0.009   cysteine-rich PAK1 inhibitor 
ZDHHC14               0.009   zinc finger, DHHC-type containing 14 isoform 1 [Homo...
ZDHHC14               0.009   zinc finger, DHHC-type containing 14 isoform 2 [Homo...
POM121L2              0.009   POM121 membrane glycoprotein-like 2 
LOC100293933          0.009   PREDICTED: hypothetical protein 
LOC100290206          0.009   PREDICTED: hypothetical protein XP_002347062 
LOC100288239          0.009   PREDICTED: hypothetical protein XP_002343261 
LOC100287139          0.009   PREDICTED: hypothetical protein XP_002342915 
BSN                   0.009   bassoon protein 
C2orf53               0.009   hypothetical protein LOC339779 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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