Guide to the Human Genome
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Name: LOC100289394 Sequence: fasta or formatted (218aa) NCBI GI: 239741891
Description:

PREDICTED: hypothetical protein XP_002342316

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         13           2
 C cysteine            0.9          2           1
 D aspartate           3.2          7           1
 E glutamate           2.3          5           1
 F phenylalanine       4.1          9           2
 G glycine             3.2          7           1
 H histidine           0.0          0           0
 I isoleucine          2.8          6           1
 K lysine              5.0         11           1
 L leucine            13.3         29           3
 M methionine          0.9          2           1
 N asparagine          5.0         11           1
 P proline            21.6         47           4
 Q glutamine           1.4          3           1
 R arginine            5.5         12           1
 S serine             14.7         32           3
 T threonine           3.2          7           1
 V valine              4.1          9           2
 W tryptophan          1.8          4           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342316 
LOC100291797          1.000   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          1.000   PREDICTED: hypothetical protein XP_002346504 
FMN1                  0.107   formin 1 
ZFHX4                 0.103   zinc finger homeodomain 4 
PRR12                 0.103   proline rich 12 
LOC645529             0.098   PREDICTED: similar to Putative acrosin-like proteas...
ACR                   0.098   acrosin precursor 
FMNL2                 0.098   formin-like 2 
FMNL1                 0.093   formin-like 1 
ENAH                  0.093   enabled homolog isoform a 
ENAH                  0.093   enabled homolog isoform b 
SETD1B                0.091   SET domain containing 1B 
FHDC1                 0.091   FH2 domain containing 1 
PCLO                  0.089   piccolo isoform 2 
PCLO                  0.089   piccolo isoform 1 
WASF2                 0.086   WAS protein family, member 2 
FMN2                  0.084   formin 2 
WASL                  0.084   Wiskott-Aldrich syndrome gene-like protein 
SETD1A                0.084   SET domain containing 1A 
BAI1                  0.084   brain-specific angiogenesis inhibitor 1 precursor [...
WBP11                 0.082   WW domain binding protein 11 
CPSF6                 0.082   cleavage and polyadenylation specific factor 6, 68 ...
INF2                  0.082   inverted formin 2 isoform 2 
INF2                  0.082   inverted formin 2 isoform 1 
ANTXR1                0.082   anthrax toxin receptor 1 isoform 1 precursor 
DIAPH2                0.079   diaphanous 2 isoform 12C 
DIAPH2                0.079   diaphanous 2 isoform 156 
MLL4                  0.079   myeloid/lymphoid or mixed-lineage leukemia 4 
RBM12                 0.079   RNA binding motif protein 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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