Guide to the Human Genome
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Name: LOC100293933 Sequence: fasta or formatted (397aa) NCBI GI: 239754935
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         46           3
 C cysteine            3.0         12           2
 D aspartate           3.5         14           2
 E glutamate           6.3         25           2
 F phenylalanine       1.3          5           1
 G glycine            13.1         52           4
 H histidine           2.3          9           1
 I isoleucine          2.5         10           1
 K lysine              3.3         13           2
 L leucine            10.3         41           2
 M methionine          0.8          3           1
 N asparagine          1.3          5           1
 P proline             7.8         31           4
 Q glutamine           3.5         14           1
 R arginine           12.6         50           2
 S serine              7.1         28           2
 T threonine           3.5         14           1
 V valine              4.3         17           2
 W tryptophan          1.8          7           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290206          1.000   PREDICTED: hypothetical protein XP_002347062 
LOC100287139          1.000   PREDICTED: hypothetical protein XP_002342915 
LOC643355             0.030   PREDICTED: hypothetical protein 
LOC643355             0.030   PREDICTED: hypothetical protein 
LOC728767             0.029   PREDICTED: hypothetical protein 
LOC728767             0.029   PREDICTED: hypothetical protein 
LOC643153             0.027   PREDICTED: hypothetical protein 
LOC643153             0.027   PREDICTED: hypothetical protein 
LOC643153             0.027   PREDICTED: hypothetical protein 
ZIC5                  0.022   zinc finger protein of the cerebellum 5 
LOC100127891          0.019   PREDICTED: hypothetical protein 
LOC100287514          0.019   PREDICTED: hypothetical protein XP_002343754 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
LOC100289408          0.018   PREDICTED: hypothetical protein 
LOC100289408          0.018   PREDICTED: hypothetical protein XP_002344217 
HOXD9                 0.018   homeobox D9 
TACC2                 0.018   transforming, acidic coiled-coil containing protein...
SHANK1                0.018   SH3 and multiple ankyrin repeat domains 1 
C6orf174              0.015   hypothetical protein LOC387104 
C10orf95              0.015   hypothetical protein LOC79946 
LOC100127930          0.015   PREDICTED: hypothetical protein 
LOC338758             0.015   PREDICTED: hypothetical protein 
LOC338758             0.015   PREDICTED: hypothetical protein 
LOC338758             0.015   PREDICTED: hypothetical protein 
C6orf136              0.015   hypothetical protein LOC221545 isoform 3 
BAT2                  0.015   HLA-B associated transcript-2 
DACT3                 0.015   thymus expressed gene 3-like 
PLEKHH3               0.015   pleckstrin homology domain containing, family H (wit...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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