Guide to the Human Genome
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Name: LOC100290779 Sequence: fasta or formatted (1014aa) NCBI GI: 239747229
Description:

PREDICTED: hypothetical protein XP_002346943

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3        104           4
 C cysteine            2.8         28           2
 D aspartate           3.0         30           1
 E glutamate           5.6         57           3
 F phenylalanine       1.7         17           2
 G glycine             9.2         93           3
 H histidine           2.6         26           1
 I isoleucine          1.3         13           1
 K lysine              3.3         33           2
 L leucine            10.0        101           3
 M methionine          1.2         12           1
 N asparagine          1.4         14           1
 P proline             8.3         84           2
 Q glutamine           8.6         87           2
 R arginine            9.8         99           4
 S serine              8.6         87           2
 T threonine           4.7         48           2
 V valine              4.5         46           2
 W tryptophan          3.0         30           1
 Y tyrosine            0.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346943 
LOC100292054          1.000   PREDICTED: hypothetical protein XP_002345326 
LOC100288041          0.991   PREDICTED: hypothetical protein XP_002342072 
ZNF828                0.009   zinc finger protein 828 
LOC100293604          0.009   PREDICTED: hypothetical protein 
LOC100287837          0.009   PREDICTED: hypothetical protein XP_002343157 
PTPN23                0.008   protein tyrosine phosphatase, non-receptor type 23 [...
PDZD2                 0.008   PDZ domain containing 2 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
CELSR3                0.007   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
KIAA0284              0.006   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.006   hypothetical protein LOC283638 isoform 1 
FLJ22184              0.006   PREDICTED: hypothetical protein LOC80164 
BRD4                  0.006   bromodomain-containing protein 4 isoform long 
NCOA3                 0.005   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.005   nuclear receptor coactivator 3 isoform b 
LOC652119             0.005   PREDICTED: similar to putative DUX4 protein 
LOC100133756          0.005   PREDICTED: hypothetical protein, partial 
RASSF7                0.005   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.005   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.005   Ras association (RalGDS/AF-6) domain family (N-termin...
MAP7D1                0.005   MAP7 domain containing 1 
LOC652119             0.005   PREDICTED: similar to putative DUX4 protein 
ANK2                  0.005   ankyrin 2 isoform 1 
SCARF2                0.005   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.005   scavenger receptor class F, member 2 isoform 2 [Homo...
ZFPM1                 0.005   zinc finger protein, multitype 1 
FHOD3                 0.004   formin homology 2 domain containing 3 
LOC100292122          0.004   PREDICTED: hypothetical protein XP_002345138 
OTOG                  0.004   PREDICTED: otogelin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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