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Search of human proteins with 239747201
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747201 PREDICTED: hypothetical protein [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747201 PREDICTED: hypothetical protein [Homo sapiens] 210 2e-55
gi|239757144 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239756033 PREDICTED: hypothetical protein LOC283486 [Homo sap... 32 0.11
gi|239751663 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239750579 PREDICTED: hypothetical protein LOC283486 [Homo sap... 32 0.11
gi|239746169 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239744878 PREDICTED: hypothetical protein LOC283486 [Homo sap... 32 0.11
gi|239746647 PREDICTED: similar to hCG1646661 [Homo sapiens] 30 0.54
gi|39653317 jumonji domain containing 2D [Homo sapiens] 30 0.54
gi|239754020 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239748551 PREDICTED: hypothetical protein XP_002346721 [Homo ... 29 0.70
gi|239742535 PREDICTED: hypothetical protein XP_002342535 [Homo ... 29 0.70
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 29 0.91
gi|83367077 mucin 16 [Homo sapiens] 28 1.2
gi|116284392 mucin 2 precursor [Homo sapiens] 28 1.2
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 28 1.2
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 28 1.2
gi|134244285 Notch homolog 3 [Homo sapiens] 28 1.6
gi|239751037 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 28 1.6
gi|45007007 2'-5'oligoadenylate synthetase 3 [Homo sapiens] 28 1.6
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 28 1.6
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 28 2.0
gi|169207534 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|169207799 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|16975496 cortactin binding protein 2 [Homo sapiens] 28 2.0
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 27 2.7
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|93102367 ral guanine nucleotide dissociation stimulator-like ... 27 2.7
>gi|239747201 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 210 bits (534), Expect = 2e-55
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MELLRPHRVCGMEPLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPR 60
MELLRPHRVCGMEPLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPR
Sbjct: 1 MELLRPHRVCGMEPLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPR 60
Query: 61 SLSSCMGGPTGSLEPPSVTHTSTLGTPGRAPDASANSCSLA 101
SLSSCMGGPTGSLEPPSVTHTSTLGTPGRAPDASANSCSLA
Sbjct: 61 SLSSCMGGPTGSLEPPSVTHTSTLGTPGRAPDASANSCSLA 101
>gi|239757144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 11 GMEPLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGPT 70
G + W+ C + CRC + + +SSRKLP SL++ P
Sbjct: 86 GPAAAADWSGRCGPGGGSSCRCRCSSSIFRLNSSRKLP------------SLANKFTPPD 133
Query: 71 GSLEPPSVTHTSTLGTPGRAPDAS 94
LEP T +S L PD++
Sbjct: 134 TGLEPAPDTSSSPLSGDVPDPDSA 157
>gi|239756033 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 31 RCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGP-------TGSLEPPSVTHTST 83
RC AG A A + +K P + P +SSC+ GP G E P THT+
Sbjct: 7 RCLRAGP-APAPAWQKAPES----RGLCPEEVSSCVKGPGRGRWVSLGFAEGPG-THTAG 60
Query: 84 LGTPGRAPDASANS 97
L GRA SA S
Sbjct: 61 LAVEGRARGVSARS 74
>gi|239751663 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 11 GMEPLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGPT 70
G + W+ C + CRC + + +SSRKLP SL++ P
Sbjct: 86 GPAAAADWSGRCGPGGGSSCRCRCSSSIFRLNSSRKLP------------SLANKFTPPD 133
Query: 71 GSLEPPSVTHTSTLGTPGRAPDAS 94
LEP T +S L PD++
Sbjct: 134 TGLEPAPDTSSSPLSGDVPDPDSA 157
>gi|239750579 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 31 RCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGP-------TGSLEPPSVTHTST 83
RC AG A A + +K P + P +SSC+ GP G E P THT+
Sbjct: 7 RCLRAGP-APAPAWQKAPES----RGLCPEEVSSCVKGPGRGRWASLGFAEGPG-THTAG 60
Query: 84 LGTPGRAPDASANS 97
L GRA SA S
Sbjct: 61 LAVEGRARGVSARS 74
>gi|239746169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 11 GMEPLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGPT 70
G + W+ C + CRC + + +SSRKLP SL++ P
Sbjct: 86 GPAAAADWSGRCGPGGGSSCRCRCSSSIFRLNSSRKLP------------SLANKFTPPD 133
Query: 71 GSLEPPSVTHTSTLGTPGRAPDAS 94
LEP T +S L PD++
Sbjct: 134 TGLEPAPDTSSSPLSGDVPDPDSA 157
>gi|239744878 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 31 RCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGP-------TGSLEPPSVTHTST 83
RC AG A A + +K P + P +SSC+ GP G E P THT+
Sbjct: 7 RCLRAGP-APAPAWQKAPES----RGLCPEEVSSCVKGPGRGRWASLGFAEGPG-THTAG 60
Query: 84 LGTPGRAPDASANS 97
L GRA SA S
Sbjct: 61 LAVEGRARGVSARS 74
>gi|239746647 PREDICTED: similar to hCG1646661 [Homo sapiens]
Length = 190
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 18 WTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNT-----VTPRSLSSCMGGPTGS 72
W C S S + C + A RK+P PV M+T + P + S C GS
Sbjct: 52 WRTPCTWSPSQEQDCSNTNFCAIVSGLRKVPEPVNLMSTFLLASMRPNTSSYCRF--AGS 109
Query: 73 LEPPSVTHT 81
L PP T
Sbjct: 110 LTPPDCEPT 118
>gi|39653317 jumonji domain containing 2D [Homo sapiens]
Length = 523
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 16 SSWTMMCRSSTSTKCR---CFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGPTGS 72
S W M RS T +C C S +A + PR ++ P S S GP+
Sbjct: 385 SPWPMAARSGT--RCHTLVCSSLPRRSAVSGTATQPRAAAVHSSKKPSSTPSSTPGPSAQ 442
Query: 73 LEPPS-------------VTHTSTLGTPGRAPDASANSCS 99
+ PS TL TP + P + +C+
Sbjct: 443 IIHPSNGRRGRGRPPQKLRAQELTLQTPAKRPLLAGTTCT 482
>gi|239754020 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 14 PLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSL-------SSCM 66
PLSS + CRS+ S C +AG + + P P SL SSC+
Sbjct: 103 PLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCL 162
Query: 67 GGPTGS 72
G T S
Sbjct: 163 GCETWS 168
>gi|239748551 PREDICTED: hypothetical protein XP_002346721 [Homo
sapiens]
Length = 178
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 14 PLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSL-------SSCM 66
PLSS + CRS+ S C +AG + + P P SL SSC+
Sbjct: 103 PLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCL 162
Query: 67 GGPTGS 72
G T S
Sbjct: 163 GCETWS 168
>gi|239742535 PREDICTED: hypothetical protein XP_002342535 [Homo
sapiens]
Length = 178
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 14 PLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSL-------SSCM 66
PLSS + CRS+ S C +AG + + P P SL SSC+
Sbjct: 103 PLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCL 162
Query: 67 GGPTGS 72
G T S
Sbjct: 163 GCETWS 168
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 27 STKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGPTGSLEPPSVTHTSTLGT 86
S K R G+E+++DS R + + + S SSC +GS S + +S +
Sbjct: 2118 SKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSS 2177
Query: 87 PGRAPDASANSCS 99
+ +S++S S
Sbjct: 2178 SSSSTSSSSSSSS 2190
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 19 TMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVT---PRSLSSCMGGPTGSLEP 75
T+M RS + + S E + SS L PV T +V+ P+S+ S T L P
Sbjct: 9998 TLMSRSPENPSWKS-SLFVEKTSSSSSLLSLPVTTSPSVSSTLPQSIPSSSFSVTSLLTP 10056
Query: 76 PSVTHTSTLGTPGR--APDASANSCSL 100
V T T PG +P+ S S +
Sbjct: 10057 GMVKTTDTSTEPGTSLSPNLSGTSVEI 10083
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 24 SSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTV---TPRSLSSCMGGPTGSLEPPSVTH 80
SST R S+ + LP + +T TP + ++ GG T L PP T
Sbjct: 4218 SSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHT--LSPPPSTT 4275
Query: 81 TSTLGTPGRAPDASANS 97
TS GTP R ++S
Sbjct: 4276 TSPPGTPTRGTTTGSSS 4292
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 24 SSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTV---TPRSLSSCMGGPTGSLEPPSVTH 80
SST R S+ + LP + +T TP + ++ GG T L PP T
Sbjct: 1678 SSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHT--LSPPPSTT 1735
Query: 81 TSTLGTPGRAPDASANS 97
TS GTP R ++S
Sbjct: 1736 TSPPGTPTRGTTTGSSS 1752
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 41 ADSSRKLPRPVLTMNTVTPRSLSSCMGGPTGSLEPPSVTHTSTLGTPGRAPDASANS 97
A SRK RP LT + R + GP G+ P T+T G P +P + S
Sbjct: 463 ATCSRKRGRPPLTPSQRAERE--AARAGPEGTSPPTPTPSTATGGPPEDSPTVAPKS 517
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 30 CRC----FSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGPTGSLEPPSVTHTSTLG 85
C C + E A S R+L PV TPR GP + PP ++ S
Sbjct: 1275 CHCAQPFWGPRCERVARSCRELQCPVGVPCQQTPR-------GPRCAC-PPGLSGPSCRS 1326
Query: 86 TPGRAPDASANSCSLA 101
PG P AS SC+ A
Sbjct: 1327 FPGSPPGASNASCAAA 1342
>gi|239751037 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 32 CFSAGAE---AAADSSRKLPRPVLT----MNTVTPRSLSSCMGGPTGS-----LEPPSVT 79
C S G + + A SS P P + + T P SL GGPTGS EP +
Sbjct: 67 CASTGRQVGVSGAGSSPPGPAPCVKCSAWVGTCFPLSLLQAAGGPTGSPNGFCPEPWAPD 126
Query: 80 HTSTL 84
H STL
Sbjct: 127 HASTL 131
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 36 GAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGP----------TGSLEPPSVT-HTSTL 84
GA A SSR P P+ +TP C G P +G PP ++ H +
Sbjct: 283 GAGQGASSSRPDPEPLEEGTRLTPGPGPQCPGPPGLPAQARATHSGGETPPRISIHIQEM 342
Query: 85 GTPG 88
TPG
Sbjct: 343 DTPG 346
>gi|45007007 2'-5'oligoadenylate synthetase 3 [Homo sapiens]
Length = 1087
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 13 EPLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLS---SCMG-G 68
+P+ SW + + C G D ++K P ++N V PR+ S SC G
Sbjct: 335 DPVQSW----KGPGLPRAGCSGLGHPIQLDPNQKTPENSKSLNAVYPRAGSKPPSCPAPG 390
Query: 69 PTGSLE-PPSVTHTSTLGTPGRAPDAS 94
PTG+ PSV PG A D S
Sbjct: 391 PTGAASIVPSV--------PGMALDLS 409
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 54 MNTVTPRSLSSCMGGPTGSLEPPSVTHTST 83
+N+ +P+SLSS +G G L PP + + ++
Sbjct: 344 VNSCSPQSLSSVLGSGFGELAPPKMANITS 373
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 2 ELLRPHRVCGMEPL---SSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVT 58
++ RPH++C + + +S +C S++ T+ + A + LP+PV T + T
Sbjct: 177 DICRPHQICNVVAIPGNASMDAVCTSTSPTR---------SMAPGAVHLPQPVSTRSQHT 227
Query: 59 PRSLSSCMGGPTGSLEPPSVTHTSTLGTPGRAPDASANSCSLA 101
PT EP + TS L G +P A ++ A
Sbjct: 228 Q---------PTP--EPSTAPSTSFLLPMGPSPPAEGSTGDFA 259
>gi|169207534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 31 RCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMG----GPTGSLEPPSVTHTSTLGT 86
R S GA + + PRP P + +S + GP + +PP V L
Sbjct: 7 RIRSFGAAWPEEKADLSPRPRFLATPRVPGTPTSQLPPRIPGPPTTRQPPRVPDHLHLSC 66
Query: 87 PGRAPDASANSCSLA 101
P +PD SC LA
Sbjct: 67 PRASPDRPRPSCPLA 81
>gi|169207799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 31 RCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMG----GPTGSLEPPSVTHTSTLGT 86
R S GA + + PRP P + +S + GP + +PP V L
Sbjct: 7 RIRSFGAAWPEEKADLSPRPRFLATPRVPGTPTSQLPPRIPGPPTTRQPPRVPDHLHLSC 66
Query: 87 PGRAPDASANSCSLA 101
P +PD SC LA
Sbjct: 67 PRASPDRPRPSCPLA 81
>gi|16975496 cortactin binding protein 2 [Homo sapiens]
Length = 1663
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 39 AAADSSRKLPRPVLTMNTVTPRSLSSCMGGPTGSL 73
A +DSS +P + +++ P S SSC G + SL
Sbjct: 650 ACSDSSLVIPTTIAFCSSINPVSASSCRPGASDSL 684
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 75 PPSVTHTSTLGTPGRAPD 92
PP TH++ LG P R PD
Sbjct: 252 PPPPTHSTQLGAPSRKPD 269
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 10 CGMEPLSSWTMMCRSS-TSTKCRCFSAGAEAAADS--SRKLPRPVLTMNTVTPRSLSSCM 66
C SS + C+SS TS+ C C S+G + + S S + + T + SC
Sbjct: 261 CQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSSTSCSCQ 320
Query: 67 GGPTGSLEPPSVTHTSTLGTPGRAPDASANSCS 99
T S + TS+ + S+ SCS
Sbjct: 321 SSRTSSTCSCQSSGTSSTSCICWSSGTSSTSCS 353
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 10 CGMEPLSSWTMMCRSS-TSTKCRCFSAGAEAAADSSR--KLPRPVLTMNTVTPRSLSSCM 66
C SS + C+SS TS+ C C S+G + + S + + ++ T + SC
Sbjct: 65 CQSSGTSSTSCSCQSSETSSTCSCQSSGTSSTSCSWQFSRTSSTCCCQSSRTSSTSCSCQ 124
Query: 67 GGPTGSLEPPSVTHTSTLGTPGRAPDASANSCS 99
T S + ++ + S+ SCS
Sbjct: 125 SSRTSSTSCSCQSSRTSSTCSCQTSRTSSTSCS 157
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 10 CGMEPLSSWTMMCRSS-TSTKCRCFSAGAEAAADS--SRKLPRPVLTMNTVTPRSLSSCM 66
C SS + C+SS TS+ C C S+G + + S S + ++ T + SC
Sbjct: 215 CQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSRTSSTCSCQSSGTSSTSCSCQ 274
Query: 67 GGPTGS 72
T S
Sbjct: 275 SSGTSS 280
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 16 SSWTMMCRSS--TSTKCRCFSAGAEAAADSSR 45
+S T C+SS +ST C C+S+G + + S R
Sbjct: 324 TSSTCSCQSSGTSSTSCICWSSGTSSTSCSGR 355
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 10 CGMEPLSSWTMMCRSS-TSTKCRCFSAGAEAAADS--SRKLPRPVLTMNTVTPRSLSSCM 66
C SS + C+SS TS+ C C S+G + + S S + + T + SC
Sbjct: 261 CQSSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSSTSCSCQ 320
Query: 67 GGPTGSLEPPSVTHTSTLGTPGRAPDASANSCS 99
T S + TS+ + S+ SCS
Sbjct: 321 SSRTSSTCSCQSSGTSSTSCICWSSGTSSTSCS 353
Score = 26.6 bits (57), Expect = 4.5
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 10 CGMEPLSSWTMMCRSS-TSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLS---SC 65
C SS + C+SS TS+ C C S+G ++ S + R T + R+ S SC
Sbjct: 65 CQSSGTSSTSCSCQSSETSSTCSCQSSGT-SSTSCSWQFSRTSSTCRCQSSRTSSTSCSC 123
Query: 66 MGGPTGSLEPPSVTHTSTLGTPGRAPDASANSCS 99
T S + ++ + S+ SCS
Sbjct: 124 QSSRTSSTSCSCQSSRTSSTCSCQTSRTSSTSCS 157
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 10 CGMEPLSSWTMMCRSS-TSTKCRCFSAGAEAAADS--SRKLPRPVLTMNTVTPRSLSSCM 66
C SS + C+SS TS+ C C S+G + + S S + ++ T + SC
Sbjct: 215 CQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSRTSSTCSCQSSRTSSTSCSCQ 274
Query: 67 GGPTGS 72
T S
Sbjct: 275 SSGTSS 280
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 16 SSWTMMCRSS--TSTKCRCFSAGAEAAADSSR 45
+S T C+SS +ST C C+S+G + + S R
Sbjct: 324 TSSTCSCQSSGTSSTSCICWSSGTSSTSCSGR 355
>gi|93102367 ral guanine nucleotide dissociation stimulator-like 1
[Homo sapiens]
Length = 803
Score = 27.3 bits (59), Expect = 2.7
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 18 WTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSL----SSCMGGPTGSL 73
W + T + S EAAAD+S P+P +M V SL S + PT +
Sbjct: 514 WFQRQQLLTEEESYALSCEIEAAADASTTSPKPRKSM--VKRLSLLFLGSDMITSPTPTK 571
Query: 74 EPPSVTHTSTLGTPGRAPDA-SANSC 98
E P T + G+ G + D+ S +SC
Sbjct: 572 EQPKSTAS---GSSGESMDSVSVSSC 594
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.124 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,797,570
Number of Sequences: 37866
Number of extensions: 206679
Number of successful extensions: 1061
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 177
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.