Guide to the Human Genome
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Name: LOC283486 Sequence: fasta or formatted (123aa) NCBI GI: 239750579
Description:

PREDICTED: hypothetical protein LOC283486

Not currently referenced in the text

Other entries for this name:
alt mRNA {123aa} PREDICTED: hypothetical protein LOC283486
alt prot {123aa} PREDICTED: hypothetical protein LOC283486
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         16           1
 C cysteine            6.5          8           1
 D aspartate           0.0          0           0
 E glutamate           5.7          7           2
 F phenylalanine       0.8          1           1
 G glycine            16.3         20           2
 H histidine           3.3          4           1
 I isoleucine          0.8          1           1
 K lysine              1.6          2           1
 L leucine             6.5          8           1
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline             9.8         12           1
 Q glutamine           3.3          4           1
 R arginine            9.8         12           1
 S serine              8.1         10           2
 T threonine           4.1          5           1
 V valine              5.7          7           1
 W tryptophan          4.1          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC283486 
LOC283486             1.000   PREDICTED: hypothetical protein LOC283486 
LOC283486             0.992   PREDICTED: hypothetical protein LOC283486 
LOC100292576          0.033   PREDICTED: hypothetical protein 
LOC100288860          0.033   PREDICTED: hypothetical protein 
LOC100288860          0.033   PREDICTED: hypothetical protein XP_002343712 
CECR6                 0.028   cat eye syndrome chromosome region, candidate 6 isof...
LOC100293375          0.028   PREDICTED: hypothetical protein 
LOC100294414          0.028   PREDICTED: hypothetical protein 
LOC100292673          0.024   PREDICTED: hypothetical protein 
LOC100291194          0.024   PREDICTED: hypothetical protein XP_002348117 
LOC100288065          0.024   PREDICTED: hypothetical protein XP_002344233 
PHF1                  0.024   PHD finger protein 1 isoform a 
DIDO1                 0.024   death inducer-obliterator 1 isoform c 
SNRPB                 0.020   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.020   small nuclear ribonucleoprotein polypeptide B/B' isof...
SNRPN                 0.020   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.020   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.020   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.020   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.020   small nuclear ribonucleoprotein polypeptide N 
C3orf32               0.020   hypothetical protein LOC51066 
LOC100291317          0.016   PREDICTED: hypothetical protein XP_002346735 
PRR12                 0.016   proline rich 12 
PCSK9                 0.016   proprotein convertase subtilisin/kexin type 9 prepro...
LOC100291076          0.016   PREDICTED: hypothetical protein XP_002347846 
DLGAP3                0.012   discs, large (Drosophila) homolog-associated protei...
FBN3                  0.012   fibrillin 3 precursor 
PPFIA3                0.012   PTPRF interacting protein alpha 3 
SPOCD1                0.012   SPOC domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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