Guide to the Human Genome
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Name: LOC100294414 Sequence: fasta or formatted (101aa) NCBI GI: 239747201
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9          9           3
 C cysteine            5.9          6           1
 D aspartate           2.0          2           1
 E glutamate           4.0          4           1
 F phenylalanine       1.0          1           1
 G glycine             6.9          7           2
 H histidine           2.0          2           1
 I isoleucine          0.0          0           0
 K lysine              2.0          2           1
 L leucine             8.9          9           2
 M methionine          5.9          6           2
 N asparagine          2.0          2           1
 P proline             9.9         10           2
 Q glutamine           0.0          0           0
 R arginine            7.9          8           1
 S serine             16.8         17           2
 T threonine          10.9         11           1
 V valine              4.0          4           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131706          0.038   PREDICTED: hypothetical protein 
LOC283486             0.038   PREDICTED: hypothetical protein LOC283486 
LOC100131706          0.038   PREDICTED: hypothetical protein 
LOC283486             0.038   PREDICTED: hypothetical protein LOC283486 
LOC100131706          0.038   PREDICTED: hypothetical protein 
LOC283486             0.038   PREDICTED: hypothetical protein LOC283486 
LOC440795             0.027   PREDICTED: similar to hCG1646661 
KDM4D                 0.027   jumonji domain containing 2D 
LOC100292332          0.022   PREDICTED: hypothetical protein 
LOC100290495          0.022   PREDICTED: hypothetical protein XP_002346721 
LOC100287671          0.022   PREDICTED: hypothetical protein XP_002342535 
CHD9                  0.022   chromodomain helicase DNA binding protein 9 
MUC16                 0.016   mucin 16 
MUC2                  0.016   mucin 2 precursor 
LOC100294420          0.016   PREDICTED: similar to mucin 2 
MLL4                  0.016   myeloid/lymphoid or mixed-lineage leukemia 4 
NOTCH3                0.016   Notch homolog 3 
LOC728804             0.016   PREDICTED: hypothetical protein 
MYLK3                 0.016   myosin light chain kinase 3 
OAS3                  0.016   2'-5'oligoadenylate synthetase 3 
UBAP2                 0.016   ubiquitin associated protein 2 
TNFRSF1B              0.016   tumor necrosis factor receptor 2 precursor 
LOC100131880          0.016   PREDICTED: hypothetical protein 
LOC100131880          0.016   PREDICTED: hypothetical protein 
CTTNBP2               0.016   cortactin binding protein 2 
MEF2D                 0.011   myocyte enhancer factor 2D 
LOC729815             0.011   PREDICTED: hypothetical protein 
LOC729815             0.011   PREDICTED: hypothetical protein 
RGL1                  0.011   ral guanine nucleotide dissociation stimulator-like ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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