Guide to the Human Genome
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Name: C17orf97 Sequence: fasta or formatted (433aa) NCBI GI: 117320550
Description:

hypothetical protein LOC400566

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         33           2
 C cysteine            0.9          4           1
 D aspartate           6.9         30           2
 E glutamate           8.5         37           4
 F phenylalanine       4.6         20           1
 G glycine             9.9         43           2
 H histidine           5.5         24           1
 I isoleucine          2.3         10           1
 K lysine             10.6         46           4
 L leucine             9.9         43           2
 M methionine          0.5          2           1
 N asparagine          2.3         10           1
 P proline            12.2         53           2
 Q glutamine           1.4          6           1
 R arginine            5.8         25           2
 S serine              5.5         24           3
 T threonine           2.8         12           1
 V valine              1.4          6           1
 W tryptophan          0.2          1           1
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400566 
TRO                   0.019   trophinin isoform 5 
LMTK3                 0.019   lemur tyrosine kinase 3 
COL4A2                0.017   alpha 2 type IV collagen preproprotein 
LOC728888             0.017   PREDICTED: similar to acyl-CoA synthetase medium-ch...
COL5A2                0.016   alpha 2 type V collagen preproprotein 
COL5A3                0.015   collagen, type V, alpha 3 preproprotein 
HIST1H1D              0.014   histone cluster 1, H1d 
LOC100294067          0.014   PREDICTED: similar to rCG47812 
NMT2                  0.014   N-myristoyltransferase 2 
WBP4                  0.014   WW domain-containing binding protein 4 
PLEKHG3               0.014   pleckstrin homology domain containing, family G, mem...
AP3B2                 0.014   adaptor-related protein complex 3, beta 2 subunit [H...
CCBE1                 0.014   collagen and calcium binding EGF domains 1 
C1QTNF2               0.014   C1q and tumor necrosis factor related protein 2 [Hom...
ZNF358                0.014   zinc finger protein 358 
FLJ37078              0.012   hypothetical protein LOC222183 
COL12A1               0.012   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.012   collagen, type XII, alpha 1 long isoform precursor [...
COL2A1                0.011   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.011   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A2                0.011   alpha 2 type I collagen 
COL5A1                0.011   alpha 1 type V collagen preproprotein 
SCN8A                 0.011   sodium channel, voltage gated, type VIII, alpha [Homo...
NEFH                  0.011   neurofilament, heavy polypeptide 200kDa 
COL19A1               0.011   alpha 1 type XIX collagen precursor 
ARL6IP4               0.011   SRp25 nuclear protein isoform 3 
ACRV1                 0.011   acrosomal vesicle protein 1 isoform a precursor [Homo...
MAP7D1                0.011   MAP7 domain containing 1 
CIR1                  0.011   CBF1 interacting corepressor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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