Guide to the Human Genome
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Name: AARSD1 Sequence: fasta or formatted (161aa) NCBI GI: 217416407
Description:

alanyl-tRNA synthetase domain containing 1 isoform 4

Referenced in:

Heat-Shock Proteins and Chaperonins

Other entries for this name:
alt prot [525aa] alanyl-tRNA synthetase domain containing 1 isoform 2
alt prot [586aa] alanyl-tRNA synthetase domain containing 1 isoform 1
alt prot [166aa] alanyl-tRNA synthetase domain containing 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         15           2
 C cysteine            3.1          5           1
 D aspartate          11.2         18           3
 E glutamate           6.8         11           2
 F phenylalanine       2.5          4           1
 G glycine             3.7          6           1
 H histidine           2.5          4           1
 I isoleucine          3.1          5           1
 K lysine              8.7         14           2
 L leucine             6.2         10           2
 M methionine          2.5          4           1
 N asparagine          4.3          7           1
 P proline             6.2         10           3
 Q glutamine           1.2          2           1
 R arginine            6.2         10           2
 S serine              8.7         14           2
 T threonine           2.5          4           1
 V valine              5.0          8           1
 W tryptophan          4.3          7           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alanyl-tRNA synthetase domain containing 1 isoform ... 
AARSD1                0.869   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.676   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.611   alanyl-tRNA synthetase domain containing 1 isoform 2...
PTGES3                0.221   prostaglandin-E synthase 3 
LOC100291405          0.056   PREDICTED: hypothetical protein XP_002347581 
PTPLAD1               0.056   protein tyrosine phosphatase-like A domain containi...
STRN4                 0.022   zinedin isoform 2 
STRN4                 0.022   zinedin isoform 1 
WDR8                  0.019   WD repeat domain 8 
LAS1L                 0.016   LAS1-like 
TOP2B                 0.012   DNA topoisomerase II, beta isozyme 
C5orf4                0.009   hypothetical protein LOC10826 isoform 1 
NOLC1                 0.009   nucleolar and coiled-body phosphoprotein 1 
KSR1                  0.009   kinase suppressor of ras 
MTUS1                 0.006   mitochondrial tumor suppressor 1 isoform 1 
LOC100133923          0.006   PREDICTED: similar to UPF0634 protein C 
ANKRD36               0.006   PREDICTED: ankyrin repeat domain 36 
CGNL1                 0.006   cingulin-like 1 
NOTCH2NL              0.006   Notch homolog 2 N-terminal like protein 
CCHCR1                0.006   coiled-coil alpha-helical rod protein 1 isoform 1 [...
CCHCR1                0.006   coiled-coil alpha-helical rod protein 1 isoform 2 [...
CCHCR1                0.006   coiled-coil alpha-helical rod protein 1 isoform 3 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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