Guide to the Human Genome
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Name: AARSD1 Sequence: fasta or formatted (525aa) NCBI GI: 13376886
Description:

alanyl-tRNA synthetase domain containing 1 isoform 2

Referenced in:

Heat-Shock Proteins and Chaperonins

Other entries for this name:
alt prot [586aa] alanyl-tRNA synthetase domain containing 1 isoform 1
alt prot [166aa] alanyl-tRNA synthetase domain containing 1 isoform 3
alt prot [161aa] alanyl-tRNA synthetase domain containing 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         30           2
 C cysteine            1.5          8           2
 D aspartate           7.0         37           2
 E glutamate           8.8         46           2
 F phenylalanine       3.2         17           1
 G glycine             7.2         38           3
 H histidine           3.0         16           1
 I isoleucine          4.4         23           2
 K lysine              6.9         36           2
 L leucine             9.7         51           2
 M methionine          1.9         10           1
 N asparagine          4.0         21           2
 P proline             3.6         19           3
 Q glutamine           3.8         20           2
 R arginine            5.9         31           2
 S serine              6.7         35           2
 T threonine           5.5         29           3
 V valine              8.6         45           2
 W tryptophan          1.7          9           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alanyl-tRNA synthetase domain containing 1 isoform 2... 
AARSD1                1.000   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.190   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.153   alanyl-tRNA synthetase domain containing 1 isoform ...
PTGES3                0.081   prostaglandin-E synthase 3 
AARS2                 0.036   alanyl-tRNA synthetase 2, mitochondrial 
AARS                  0.023   alanyl-tRNA synthetase 
LOC100291405          0.017   PREDICTED: hypothetical protein XP_002347581 
PTPLAD1               0.017   protein tyrosine phosphatase-like A domain containi...
ANKK1                 0.007   ankyrin repeat and kinase domain containing 1 
RSPH4A                0.007   radial spoke head 4 homolog A isoform 2 
RSPH4A                0.007   radial spoke head 4 homolog A isoform 1 
HSPA13                0.004   heat shock protein 70kDa family member 13 precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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