Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AARSD1 Sequence: fasta or formatted (166aa) NCBI GI: 217416405
Description:

alanyl-tRNA synthetase domain containing 1 isoform 3

Referenced in:

Heat-Shock Proteins and Chaperonins

Other entries for this name:
alt prot [525aa] alanyl-tRNA synthetase domain containing 1 isoform 2
alt prot [586aa] alanyl-tRNA synthetase domain containing 1 isoform 1
alt prot [161aa] alanyl-tRNA synthetase domain containing 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         15           2
 C cysteine            3.0          5           1
 D aspartate          11.4         19           3
 E glutamate           7.2         12           2
 F phenylalanine       3.6          6           1
 G glycine             3.6          6           1
 H histidine           4.2          7           1
 I isoleucine          3.0          5           1
 K lysine              4.8          8           2
 L leucine             6.6         11           2
 M methionine          3.0          5           1
 N asparagine          4.2          7           1
 P proline             6.0         10           3
 Q glutamine           1.2          2           1
 R arginine            6.0         10           2
 S serine              7.2         12           1
 T threonine           2.4          4           1
 V valine              6.6         11           1
 W tryptophan          3.6          6           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alanyl-tRNA synthetase domain containing 1 isoform ... 
AARSD1                0.877   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.650   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.473   alanyl-tRNA synthetase domain containing 1 isoform 2...
PTGES3                0.195   prostaglandin-E synthase 3 
STRN4                 0.021   zinedin isoform 2 
STRN4                 0.021   zinedin isoform 1 
LOC100291405          0.018   PREDICTED: hypothetical protein XP_002347581 
PTPLAD1               0.018   protein tyrosine phosphatase-like A domain containi...
ARID4B                0.018   AT rich interactive domain 4B isoform 2 
ARID4B                0.018   AT rich interactive domain 4B isoform 1 
C5orf4                0.018   hypothetical protein LOC10826 isoform 1 
TOP2B                 0.012   DNA topoisomerase II, beta isozyme 
KSR1                  0.009   kinase suppressor of ras 
LOC100133923          0.006   PREDICTED: similar to UPF0634 protein C 
ANKRD36               0.006   PREDICTED: ankyrin repeat domain 36 
MTUS1                 0.006   mitochondrial tumor suppressor 1 isoform 1 
CGNL1                 0.006   cingulin-like 1 
NOTCH2NL              0.006   Notch homolog 2 N-terminal like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press