Guide to the Human Genome
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Name: PTGES3 Sequence: fasta or formatted (160aa) NCBI GI: 23308579
Description:

prostaglandin-E synthase 3

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes
Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          4           1
 C cysteine            3.1          5           2
 D aspartate          16.9         27           3
 E glutamate           8.1         13           1
 F phenylalanine       5.6          9           1
 G glycine             4.4          7           2
 H histidine           1.9          3           1
 I isoleucine          2.5          4           1
 K lysine              7.5         12           1
 L leucine             6.9         11           1
 M methionine          3.8          6           2
 N asparagine          6.9         11           2
 P proline             3.1          5           1
 Q glutamine           1.9          3           1
 R arginine            5.0          8           2
 S serine              9.4         15           1
 T threonine           1.9          3           1
 V valine              4.4          7           1
 W tryptophan          3.1          5           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostaglandin-E synthase 3 
AARSD1                0.319   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.263   alanyl-tRNA synthetase domain containing 1 isoform 2...
AARSD1                0.222   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.203   alanyl-tRNA synthetase domain containing 1 isoform ...
LOC100292911          0.150   PREDICTED: hypothetical protein 
LOC100289608          0.150   PREDICTED: hypothetical protein 
LOC100289608          0.150   PREDICTED: hypothetical protein XP_002343073 
LOC100291405          0.044   PREDICTED: hypothetical protein XP_002347581 
PTPLAD1               0.044   protein tyrosine phosphatase-like A domain containi...
SPOCK3                0.028   testican 3 isoform 1 
SPOCK3                0.028   testican 3 isoform 2 
CEBPZ                 0.025   CCAAT/enhancer binding protein zeta 
UBTF                  0.025   upstream binding transcription factor, RNA polymera...
UBTF                  0.025   upstream binding transcription factor, RNA polymera...
UBTF                  0.025   upstream binding transcription factor, RNA polymerase...
NRK                   0.025   Nik related kinase 
CAND1                 0.022   TIP120 protein 
ANP32E                0.022   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.022   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
LEO1                  0.022   Leo1, Paf1/RNA polymerase II complex component, homo...
ANP32E                0.022   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32B                0.019   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
AATF                  0.019   apoptosis antagonizing transcription factor 
HIVEP2                0.019   human immunodeficiency virus type I enhancer bindin...
TAF7L                 0.016   TATA box binding protein-associated factor, RNA poly...
MLLT3                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithor...
EFTUD2                0.016   elongation factor Tu GTP binding domain containing ...
SUPT6H                0.016   suppressor of Ty 6 homolog 
MTERFD2               0.016   MTERF domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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