Guide to the Human Genome
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Name: PIGU Sequence: fasta or formatted (435aa) NCBI GI: 17998700
Description:

phosphatidylinositol glycan anchor biosynthesis, class U

Referenced in:

GPI Anchoring

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         37           2
 C cysteine            1.4          6           1
 D aspartate           2.5         11           1
 E glutamate           3.4         15           1
 F phenylalanine      10.3         45           2
 G glycine             3.0         13           1
 H histidine           1.6          7           1
 I isoleucine          8.7         38           3
 K lysine              3.7         16           2
 L leucine            14.9         65           3
 M methionine          2.5         11           2
 N asparagine          2.5         11           2
 P proline             4.4         19           1
 Q glutamine           2.1          9           1
 R arginine            2.5         11           2
 S serine              6.2         27           2
 T threonine           4.8         21           2
 V valine              8.7         38           2
 W tryptophan          1.8          8           1
 Y tyrosine            6.2         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylinositol glycan anchor biosynthesis, cla... 
PIGM                  0.029   phosphatidylinositol glycan anchor biosynthesis, cla...
TM9SF3                0.010   transmembrane 9 superfamily member 3 
LEPROTL1              0.008   leptin receptor overlapping transcript-like 1 isofo...
LEPROTL1              0.008   leptin receptor overlapping transcript-like 1 isofo...
CCR2                  0.006   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.006   chemokine (C-C motif) receptor 2 isoform A 
LCLAT1                0.006   lysocardiolipin acyltransferase 1 isoform 1 
LCLAT1                0.006   lysocardiolipin acyltransferase 1 isoform 2 
KCNK18                0.006   potassium channel, subfamily K, member 18 
GDPD4                 0.006   glycerophosphodiester phosphodiesterase domain conta...
ND5                   0.006   NADH dehydrogenase subunit 5 
ND5                   0.006   NADH dehydrogenase subunit 5 
PCDHGC3               0.005   protocadherin gamma subfamily C, 3 isoform 2 precurs...
PCDHGC3               0.005   protocadherin gamma subfamily C, 3 isoform 1 precurs...
ERMP1                 0.005   aminopeptidase Fxna 
PTPLAD1               0.005   protein tyrosine phosphatase-like A domain containi...
ST3GAL3               0.005   sialyltransferase 6 isoform f 
ST3GAL3               0.005   sialyltransferase 6 isoform e 
ST3GAL3               0.005   sialyltransferase 6 isoform d 
ST3GAL3               0.005   sialyltransferase 6 isoform j 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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