Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCDC62 Sequence: fasta or formatted (682aa) NCBI GI: 30348972
Description:

coiled-coil domain containing 62 isoform a

Referenced in:

Coiled-Coil Proteins
Testes and Sperm

Other entries for this name:
alt prot [684aa] coiled-coil domain containing 62 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         32           2
 C cysteine            3.2         22           2
 D aspartate           5.6         38           2
 E glutamate          10.7         73           2
 F phenylalanine       1.9         13           1
 G glycine             3.1         21           2
 H histidine           2.8         19           1
 I isoleucine          5.3         36           2
 K lysine             10.3         70           2
 L leucine            10.9         74           2
 M methionine          2.5         17           1
 N asparagine          4.8         33           2
 P proline             2.8         19           2
 Q glutamine           7.2         49           3
 R arginine            3.8         26           1
 S serine             10.0         68           3
 T threonine           5.4         37           2
 V valine              3.8         26           1
 W tryptophan          0.6          4           1
 Y tyrosine            0.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 62 isoform a 
CCDC62                0.977   coiled-coil domain containing 62 isoform b 
MYH4                  0.041   myosin, heavy polypeptide 4, skeletal muscle 
CENPE                 0.038   centromere protein E 
MYH8                  0.037   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
EEA1                  0.036   early endosome antigen 1, 162kD 
MYH2                  0.036   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.036   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.035   myosin, heavy chain 1, skeletal muscle, adult [Homo...
KIAA1598              0.034   shootin1 isoform a 
KIAA1598              0.034   shootin1 isoform b 
MYH7                  0.033   myosin, heavy chain 7, cardiac muscle, beta 
TSGA10                0.033   testis specific, 10 
TSGA10                0.033   testis specific, 10 
MYH13                 0.033   myosin, heavy polypeptide 13, skeletal muscle [Homo...
HMMR                  0.032   hyaluronan-mediated motility receptor isoform b [Ho...
CIT                   0.032   citron 
HMMR                  0.032   hyaluronan-mediated motility receptor isoform a [Ho...
MYH9                  0.032   myosin, heavy polypeptide 9, non-muscle 
FILIP1L               0.032   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.032   filamin A interacting protein 1-like isoform 1 [Hom...
MYO18A                0.032   myosin 18A isoform b 
MYO18A                0.032   myosin 18A isoform a 
FILIP1                0.031   filamin A interacting protein 1 
CLIP1                 0.030   restin isoform b 
CLIP1                 0.030   restin isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press