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Search of human proteins with 239746826
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 439 e-123
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] 439 e-123
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 260 5e-70
gi|4504425 high-mobility group box 1 [Homo sapiens] 196 1e-50
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 191 4e-49
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 179 1e-45
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 179 1e-45
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 179 1e-45
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 177 5e-45
gi|194688135 high-mobility group box 2 [Homo sapiens] 154 4e-38
gi|194688133 high-mobility group box 2 [Homo sapiens] 154 4e-38
gi|11321591 high-mobility group box 2 [Homo sapiens] 154 4e-38
gi|71143137 high-mobility group box 3 [Homo sapiens] 129 2e-30
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 128 4e-30
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 128 4e-30
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 123 1e-28
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 123 1e-28
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 123 1e-28
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 120 7e-28
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 119 1e-27
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 119 1e-27
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 119 1e-27
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 111 4e-25
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 111 4e-25
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 111 4e-25
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 74 1e-13
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 72 4e-13
gi|57232748 HMG2 like isoform 2 [Homo sapiens] 62 3e-10
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 58 7e-09
gi|226246533 TOX high mobility group box family member 3 isoform... 57 1e-08
>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 439 bits (1128), Expect = e-123
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MQSLCKLPGRSTRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFED 60
MQSLCKLPGRSTRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFED
Sbjct: 1 MQSLCKLPGRSTRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFED 60
Query: 61 PNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLK 120
PNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLK
Sbjct: 61 PNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLK 120
Query: 121 EKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDH 180
EKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDH
Sbjct: 121 EKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDH 180
Query: 181 DFLKIPKNKDAELRIWSYNRGPSSGLLDICAYPK 214
DFLKIPKNKDAELRIWSYNRGPSSGLLDICAYPK
Sbjct: 181 DFLKIPKNKDAELRIWSYNRGPSSGLLDICAYPK 214
>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 439 bits (1128), Expect = e-123
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MQSLCKLPGRSTRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFED 60
MQSLCKLPGRSTRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFED
Sbjct: 1 MQSLCKLPGRSTRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFED 60
Query: 61 PNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLK 120
PNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLK
Sbjct: 61 PNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLK 120
Query: 121 EKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDH 180
EKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDH
Sbjct: 121 EKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDH 180
Query: 181 DFLKIPKNKDAELRIWSYNRGPSSGLLDICAYPK 214
DFLKIPKNKDAELRIWSYNRGPSSGLLDICAYPK
Sbjct: 181 DFLKIPKNKDAELRIWSYNRGPSSGLLDICAYPK 214
>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 227
Score = 260 bits (665), Expect = 5e-70
Identities = 133/154 (86%), Positives = 135/154 (87%), Gaps = 19/154 (12%)
Query: 13 RSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFF 72
+SSTQMLQSTSQSFLRSAQR AETKMKFEDPNAPKSPPLAFF
Sbjct: 59 KSSTQMLQSTSQSFLRSAQR-------------------AETKMKFEDPNAPKSPPLAFF 99
Query: 73 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG 132
MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG
Sbjct: 100 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG 159
Query: 133 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKI 166
KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKK+
Sbjct: 160 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKM 193
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 196 bits (498), Expect = 1e-50
Identities = 97/125 (77%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D A YEREMK YIPPK ETK KF+DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
VAKKLGEMWN A DDK PYEKKA KLKEKYEKDIAA+ KGKPDAAKKG +KAEK KKK
Sbjct: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
Query: 153 KEEDK 157
KEE++
Sbjct: 185 KEEEE 189
Score = 36.6 bits (83), Expect = 0.016
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 115
DP P K AFF+ + + K K+HP S+ S+ +KK E W ++ +K +E
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 116 AVKLKEKYEKDIAAF 130
A K +YE+++ +
Sbjct: 64 AKADKARYEREMKTY 78
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 191 bits (485), Expect = 4e-49
Identities = 94/125 (75%), Positives = 102/125 (81%), Gaps = 1/125 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D HYER+MK YIPPK ETK KF+DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 65 KADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGD 124
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
VAKKLGEMWN A DDK P EKKA KLKEKYEKDIAA+ KGKP+AAKKG +KAEK KKK
Sbjct: 125 VAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKK 184
Query: 153 KEEDK 157
KEE++
Sbjct: 185 KEEEE 189
Score = 29.6 bits (65), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 115
DP P K AFF+ + + K K+H S+ S+ + K E W ++ +K +E
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHK-KKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDM 63
Query: 116 AVKLKEKYEKDIAAF 130
A K YE+ + +
Sbjct: 64 AKADKTHYERQMKTY 78
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 179 bits (455), Expect = 1e-45
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D AHY+REMK YIPPK ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS D
Sbjct: 201 KADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGD 260
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
VAKKLGEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKK
Sbjct: 261 VAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKK 320
Query: 153 KEEDK 157
KEE++
Sbjct: 321 KEEEE 325
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 179 bits (455), Expect = 1e-45
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D AHY+REMK YIPPK ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS D
Sbjct: 201 KADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGD 260
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
VAKKLGEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKK
Sbjct: 261 VAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKK 320
Query: 153 KEEDK 157
KEE++
Sbjct: 321 KEEEE 325
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 179 bits (455), Expect = 1e-45
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D AHY+REMK YIPPK ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS D
Sbjct: 201 KADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGD 260
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
VAKKLGEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKK
Sbjct: 261 VAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKK 320
Query: 153 KEEDK 157
KEE++
Sbjct: 321 KEEEE 325
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 177 bits (450), Expect = 5e-45
Identities = 89/125 (71%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D AHYEREMK YIPPK E K KF+DPNAPK PPLAFF+F SE PKIK EHPGLSI D
Sbjct: 739 KADKAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDD 798
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
V KKL MWN A DK YEKKA KLKEKY+KDIAA+ KGKP++AKK +KAEK KKK
Sbjct: 799 VVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKK 858
Query: 153 KEEDK 157
KEE++
Sbjct: 859 KEEEE 863
Score = 28.5 bits (62), Expect = 4.5
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 83 KEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAK 140
K++P S+ S+ KK E W I +K +E A K YE+++ + P K
Sbjct: 703 KKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTY---IPPKGEK 759
Query: 141 KGAIKAEKCKKK 152
K K K+
Sbjct: 760 KKKFKDPNAPKR 771
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 154 bits (390), Expect = 4e-38
Identities = 78/124 (62%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D A Y+REMK Y+PPK + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
AKKLGEMW+ + DK PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 153 KEED 156
E +
Sbjct: 185 NEPE 188
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 115
DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 116 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
A K +Y++++ + P KKG K K+
Sbjct: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 154 bits (390), Expect = 4e-38
Identities = 78/124 (62%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D A Y+REMK Y+PPK + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
AKKLGEMW+ + DK PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 153 KEED 156
E +
Sbjct: 185 NEPE 188
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 115
DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 116 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
A K +Y++++ + P KKG K K+
Sbjct: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 154 bits (390), Expect = 4e-38
Identities = 78/124 (62%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K D A Y+REMK Y+PPK + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
AKKLGEMW+ + DK PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 153 KEED 156
E +
Sbjct: 185 NEPE 188
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 115
DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 116 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
A K +Y++++ + P KKG K K+
Sbjct: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 129 bits (324), Expect = 2e-30
Identities = 72/128 (56%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 31 QRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLS 89
+ K D Y+REMK Y P K K K DPNAPK PP FF+F SE PKIK +PG+S
Sbjct: 62 EMAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS 119
Query: 90 ISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKC 149
I DVAKKLGEMWN + + +K PY KA KLKEKYEKD+A + KGK D AK A A
Sbjct: 120 IGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVAR-- 177
Query: 150 KKKKEEDK 157
KK +EED+
Sbjct: 178 KKVEEEDE 185
Score = 33.9 bits (76), Expect = 0.11
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 60 DPNAPKSPPLAFFMFSS---EDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKA 116
DP PK A+ F E+ K ++ ++ +KK E W ++ +K +++ A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 117 VKLKEKYEKDI----AAFGGKGKPD 137
K +Y++++ A GGK K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 128 bits (321), Expect = 4e-30
Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 4/125 (3%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISD 92
K D HY++E+K Y P K K +DPNAPK PP FF+F SE CPK K +PG+ I D
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKK---KDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGD 121
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
VAKKLGEMW + + +K PY +A KLKEKYEKD+A + KGK D AK A A+K ++
Sbjct: 122 VAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEE 181
Query: 153 KEEDK 157
++ED+
Sbjct: 182 EDEDE 186
Score = 33.9 bits (76), Expect = 0.11
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 60 DPNAPKSPPLAFFMFSS---EDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKA 116
DP PK A+ F E+ K ++ ++ +KK E W +++ +K + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 117 VKLKEKYEKDI----AAFGGKGK-PDAAKK 141
K Y+++I A GGK K P+A K+
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 128 bits (321), Expect = 4e-30
Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 4/125 (3%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISD 92
K D HY++E+K Y P K K +DPNAPK PP FF+F SE CPK K +PG+ I D
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKK---KDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGD 121
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
VAKKLGEMW + + +K PY +A KLKEKYEKD+A + KGK D AK A A+K ++
Sbjct: 122 VAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEE 181
Query: 153 KEEDK 157
++ED+
Sbjct: 182 EDEDE 186
Score = 33.9 bits (76), Expect = 0.11
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 60 DPNAPKSPPLAFFMFSS---EDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKA 116
DP PK A+ F E+ K ++ ++ +KK E W +++ +K + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 117 VKLKEKYEKDI----AAFGGKGK-PDAAKK 141
K Y+++I A GGK K P+A K+
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 123 bits (308), Expect = 1e-28
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 11 STRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLA 70
S + S + +S+ + + K D Y+REMK Y P K K +DPNAPK PP
Sbjct: 42 SKKCSGRWKTMSSKEKFKFGEMAKADEVCYDREMKDYGPAKGGKK---KDPNAPKRPPSG 98
Query: 71 FFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAA 129
FF+F SE PKIK +PG+SI DVAKKLGEMWN + + +K PY KA KLKEKYEKD+
Sbjct: 99 FFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVD 158
Query: 130 FGGKGKPDAAKKGA-IKAEKCKKKKEEDKMRNMKIK 164
KGK AK+ A + +K +++ EED+ K K
Sbjct: 159 CKLKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEK 194
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 123 bits (308), Expect = 1e-28
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 11 STRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLA 70
S + S + +S+ + + K D Y+REMK Y P K K +DPNAPK PP
Sbjct: 42 SKKCSGRWKTMSSKEKFKFGEMAKADEVCYDREMKDYGPAKGGKK---KDPNAPKRPPSG 98
Query: 71 FFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAA 129
FF+F SE PKIK +PG+SI DVAKKLGEMWN + + +K PY KA KLKEKYEKD+
Sbjct: 99 FFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVD 158
Query: 130 FGGKGKPDAAKKGA-IKAEKCKKKKEEDKMRNMKIK 164
KGK AK+ A + +K +++ EED+ K K
Sbjct: 159 CKLKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEK 194
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 123 bits (308), Expect = 1e-28
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 11 STRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLA 70
S + S + +S+ + + K D Y+REMK Y P K K +DPNAPK PP
Sbjct: 42 SKKCSGRWKTMSSKEKFKFGEMAKADEVCYDREMKDYGPAKGGKK---KDPNAPKRPPSG 98
Query: 71 FFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAA 129
FF+F SE PKIK +PG+SI DVAKKLGEMWN + + +K PY KA KLKEKYEKD+
Sbjct: 99 FFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVD 158
Query: 130 FGGKGKPDAAKKGA-IKAEKCKKKKEEDKMRNMKIK 164
KGK AK+ A + +K +++ EED+ K K
Sbjct: 159 CKLKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEK 194
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 120 bits (302), Expect = 7e-28
Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 5/153 (3%)
Query: 6 KLPGRSTRSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPK 65
K P S + S + + + + + K D H +REMK P K K K DP+APK
Sbjct: 16 KSPEFSKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPK 71
Query: 66 SPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYE 124
PP FF+FSSE PKIK +PG+SI DVAKKLGEMWN + + +K PY K KLKEKYE
Sbjct: 72 RPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYE 131
Query: 125 KDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 157
KD+A KGK D +K+ A A K ++++ED+
Sbjct: 132 KDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDE 164
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 119 bits (299), Expect = 1e-27
Identities = 67/128 (52%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 31 QRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLS 89
+ K D H +REMK P K K K DP+APK PP FF+FSSE PKIK +PG+S
Sbjct: 59 EMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGIS 114
Query: 90 ISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKC 149
I DVAKKLGEMWN + + +K PY K KLKEKYEKD+A KGK D +K+ A A K
Sbjct: 115 IGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKK 174
Query: 150 KKKKEEDK 157
++++ED+
Sbjct: 175 VEEEDEDE 182
Score = 33.1 bits (74), Expect = 0.18
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 60 DPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKL 119
DP PK A+ F + K+ ++ ++ +KK E W ++ +K +++ A
Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64
Query: 120 KEKYEKDI--AAFGGKGKPD 137
K ++++ A GGK K D
Sbjct: 65 KVHCDREMKGPAKGGKKKKD 84
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 119 bits (299), Expect = 1e-27
Identities = 67/128 (52%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 31 QRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLS 89
+ K D H +REMK P K K K DP+APK PP FF+FSSE PKIK +PG+S
Sbjct: 59 EMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGIS 114
Query: 90 ISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKC 149
I DVAKKLGEMWN + + +K PY K KLKEKYEKD+A KGK D +K+ A A K
Sbjct: 115 IGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKK 174
Query: 150 KKKKEEDK 157
++++ED+
Sbjct: 175 VEEEDEDE 182
Score = 33.1 bits (74), Expect = 0.18
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 60 DPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKL 119
DP PK A+ F + K+ ++ ++ +KK E W ++ +K +++ A
Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64
Query: 120 KEKYEKDI--AAFGGKGKPD 137
K ++++ A GGK K D
Sbjct: 65 KVHCDREMKGPAKGGKKKKD 84
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 119 bits (299), Expect = 1e-27
Identities = 67/128 (52%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 31 QRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLS 89
+ K D H +REMK P K K K DP+APK PP FF+FSSE PKIK +PG+S
Sbjct: 59 EMAKTDKVHCDREMKG--PAKGGKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGIS 114
Query: 90 ISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKC 149
I DVAKKLGEMWN + + +K PY K KLKEKYEKD+A KGK D +K+ A A K
Sbjct: 115 IGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKK 174
Query: 150 KKKKEEDK 157
++++ED+
Sbjct: 175 VEEEDEDE 182
Score = 33.1 bits (74), Expect = 0.18
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 60 DPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKL 119
DP PK A+ F + K+ ++ ++ +KK E W ++ +K +++ A
Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64
Query: 120 KEKYEKDI--AAFGGKGKPD 137
K ++++ A GGK K D
Sbjct: 65 KVHCDREMKGPAKGGKKKKD 84
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 111 bits (278), Expect = 4e-25
Identities = 67/139 (48%), Positives = 87/139 (62%), Gaps = 7/139 (5%)
Query: 31 QRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLS 89
+ KVD HY++EMK P + K +DPNA K P FF+F SE PKIK +PG+S
Sbjct: 62 EMAKVDKVHYDQEMKDNGPVEGGKK---KDPNALKRPLSGFFLFCSEFHPKIKSTNPGIS 118
Query: 90 ISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAK---KGAIKA 146
I D+AKKLGEMW ++ +K PY KA LKEKYEKD+A + KGK D+AK K A K
Sbjct: 119 IGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKK 178
Query: 147 EKCKKKKEEDKMRNMKIKK 165
K K K++E++ + KK
Sbjct: 179 VKEKDKEDEEEEEEEEEKK 197
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 111 bits (278), Expect = 4e-25
Identities = 67/139 (48%), Positives = 87/139 (62%), Gaps = 7/139 (5%)
Query: 31 QRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLS 89
+ KVD HY++EMK P + K +DPNA K P FF+F SE PKIK +PG+S
Sbjct: 62 EMAKVDKVHYDQEMKDNGPVEGGKK---KDPNALKRPLSGFFLFCSEFHPKIKSTNPGIS 118
Query: 90 ISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAK---KGAIKA 146
I D+AKKLGEMW ++ +K PY KA LKEKYEKD+A + KGK D+AK K A K
Sbjct: 119 IGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKK 178
Query: 147 EKCKKKKEEDKMRNMKIKK 165
K K K++E++ + KK
Sbjct: 179 VKEKDKEDEEEEEEEEEKK 197
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 111 bits (278), Expect = 4e-25
Identities = 67/139 (48%), Positives = 87/139 (62%), Gaps = 7/139 (5%)
Query: 31 QRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLS 89
+ KVD HY++EMK P + K +DPNA K P FF+F SE PKIK +PG+S
Sbjct: 62 EMAKVDKVHYDQEMKDNGPVEGGKK---KDPNALKRPLSGFFLFCSEFHPKIKSTNPGIS 118
Query: 90 ISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAK---KGAIKA 146
I D+AKKLGEMW ++ +K PY KA LKEKYEKD+A + KGK D+AK K A K
Sbjct: 119 IGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKK 178
Query: 147 EKCKKKKEEDKMRNMKIKK 165
K K K++E++ + KK
Sbjct: 179 VKEKDKEDEEEEEEEEEKK 197
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 73.6 bits (179), Expect = 1e-13
Identities = 38/102 (37%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 57 KFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 115
K +DPNAPK P A+ ++ + KIK +HPG+SI+D++KK GE+W ++++ K +++K
Sbjct: 540 KGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRK 599
Query: 116 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 157
A + YEK + + G G+ +++K+ K +K K K E K
Sbjct: 600 AEDARRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVKMEKK 640
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 72.0 bits (175), Expect = 4e-13
Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
K+D A Y+ EM Y+ + + + + DP P+ PP +F +F + ++K E+P S+
Sbjct: 65 KLDKARYQEEMMNYVGKRKKRRKR--DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ 122
Query: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKK 151
VAK G+MW+ + +KHPYE++ L+ KY +++ + + + +A KK + A +C+
Sbjct: 123 VAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRG 180
Query: 152 KK 153
K+
Sbjct: 181 KR 182
Score = 30.8 bits (68), Expect = 0.90
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 88 LSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGK------------ 135
+ + ++K E W I++ +K YE A K +Y++++ + GK K
Sbjct: 36 VGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRR 95
Query: 136 PDAAKKGAIKAEKCKKKKEEDKMRNMKIKKIKFPMYSALTRLGDHDF 182
P ++ + + K+E +++ K M+S T L H +
Sbjct: 96 PPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
>gi|57232748 HMG2 like isoform 2 [Homo sapiens]
Length = 112
Score = 62.4 bits (150), Expect = 3e-10
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 55 KMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDKHPYE 113
K + DP P+ PP +F +F + ++K E+P S+ VAK G+MW+ + +KHPYE
Sbjct: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69
Query: 114 KKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKKKK 153
++ L+ KY +++ + + + +A KK + A +C+ K+
Sbjct: 70 QRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRGKR 108
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 57.8 bits (138), Expect = 7e-09
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 50 PKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDD 108
PK K K +DPN P+ P A+ +F + IK ++P + +V+K + MW+ + E+
Sbjct: 247 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQ 306
Query: 109 KHPYEKKAVKLKEKYEKDIAAF 130
K Y+KK K++Y K +AA+
Sbjct: 307 KQVYKKKTEAAKKEYLKQLAAY 328
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 57.0 bits (136), Expect = 1e-08
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 50 PKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDD 108
PK K K +DPN P+ P A+ +F + IK ++P + +V+K + MW+ + E+
Sbjct: 236 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 295
Query: 109 KHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGA 143
K Y++K K++Y K +AA+ AA + A
Sbjct: 296 KQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESA 330
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,653,280
Number of Sequences: 37866
Number of extensions: 367031
Number of successful extensions: 1554
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 251
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.