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Search of human proteins with 239746597
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746597 PREDICTED: hypothetical protein XP_002343794 [Homo
sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746597 PREDICTED: hypothetical protein XP_002343794 [Homo ... 442 e-125
gi|55750053 atrophin-1 [Homo sapiens] 35 0.036
gi|55750041 atrophin-1 [Homo sapiens] 35 0.036
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 34 0.11
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 34 0.11
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 34 0.11
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 34 0.11
gi|239757363 PREDICTED: hypothetical protein isoform 1 [Homo sap... 33 0.24
gi|239751921 PREDICTED: hypothetical protein isoform 1 [Homo sap... 33 0.24
gi|239746411 PREDICTED: hypothetical protein XP_002343707 isofor... 33 0.24
gi|187960059 syndecan 3 [Homo sapiens] 31 0.68
gi|116063562 FERM domain containing 4A [Homo sapiens] 31 0.68
gi|239757060 PREDICTED: hypothetical protein [Homo sapiens] 31 0.89
gi|239751570 PREDICTED: hypothetical protein XP_002347902 [Homo ... 31 0.89
gi|239746082 PREDICTED: hypothetical protein XP_002343651 [Homo ... 31 0.89
gi|24432011 progestin and adipoQ receptor family member VI isofo... 30 1.2
gi|169214048 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|89057602 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|37551995 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 30 2.0
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 29 3.4
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 29 3.4
gi|58197558 tudor domain containing 6 [Homo sapiens] 29 3.4
gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo ... 28 4.4
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 28 4.4
gi|11968059 matrix metalloproteinase 25 preproprotein [Homo sapi... 28 4.4
gi|6005830 plakophilin 3 [Homo sapiens] 28 4.4
gi|83367077 mucin 16 [Homo sapiens] 28 5.8
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 28 5.8
gi|116235448 hypothetical protein LOC81610 [Homo sapiens] 28 5.8
>gi|239746597 PREDICTED: hypothetical protein XP_002343794 [Homo
sapiens]
Length = 213
Score = 442 bits (1138), Expect = e-125
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MEETKALGSLDGDSKRRLRVPDGQRLHLSQVCSDRPQSVCIQVLIKTVCCSTPPRVVCWR 60
MEETKALGSLDGDSKRRLRVPDGQRLHLSQVCSDRPQSVCIQVLIKTVCCSTPPRVVCWR
Sbjct: 1 MEETKALGSLDGDSKRRLRVPDGQRLHLSQVCSDRPQSVCIQVLIKTVCCSTPPRVVCWR 60
Query: 61 ALRVPTNARALGLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSL 120
ALRVPTNARALGLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSL
Sbjct: 61 ALRVPTNARALGLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSL 120
Query: 121 ISPTGTDVFIGQTDPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLTPKAASS 180
ISPTGTDVFIGQTDPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLTPKAASS
Sbjct: 121 ISPTGTDVFIGQTDPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLTPKAASS 180
Query: 181 SKTLTAKCLSGPISPTKFKLTNIFFLKPKHKED 213
SKTLTAKCLSGPISPTKFKLTNIFFLKPKHKED
Sbjct: 181 SKTLTAKCLSGPISPTKFKLTNIFFLKPKHKED 213
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.4 bits (80), Expect = 0.036
Identities = 38/133 (28%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 72 GLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGT--DVF 129
GL+ PAR + P P + P +S P+QP+ S H + PT
Sbjct: 150 GLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAP 209
Query: 130 IGQTDPHKKLPPKWTGPYTVILSTPT-------AVRVRGLPNWIHRTRVKLTPKAASSSK 182
G PH +L P TG +LS P A G PN + TP + SSS
Sbjct: 210 PGAPPPHPQLYPGGTGG---VLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSG 266
Query: 183 TLTAKCLSGPISP 195
A P +P
Sbjct: 267 ASGAPPTKPPTTP 279
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.4 bits (80), Expect = 0.036
Identities = 38/133 (28%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 72 GLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGT--DVF 129
GL+ PAR + P P + P +S P+QP+ S H + PT
Sbjct: 150 GLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAP 209
Query: 130 IGQTDPHKKLPPKWTGPYTVILSTPT-------AVRVRGLPNWIHRTRVKLTPKAASSSK 182
G PH +L P TG +LS P A G PN + TP + SSS
Sbjct: 210 PGAPPPHPQLYPGGTGG---VLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSG 266
Query: 183 TLTAKCLSGPISP 195
A P +P
Sbjct: 267 ASGAPPTKPPTTP 279
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 74 ALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQT 133
++ P++ +P+P + P +P +S S S ++ T T + T
Sbjct: 499 SILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKSTQT----VAKTTTAAAVAST 554
Query: 134 DPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLT------PKAASSSKTLTAK 187
P + P T++ PTA++ G P + + K PK+ S+S
Sbjct: 555 GPSSR------SPSTLLPKKPTAIKTEGKPAEVKKMTAKSVPADLSRPKSTSTSSMKKTT 608
Query: 188 CLSGP-----ISPTKFKLT 201
LSG + P++ K T
Sbjct: 609 TLSGTAPAAGVVPSRVKAT 627
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 74 ALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQT 133
++ P++ +P+P + P +P +S S S ++ T T + T
Sbjct: 764 SILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKSTQT----VAKTTTAAAVAST 819
Query: 134 DPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLT------PKAASSSKTLTAK 187
P + P T++ PTA++ G P + + K PK+ S+S
Sbjct: 820 GPSSR------SPSTLLPKKPTAIKTEGKPAEVKKMTAKSVPADLSRPKSTSTSSMKKTT 873
Query: 188 CLSGP-----ISPTKFKLT 201
LSG + P++ K T
Sbjct: 874 TLSGTAPAAGVVPSRVKAT 892
Score = 28.5 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 100 QPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQTDPHKKLPP 141
QP + SS S R ++S TG D+ T P+K+LPP
Sbjct: 657 QPSELSSETSGIARPEEGRPVVSGTGNDI---TTPPNKELPP 695
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 74 ALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQT 133
++ P++ +P+P + P +P +S S S ++ T T + T
Sbjct: 499 SILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKSTQT----VAKTTTAAAVAST 554
Query: 134 DPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLT------PKAASSSKTLTAK 187
P + P T++ PTA++ G P + + K PK+ S+S
Sbjct: 555 GPSSR------SPSTLLPKKPTAIKTEGKPAEVKKMTAKSVPADLSRPKSTSTSSMKKTT 608
Query: 188 CLSGP-----ISPTKFKLT 201
LSG + P++ K T
Sbjct: 609 TLSGTAPAAGVVPSRVKAT 627
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 74 ALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQT 133
++ P++ +P+P + P +P +S S S ++ T T + T
Sbjct: 764 SILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKSTQT----VAKTTTAAAVAST 819
Query: 134 DPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLT------PKAASSSKTLTAK 187
P + P T++ PTA++ G P + + K PK+ S+S
Sbjct: 820 GPSSR------SPSTLLPKKPTAIKTEGKPAEVKKMTAKSVPADLSRPKSTSTSSMKKTT 873
Query: 188 CLSGP-----ISPTKFKLT 201
LSG + P++ K T
Sbjct: 874 TLSGTAPAAGVVPSRVKAT 892
Score = 28.5 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 100 QPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQTDPHKKLPP 141
QP + SS S R ++S TG D+ T P+K+LPP
Sbjct: 657 QPSELSSETSGIARPEEGRPVVSGTGNDI---TTPPNKELPP 695
>gi|239757363 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 169
Score = 32.7 bits (73), Expect = 0.24
Identities = 39/148 (26%), Positives = 55/148 (37%), Gaps = 29/148 (19%)
Query: 58 CWRALRVPTNARALG-LALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHA 116
C RA R + + G LK FRPR W S Q G S A R+S A
Sbjct: 38 CARARRSKASTKVSGGCRLKHPLIFRPR--WRILAKKITSAGSQRSPGGSRAGRRVSARA 95
Query: 117 HRSLISPTGTDVFIGQTDPHKKLPPKWTGPY--TVILSTPTAVRVRGLPNWIHRTRVKLT 174
+ +SP GT GP +++P++ + G P R + T
Sbjct: 96 AAARLSPWGTQ-----------------GPSQGRANMASPSSTQHVGSPRSQRRVKATAT 138
Query: 175 -------PKAASSSKTLTAKCLSGPISP 195
P++ SSS + A C P+ P
Sbjct: 139 GHTGCPRPQSRSSSSSSKANCCLTPMVP 166
>gi|239751921 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 169
Score = 32.7 bits (73), Expect = 0.24
Identities = 39/148 (26%), Positives = 55/148 (37%), Gaps = 29/148 (19%)
Query: 58 CWRALRVPTNARALG-LALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHA 116
C RA R + + G LK FRPR W S Q G S A R+S A
Sbjct: 38 CARARRSKASTKVSGGCRLKHPLIFRPR--WRILAKKITSAGSQRSPGGSRAGRRVSARA 95
Query: 117 HRSLISPTGTDVFIGQTDPHKKLPPKWTGPY--TVILSTPTAVRVRGLPNWIHRTRVKLT 174
+ +SP GT GP +++P++ + G P R + T
Sbjct: 96 AAARLSPWGTQ-----------------GPSQGRANMASPSSTQHVGSPRSQRRVKATAT 138
Query: 175 -------PKAASSSKTLTAKCLSGPISP 195
P++ SSS + A C P+ P
Sbjct: 139 GHTGCPRPQSRSSSSSSKANCCLTPMVP 166
>gi|239746411 PREDICTED: hypothetical protein XP_002343707 isoform 1
[Homo sapiens]
Length = 169
Score = 32.7 bits (73), Expect = 0.24
Identities = 39/148 (26%), Positives = 55/148 (37%), Gaps = 29/148 (19%)
Query: 58 CWRALRVPTNARALG-LALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHA 116
C RA R + + G LK FRPR W S Q G S A R+S A
Sbjct: 38 CARARRSKASTKVSGGCRLKHPLIFRPR--WRILAKKITSAGSQRSPGGSRAGRRVSARA 95
Query: 117 HRSLISPTGTDVFIGQTDPHKKLPPKWTGPY--TVILSTPTAVRVRGLPNWIHRTRVKLT 174
+ +SP GT GP +++P++ + G P R + T
Sbjct: 96 AAARLSPWGTQ-----------------GPSQGRANMASPSSTQHVGSPRSQRRVKATAT 138
Query: 175 -------PKAASSSKTLTAKCLSGPISP 195
P++ SSS + A C P+ P
Sbjct: 139 GHTGCPRPQSRSSSSSSKANCCLTPMVP 166
>gi|187960059 syndecan 3 [Homo sapiens]
Length = 442
Score = 31.2 bits (69), Expect = 0.68
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 66 TNARALGLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTG 125
TN + +G + RP + P + P++P + +++ S+ ++ A S PT
Sbjct: 117 TNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTV 176
Query: 126 TDV--FIGQTDPHKKLPPKWTGPYTVILSTPTAVRVRGLPNWIHRTRVKLTPKAASSSKT 183
V + P P +T T ++ T R+ LP T TP+A S T
Sbjct: 177 ATVPATVATATPSTPAAPPFTAT-TAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTT 235
>gi|116063562 FERM domain containing 4A [Homo sapiens]
Length = 1039
Score = 31.2 bits (69), Expect = 0.68
Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 39/161 (24%)
Query: 65 PTNARALGLALKPARGFRPRP--------QWTYHPSIWESRPQQPDKGSSSASS------ 110
P ++ GL +P RP P Q YH + ++ P +P S S+
Sbjct: 564 PLHSPHKGLPPRPPSHNRPPPPQSLEGLRQMHYHRNDYDKSPIKPKMWSESSLDEPYEKV 623
Query: 111 -RLSVHAHRSLISPTGTDVFIGQTDPHKKLPPKWT-----GPYTVILSTPTAVRVRGLPN 164
+ S H+H S HK+ P + G + ++P +RGLP+
Sbjct: 624 KKRSSHSHSS---------------SHKRFPSTGSCAEAGGGSNSLQNSP----IRGLPH 664
Query: 165 WIHRTRVKLTPKAASSSKTLTAKCLSGPISPTKFKLTNIFF 205
W ++ + TP S S ISPT+ + F
Sbjct: 665 WNSQSSMPSTPDLRVRSPHYVHSTRSVDISPTRLHSLALHF 705
>gi|239757060 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 30.8 bits (68), Expect = 0.89
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 26 LHLSQVCSDRPQSVCIQVLIKTVCCS--TPPRVVCWRALRVPTNARALGLALKPARGFRP 83
+ L + C R S ++ L + C+ +PP + + L +P A G + KP +G RP
Sbjct: 102 VQLGRRCLSR-SSAALETLAQCHFCTLPSPPPQLSFLNLPIPPQLEACGSSCKPDQGCRP 160
Query: 84 RPQ 86
PQ
Sbjct: 161 DPQ 163
>gi|239751570 PREDICTED: hypothetical protein XP_002347902 [Homo
sapiens]
Length = 168
Score = 30.8 bits (68), Expect = 0.89
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 26 LHLSQVCSDRPQSVCIQVLIKTVCCS--TPPRVVCWRALRVPTNARALGLALKPARGFRP 83
+ L + C R S ++ L + C+ +PP + + L +P A G + KP +G RP
Sbjct: 102 VQLGRRCLSR-SSAALETLAQCHFCTLPSPPPQLSFLNLPIPPQLEACGSSCKPDQGCRP 160
Query: 84 RPQ 86
PQ
Sbjct: 161 DPQ 163
>gi|239746082 PREDICTED: hypothetical protein XP_002343651 [Homo
sapiens]
Length = 168
Score = 30.8 bits (68), Expect = 0.89
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 26 LHLSQVCSDRPQSVCIQVLIKTVCCS--TPPRVVCWRALRVPTNARALGLALKPARGFRP 83
+ L + C R S ++ L + C+ +PP + + L +P A G + KP +G RP
Sbjct: 102 VQLGRRCLSR-SSAALETLAQCHFCTLPSPPPQLSFLNLPIPPQLEACGSSCKPDQGCRP 160
Query: 84 RPQ 86
PQ
Sbjct: 161 DPQ 163
>gi|24432011 progestin and adipoQ receptor family member VI isoform
1 [Homo sapiens]
Length = 351
Score = 30.4 bits (67), Expect = 1.2
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 37 QSVCIQVLIKTVCCSTPPRVVCWRALRVPTNARALGLALKPARGFRPRPQWTYHPSIWES 96
Q C + +CC RV WR + P N+ A L L RG RP P S
Sbjct: 235 QPPCFGPPVHALCC----RVAHWRGVPRPNNSEAPSLTLS-WRGQRPGP----------S 279
Query: 97 RPQQPDKGSSSASSRLSVHAHRSLISPTGTD 127
++P G + + LS + PTG +
Sbjct: 280 ADEEPRFGPNQVGTHLS-------LEPTGAE 303
>gi|169214048 PREDICTED: hypothetical protein [Homo sapiens]
Length = 881
Score = 29.6 bits (65), Expect = 2.0
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 66 TNARALGLALKPARGFRPRPQWTYHPSIWESRPQQPDK---------------GSSSASS 110
+N A G L P F P P I S PQ P K + + +
Sbjct: 95 SNVSAEGQDLSPVSPFSETPGSEVFPDI--SDPQVPAKDPKPSFTVKTPASNISTQVSHT 152
Query: 111 RLSVHAHRSLISPTGTDVFIGQTDPHKK----------LPPKWTGPYTVILSTPTAVRVR 160
+LSV A S SP D+ + P K P + GP V++ T + +
Sbjct: 153 KLSVEAPDSKFSPDDMDLKLSAQSPESKFSAETHSAASFPQQVGGPLAVLVGTTIRLPLV 212
Query: 161 GLPN 164
+PN
Sbjct: 213 PIPN 216
>gi|89057602 PREDICTED: hypothetical protein [Homo sapiens]
Length = 881
Score = 29.6 bits (65), Expect = 2.0
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 66 TNARALGLALKPARGFRPRPQWTYHPSIWESRPQQPDK---------------GSSSASS 110
+N A G L P F P P I S PQ P K + + +
Sbjct: 95 SNVSAEGQDLSPVSPFSETPGSEVFPDI--SDPQVPAKDPKPSFTVKTPASNISTQVSHT 152
Query: 111 RLSVHAHRSLISPTGTDVFIGQTDPHKK----------LPPKWTGPYTVILSTPTAVRVR 160
+LSV A S SP D+ + P K P + GP V++ T + +
Sbjct: 153 KLSVEAPDSKFSPDDMDLKLSAQSPESKFSAETHSAASFPQQVGGPLAVLVGTTIRLPLV 212
Query: 161 GLPN 164
+PN
Sbjct: 213 PIPN 216
>gi|37551995 PREDICTED: hypothetical protein [Homo sapiens]
Length = 867
Score = 29.6 bits (65), Expect = 2.0
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 66 TNARALGLALKPARGFRPRPQWTYHPSIWESRPQQPDK---------------GSSSASS 110
+N A G L P F P P I S PQ P K + + +
Sbjct: 95 SNVSAEGQDLSPVSPFSETPGSEVFPDI--SDPQVPAKDPKPSFTVKTPASNISTQVSHT 152
Query: 111 RLSVHAHRSLISPTGTDVFIGQTDPHKK----------LPPKWTGPYTVILSTPTAVRVR 160
+LSV A S SP D+ + P K P + GP V++ T + +
Sbjct: 153 KLSVEAPDSKFSPDDMDLKLSAQSPESKFSAETHSAASFPQQVGGPLAVLVGTTIRLPLV 212
Query: 161 GLPN 164
+PN
Sbjct: 213 PIPN 216
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 29.6 bits (65), Expect = 2.0
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 98 PQQPDKGSS--SASSRLSVHAHRSLISPTGTDVFIGQTDPHKKLPPKWTGPYTVILSTPT 155
P PDKGSS S+S SVH H+S+ +P + +G + K+ T P +
Sbjct: 93 PLIPDKGSSIPSSSFHTSVH-HQSIHTPASGPLSVGNISHNPKMAQPRTEPMPSL----- 146
Query: 156 AVRVRGLPNWIHRTRVKLTPKAASSS 181
+ G P+ H T+ +L + SS
Sbjct: 147 HAKSCGPPDSQHLTQDRLGQEGFGSS 172
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 28.9 bits (63), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 83 PRPQWTYHP-SIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQTDPHKKLPP 141
P PQ+ Y P S ++ + + P SSS+SS S + S S + + P LPP
Sbjct: 73 PPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQA----KKPDPPLPP 128
Query: 142 KWTGP 146
+ P
Sbjct: 129 AFGAP 133
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 28.9 bits (63), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 83 PRPQWTYHP-SIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQTDPHKKLPP 141
P PQ+ Y P S ++ + + P SSS+SS S + S S + + P LPP
Sbjct: 73 PPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQA----KKPDPPLPP 128
Query: 142 KWTGP 146
+ P
Sbjct: 129 AFGAP 133
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 28.9 bits (63), Expect = 3.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 94 WESRPQQPDK-GSSSASSRLSVHAHRSLISPT 124
WE R + PDK GS AS L H +R+L+ T
Sbjct: 303 WEEREESPDKPGSPCASCGLDGHWYRALLLET 334
>gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo
sapiens]
Length = 684
Score = 28.5 bits (62), Expect = 4.4
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 51 STPPRVVCWRALRVPTNARA-LGLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSAS 109
ST VC R PT A +G A + RG + Y WE PQ+ ++G+ +
Sbjct: 279 STREDCVCSRGALSPTAGVAGMGAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPA 338
Query: 110 SRLSVHAHRSLISPTGTDVFIGQ 132
+L V +S P G + GQ
Sbjct: 339 FQL-VPVSQSDSIPLGLTLVKGQ 360
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 28.5 bits (62), Expect = 4.4
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 51 STPPRVVCWRALRVPTNARA-LGLALKPARGFRPRPQWTYHPSIWESRPQQPDKGSSSAS 109
ST VC R PT A +G A + RG + Y WE PQ+ ++G+ +
Sbjct: 279 STREDCVCSRGALSPTAGVAGMGAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPA 338
Query: 110 SRLSVHAHRSLISPTGTDVFIGQ 132
+L V +S P G + GQ
Sbjct: 339 FQL-VPVSQSDSIPLGLTLVKGQ 360
>gi|11968059 matrix metalloproteinase 25 preproprotein [Homo
sapiens]
Length = 562
Score = 28.5 bits (62), Expect = 4.4
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 29/113 (25%)
Query: 82 RPRPQWTYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTGTDVFIGQTDPHKKLPP 141
RP P + S+WE P PD + +S G F K
Sbjct: 445 RPDPGYPRDLSLWEGAPPSPDDVT---------------VSNAGDTYFF-------KGAH 482
Query: 142 KWTGPYTVILSTPTAVRVRGLPNWI------HRTRVKLTPKAASSSKTLTAKC 188
W P I + P A + G PNW+ R PKA S+T +C
Sbjct: 483 YWRFPKNSIKTEPDAPQPMG-PNWLDCPAPSSGPRAPRPPKATPVSETCDCQC 534
>gi|6005830 plakophilin 3 [Homo sapiens]
Length = 797
Score = 28.5 bits (62), Expect = 4.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 59 WRALRVPTNARALGLALKPARGFRPRPQWTYHPSIWESR 97
+ L+ ++R+ GL+ GFRP + Y P+ W SR
Sbjct: 84 YHTLQAGFSSRSQGLSGDKTSGFRPIAKPAYSPASWSSR 122
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 28.1 bits (61), Expect = 5.8
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 88 TYHPSIWESRPQQPDKGSSSASSRLSVHAHRSLISPTG----TDVFIGQTDPHKKLPPKW 143
T PS W+S P + S S + + ++H + + TG ++ T P K
Sbjct: 3919 TSSPS-WKSSPYERIAPSESTTDKEAIHPSTNTVETTGWVTSSEHASHSTIPAHSASSKL 3977
Query: 144 TGPYTVILSTPTAVRVRGLPNWIHRTRVKLTPKA 177
T P + A+ W TR + P +
Sbjct: 3978 TSPVVTTSTREQAIVSMSTTTWPESTRARTEPNS 4011
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 28.1 bits (61), Expect = 5.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 82 RPRPQWTYHPSIWESRPQQPDKGSSSASS 110
RP Q + P WE RP+ P + + SA +
Sbjct: 137 RPESQLSDRPQSWEQRPRGPGRSARSAGA 165
>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 5.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 105 SSSASSRLSVHAHRSLISPTGTDVFIGQTDPHKKLPPKWTG 145
SSS S SV + S+ S TG+ I TD H PK+ G
Sbjct: 502 SSSLKSSSSVSSQGSVASSTGSPASIRTTDFHNPGYPKYLG 542
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,724,897
Number of Sequences: 37866
Number of extensions: 471680
Number of successful extensions: 1240
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1227
Number of HSP's gapped (non-prelim): 40
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.