Guide to the Human Genome
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Name: LOC100288552 Sequence: fasta or formatted (169aa) NCBI GI: 239751921
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {169aa} PREDICTED: hypothetical protein XP_002343707 isoform 1
alt prot {114aa} PREDICTED: hypothetical protein XP_002343708 isoform 2
alt prot {114aa} PREDICTED: hypothetical protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         20           4
 C cysteine            3.6          6           2
 D aspartate           0.0          0           0
 E glutamate           0.6          1           1
 F phenylalanine       1.2          2           1
 G glycine             8.9         15           2
 H histidine           2.4          4           1
 I isoleucine          2.4          4           1
 K lysine              5.3          9           2
 L leucine             4.7          8           1
 M methionine          1.8          3           1
 N asparagine          1.2          2           1
 P proline            10.7         18           2
 Q glutamine           3.6          6           1
 R arginine           13.0         22           2
 S serine             17.8         30           6
 T threonine           5.9         10           1
 V valine              4.1          7           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100293347          1.000   PREDICTED: hypothetical protein isoform 1 
LOC100288552          1.000   PREDICTED: hypothetical protein XP_002343707 isofor...
LOC643368             0.063   PREDICTED: similar to hCG1803335 
LOC643368             0.057   PREDICTED: similar to hCG1803335 
FLG                   0.038   filaggrin 
LOC100287688          0.038   PREDICTED: hypothetical protein XP_002342270 
TNS1                  0.035   tensin 
USP6                  0.035   ubiquitin specific protease 6 
ZC3H18                0.035   zinc finger CCCH-type containing 18 
LOC643395             0.031   PREDICTED: hypothetical protein 
ARTN                  0.031   neurotrophic factor artemin isoform 2 
ARTN                  0.031   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.031   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.031   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.031   neurotrophic factor artemin isoform 3 precursor [Ho...
SRRM2                 0.031   splicing coactivator subunit SRm300 
ACIN1                 0.031   apoptotic chromatin condensation inducer 1 
LOC339742             0.031   PREDICTED: hypothetical protein 
LOC100134240          0.031   PREDICTED: hypothetical protein 
ANO8                  0.028   anoctamin 8 
TNRC18                0.028   trinucleotide repeat containing 18 
ZRANB2                0.028   zinc finger protein 265 isoform 1 
ZRANB2                0.028   zinc finger protein 265 isoform 2 
LOC100290023          0.028   PREDICTED: hypothetical protein XP_002348147 
CLASP1                0.028   CLIP-associating protein 1 isoform 1 
LOC100133638          0.025   PREDICTED: hypothetical protein 
LOC339742             0.025   PREDICTED: hypothetical protein 
JMY                   0.025   junction-mediating and regulatory protein 
NOM1                  0.025   nucleolar protein with MIF4G domain 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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