Guide to the Human Genome
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Name: LOC100289128 Sequence: fasta or formatted (168aa) NCBI GI: 239746082
Description:

PREDICTED: hypothetical protein XP_002343651

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         17           2
 C cysteine            5.4          9           1
 D aspartate           2.4          4           1
 E glutamate           4.2          7           1
 F phenylalanine       3.6          6           1
 G glycine             6.5         11           2
 H histidine           1.8          3           1
 I isoleucine          1.8          3           1
 K lysine              1.2          2           1
 L leucine             7.7         13           1
 M methionine          1.2          2           1
 N asparagine          2.4          4           1
 P proline            14.9         25           3
 Q glutamine           4.8          8           1
 R arginine           10.7         18           2
 S serine              9.5         16           2
 T threonine           5.4          9           1
 V valine              4.8          8           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343651 
LOC100290832          1.000   PREDICTED: hypothetical protein XP_002347902 
LOC100293286          0.997   PREDICTED: hypothetical protein 
WIPF2                 0.027   WIRE protein 
TNKS1BP1              0.024   tankyrase 1-binding protein 1 
PCNT                  0.021   pericentrin 
LOC731282             0.021   PREDICTED: hypothetical protein 
FAM47A                0.021   hypothetical protein LOC158724 
SH3BP1                0.021   SH3-domain binding protein 1 
LOC100134152          0.018   PREDICTED: similar to synaptotagmin XV-b 
LOC285141             0.018   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.018   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.018   PREDICTED: hypothetical protein LOC285141 
MIA3                  0.018   melanoma inhibitory activity family, member 3 [Homo...
MAST2                 0.018   microtubule associated serine/threonine kinase 2 [H...
SYT15                 0.018   synaptotagmin XV isoform a 
SYT15                 0.018   synaptotagmin XV isoform b 
LOC100288303          0.018   PREDICTED: hypothetical protein XP_002343794 
SRRM2                 0.018   splicing coactivator subunit SRm300 
LOC731282             0.015   PREDICTED: hypothetical protein 
INF2                  0.015   inverted formin 2 isoform 2 
INF2                  0.015   inverted formin 2 isoform 1 
LOC100293644          0.015   PREDICTED: hypothetical protein 
LOC100287563          0.015   PREDICTED: hypothetical protein 
LOC100287563          0.015   PREDICTED: hypothetical protein XP_002343733 
APBB1IP               0.015   amyloid beta (A4) precursor protein-binding, family ...
TMPRSS13              0.015   transmembrane protease, serine 13 
LOC100288243          0.015   PREDICTED: hypothetical protein 
LOC100288243          0.015   PREDICTED: hypothetical protein XP_002342233 
YLPM1                 0.015   YLP motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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