Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC147645 Sequence: fasta or formatted (881aa) NCBI GI: 89057602
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {881aa} PREDICTED: hypothetical protein
alt prot {867aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         92           3
 C cysteine            1.6         14           2
 D aspartate           4.5         40           2
 E glutamate           4.5         40           2
 F phenylalanine       2.6         23           1
 G glycine             8.9         78           3
 H histidine           1.8         16           1
 I isoleucine          3.1         27           1
 K lysine              2.5         22           3
 L leucine            10.9         96           4
 M methionine          0.6          5           1
 N asparagine          1.4         12           1
 P proline            10.0         88           3
 Q glutamine           3.4         30           2
 R arginine            6.9         61           4
 S serine             11.2         99           3
 T threonine           5.3         47           2
 V valine              7.5         66           2
 W tryptophan          1.8         16           1
 Y tyrosine            1.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC147645             0.998   PREDICTED: hypothetical protein 
LOC147645             0.978   PREDICTED: hypothetical protein 
LOC338667             0.046   PREDICTED: hypothetical protein LOC338667 
LOC338667             0.046   PREDICTED: hypothetical protein LOC338667 
LOC338667             0.046   PREDICTED: hypothetical protein LOC338667 
HMCN2                 0.036   PREDICTED: hemicentin 2 
FLJ20674              0.036   hypothetical protein FLJ20674 
HSPG2                 0.035   heparan sulfate proteoglycan 2 
HMCN2                 0.034   PREDICTED: hemicentin 2 
HMCN2                 0.034   PREDICTED: hemicentin 2 
LOC100292387          0.033   PREDICTED: similar to hemicentin 2 
CEACAM8               0.033   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.032   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.032   carcinoembryonic antigen-related cell adhesion molec...
CEACAM6               0.031   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.030   carcinoembryonic antigen-related cell adhesion molec...
PSG8                  0.028   pregnancy specific beta-1-glycoprotein 8 isoform c ...
PSG8                  0.028   pregnancy specific beta-1-glycoprotein 8 isoform b ...
HMCN1                 0.028   hemicentin 1 
PSG11                 0.028   pregnancy specific beta-1-glycoprotein 11 isoform 1...
PSG5                  0.028   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.028   pregnancy specific beta-1-glycoprotein 5 
PSG8                  0.027   pregnancy specific beta-1-glycoprotein 8 isoform a [...
LOC100289200          0.026   PREDICTED: hypothetical protein XP_002342997 
AGER                  0.025   advanced glycosylation end product-specific receptor...
PSG6                  0.025   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG4                  0.025   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG7                  0.024   pregnancy specific beta-1-glycoprotein 7 precursor ...
PSG6                  0.024   pregnancy specific beta-1-glycoprotein 6 isoform b [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press