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Search of human proteins with 239746313
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746313 PREDICTED: similar to hCG1645909 [Homo sapiens]
(591 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens] 1213 0.0
gi|239746313 PREDICTED: similar to hCG1645909 [Homo sapiens] 1213 0.0
gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens] 1211 0.0
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 51 3e-06
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 51 3e-06
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens] 50 4e-06
gi|4557853 transcription factor SOX9 [Homo sapiens] 50 6e-06
gi|71143137 high-mobility group box 3 [Homo sapiens] 50 8e-06
gi|5902106 SRY-box 15 [Homo sapiens] 48 3e-05
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 47 4e-05
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 47 4e-05
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 47 4e-05
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 47 4e-05
gi|41406089 SRY-box 13 [Homo sapiens] 47 4e-05
gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] 47 6e-05
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 46 1e-04
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 46 1e-04
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 46 1e-04
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 45 2e-04
gi|148806881 hypothetical protein LOC57608 [Homo sapiens] 45 2e-04
gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo... 44 3e-04
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 44 3e-04
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 44 3e-04
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 44 3e-04
gi|194688135 high-mobility group box 2 [Homo sapiens] 44 5e-04
gi|194688133 high-mobility group box 2 [Homo sapiens] 44 5e-04
gi|11321591 high-mobility group box 2 [Homo sapiens] 44 5e-04
gi|55741677 SET domain containing 1A [Homo sapiens] 44 5e-04
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 44 5e-04
gi|39995080 hypothetical protein LOC79567 [Homo sapiens] 43 7e-04
>gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 1213 bits (3138), Expect = 0.0
Identities = 591/591 (100%), Positives = 591/591 (100%)
Query: 1 MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV 60
MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV
Sbjct: 1 MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV 60
Query: 61 HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS 120
HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS
Sbjct: 61 HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS 120
Query: 121 CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC 180
CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC
Sbjct: 121 CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC 180
Query: 181 PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ 240
PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ
Sbjct: 181 PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ 240
Query: 241 EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ 300
EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ
Sbjct: 241 EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ 300
Query: 301 IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSAY 360
IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSAY
Sbjct: 301 IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSAY 360
Query: 361 TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED 420
TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED
Sbjct: 361 TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED 420
Query: 421 SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP 480
SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP
Sbjct: 421 SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP 480
Query: 481 KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR 540
KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR
Sbjct: 481 KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR 540
Query: 541 PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ 591
PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ
Sbjct: 541 PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ 591
>gi|239746313 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 1213 bits (3138), Expect = 0.0
Identities = 591/591 (100%), Positives = 591/591 (100%)
Query: 1 MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV 60
MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV
Sbjct: 1 MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV 60
Query: 61 HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS 120
HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS
Sbjct: 61 HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS 120
Query: 121 CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC 180
CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC
Sbjct: 121 CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC 180
Query: 181 PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ 240
PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ
Sbjct: 181 PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ 240
Query: 241 EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ 300
EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ
Sbjct: 241 EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ 300
Query: 301 IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSAY 360
IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSAY
Sbjct: 301 IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSAY 360
Query: 361 TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED 420
TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED
Sbjct: 361 TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED 420
Query: 421 SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP 480
SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP
Sbjct: 421 SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP 480
Query: 481 KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR 540
KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR
Sbjct: 481 KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR 540
Query: 541 PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ 591
PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ
Sbjct: 541 PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ 591
>gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 1211 bits (3133), Expect = 0.0
Identities = 590/591 (99%), Positives = 590/591 (99%)
Query: 1 MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV 60
MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV
Sbjct: 1 MEEKWLLKGKLRNQRNQNKLLSPNKKQRKNHTSKLQELALLLPIALKTGTKKLTKKEILV 60
Query: 61 HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS 120
HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS
Sbjct: 61 HVLQYIQYLQRNIDAAKALFKCHITTGEGGLAGLGQKPAWGPARRRRHSTPSSSPSSQKS 120
Query: 121 CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC 180
CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC
Sbjct: 121 CLQGACQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPDQKGSGTGGTTTPPRC 180
Query: 181 PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ 240
PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ
Sbjct: 181 PDSCGHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAPFPALLAQ 240
Query: 241 EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ 300
EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ
Sbjct: 241 EDVARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPENSPQGSPLFLGPPQ 300
Query: 301 IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSAY 360
IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYL QAAFFEEVCLDLESSPSAY
Sbjct: 301 IDVWSGTGHPSEILGLSPSLFSSPGKLLPDEILEDDMEYLNQAAFFEEVCLDLESSPSAY 360
Query: 361 TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED 420
TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED
Sbjct: 361 TQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSED 420
Query: 421 SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP 480
SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP
Sbjct: 421 SDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKP 480
Query: 481 KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR 540
KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR
Sbjct: 481 KEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERR 540
Query: 541 PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ 591
PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ
Sbjct: 541 PYCTKARRFSRQHNRIVKQDGSSSEAEDWETPKPFYQLLAEKALPLPPHLQ 591
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 51.2 bits (121), Expect = 3e-06
Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 403 KAPSSSSSSSSSSSSSEDSDSEPLWKQREDM----QANPVGTPGSSEEDEDTTWTPTR-L 457
K +++ SS S E +S ++ ED+ +N + S+E D D + L
Sbjct: 461 KIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQL 520
Query: 458 ASPLLAAEKKATKGQVARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPG 517
+A ++K+ K KP E KKG P K+ ++ ++++ +R++ PG
Sbjct: 521 KKAKMAKDRKSRK--------KPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPG 571
Query: 518 TASTAATKELAQLWRVMTQQERRPYCTKARRFSRQHNRIVKQ----DGSSSEAEDWETPK 573
+ T +K+ ++W+ M+++++ + KA R + + +K+ G SS+ + + K
Sbjct: 572 ISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKKK 631
Query: 574 PFYQLLAEKALP 585
+ +K+ P
Sbjct: 632 KVKVKMEKKSTP 643
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 50.8 bits (120), Expect = 3e-06
Identities = 40/119 (33%), Positives = 48/119 (40%)
Query: 371 ASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSEDSDSEPLWKQR 430
+S+A S S SS S S S +S + SSSSSSSSSSSSS S S
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 431 EDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKPKEKKKGPCP 489
++ S D++ PT S A KATK P KK P P
Sbjct: 2666 SSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAP 2724
Score = 30.8 bits (68), Expect = 3.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 375 PKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSEDSD 422
PK P ++ + + + S SG+S + SSSSSS S + E+ D
Sbjct: 2541 PKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGD 2588
Score = 30.4 bits (67), Expect = 4.8
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 376 KDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSEDSDSEPLWKQREDMQA 435
+D S ++ D S S +S + SSSSSSSSSSS +++ E +
Sbjct: 2536 EDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEE--------EG 2587
Query: 436 NPVGTPGSSEEDEDTTWTPTRLASPLLAAEKKAT 469
+ G G + + +R ASP ++ ++
Sbjct: 2588 DKNGDGGCGTGGRNCSAASSRAASPASSSSSSSS 2621
>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 446
Score = 50.4 bits (119), Expect = 4e-06
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 4/157 (2%)
Query: 402 SKAPSSSSSSSSSSSSSEDSDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPL 461
S+ P S S ++SS S EDSDS+ G + R + +
Sbjct: 9 SQPPCSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGVAVGGARGDPAEAADERFPACI 68
Query: 462 LAAEKKATKG---QVARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGT 518
A + KG + PV+ P +K+ +N F+++ + R++ P
Sbjct: 69 RDAVSQVLKGYDWSLVPMPVRGGGGGALKAKPHVKRP-MNAFMVWAQAARRKLADQYPHL 127
Query: 519 ASTAATKELAQLWRVMTQQERRPYCTKARRFSRQHNR 555
+ +K L +LWR++++ E+RP+ +A R QH +
Sbjct: 128 HNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKK 164
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 50.1 bits (118), Expect = 6e-06
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 11/159 (6%)
Query: 400 GNSKAPSSSSSSSSSSSSSEDSDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLAS 459
G S APS + S S+ S R P G P +E E+ +
Sbjct: 17 GLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDLKKESEEDKFPVC---- 72
Query: 460 PLLAAEKKATKGQ---VARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCP 516
+ A + KG + PV+ K P +K+ +N F+++ + R++ P
Sbjct: 73 -IREAVSQVLKGYDWTLVPMPVRVNGSSKNK--PHVKRP-MNAFMVWAQAARRKLADQYP 128
Query: 517 GTASTAATKELAQLWRVMTQQERRPYCTKARRFSRQHNR 555
+ +K L +LWR++ + E+RP+ +A R QH +
Sbjct: 129 HLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKK 167
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 49.7 bits (117), Expect = 8e-06
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 477 PVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQ 536
P K +KKK P P K+ +GF +FC R + + PG + K+L ++W +
Sbjct: 80 PAKGGKKKKDPNAP---KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLND 136
Query: 537 QERRPYCTKARRFSRQHNRIV-------KQDGSSSEAE 567
E++PY TKA + ++ + V K DG+ A+
Sbjct: 137 SEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAK 174
>gi|5902106 SRY-box 15 [Homo sapiens]
Length = 233
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 441 PGSSEEDEDTTWTPTRLASPLLAAEKKATKGQVARAPVKPKEKKKGPCPPQMKKKCVNGF 500
PGSS++ + P A+ ++ + +G A +P P G P + K+ +N F
Sbjct: 4 PGSSQDQAWSLEPPAATAAASSSSGPQEREG--AGSPAAP-----GTLPLEKVKRPMNAF 56
Query: 501 IMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERRPYCTKARRFSRQHNR 555
+++ R+Q + P ++ +K L W+++ + E+RP+ +A+R +H R
Sbjct: 57 MVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLR 111
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 47.4 bits (111), Expect = 4e-05
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 475 RAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVM 534
+ P K +KKK P P K+ +GF +F R + + PG + K+L ++W +
Sbjct: 73 KGPAKGGKKKKDPSAP---KRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNL 129
Query: 535 TQQERRPYCTKARRFSRQHNRIVKQDGSSSEAEDWETP 572
E++PY TK + ++ + V S + + + P
Sbjct: 130 NDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRP 167
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 47.4 bits (111), Expect = 4e-05
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 475 RAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVM 534
+ P K +KKK P P K+ +GF +F R + + PG + K+L ++W +
Sbjct: 73 KGPAKGGKKKKDPSAP---KRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNL 129
Query: 535 TQQERRPYCTKARRFSRQHNRIVKQDGSSSEAEDWETP 572
E++PY TK + ++ + V S + + + P
Sbjct: 130 NDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRP 167
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 47.4 bits (111), Expect = 4e-05
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 475 RAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVM 534
+ P K +KKK P P K+ +GF +F R + + PG + K+L ++W +
Sbjct: 55 KGPAKGGKKKKDPSAP---KRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNL 111
Query: 535 TQQERRPYCTKARRFSRQHNRIVKQDGSSSEAEDWETP 572
E++PY TK + ++ + V S + + + P
Sbjct: 112 NDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRP 149
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 47.4 bits (111), Expect = 4e-05
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 475 RAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVM 534
+ P K +KKK P P K+ +GF +F R + + PG + K+L ++W +
Sbjct: 73 KGPAKGGKKKKDPSAP---KRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNL 129
Query: 535 TQQERRPYCTKARRFSRQHNRIVKQDGSSSEAEDWETP 572
E++PY TK + ++ + V S + + + P
Sbjct: 130 NDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRP 167
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 47.4 bits (111), Expect = 4e-05
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 34/192 (17%)
Query: 396 LSLSGNSKAPSSSSSSSSSSSSSEDSDSEPLWK--QREDMQANPVGTP-GSSEEDEDTTW 452
L+L+ KAP ++SSS S P D+Q++P P G E + T
Sbjct: 293 LNLTAKPKAPELPNTSSSPSLKMSSCVPRPPSHGGPTRDLQSSPPSLPLGFLGEGDAVTK 352
Query: 453 T-------------------PTRLASPLLAAEKKATKGQVARAPVKPKEKKKGPCP---- 489
T L++ + K ++ V P E+ C
Sbjct: 353 AIQDARQLLHSHSGALDGSPNTPFRKDLISLDSSPAKERLEDGCVHPLEEAMLSCDMDGS 412
Query: 490 ---PQMK-----KKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERRP 541
P+ + K+ +N F+++ + R++ +++ P +++ +K L W+ MT QE++P
Sbjct: 413 RHFPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQP 472
Query: 542 YCTKARRFSRQH 553
Y + R SRQH
Sbjct: 473 YYEEQARLSRQH 484
>gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
Length = 601
Score = 46.6 bits (109), Expect = 6e-05
Identities = 64/295 (21%), Positives = 110/295 (37%), Gaps = 44/295 (14%)
Query: 315 GLSPSLFSSPGKLLPDEILEDDMEYLTQAAFF----------EEVCLDLESSPSAYTQEA 364
GL L SP + + E+ +Y +Q A E+ L L ++ + A
Sbjct: 189 GLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTA 248
Query: 365 PQEKDTASKAPKDP-PESHSLHRSSVSLDH-CYLSLSGNSKAPSSSSSSSS--------- 413
++ ++S A P PE S + H L LSG S SSS
Sbjct: 249 RKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELV 308
Query: 414 -------------SSSSSEDSDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTP------ 454
S S + D E ++R +G + T P
Sbjct: 309 IDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPY 368
Query: 455 TRLASPLLAAEKKATKGQVARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRS 514
A+P L T G + K ++ K+ + KKK ++ + +FC+ R +
Sbjct: 369 AGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVAD 428
Query: 515 CPGTASTAATKELAQLWRVMTQQERRPYCTKARRFSRQHNR----IVKQDGSSSE 565
PG +K+LA++W+ + ++++ + KA+ + N+ VK+ SSSE
Sbjct: 429 HPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSE 483
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 483 KKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERRPY 542
KKK P P K+ +GF +FC R + + PG + K+L ++W + E++PY
Sbjct: 85 KKKDPNAP---KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 141
Query: 543 CTKARRFSRQHNRIV 557
TKA + ++ + V
Sbjct: 142 VTKAAKLKEKYEKDV 156
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 483 KKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERRPY 542
KKK P P K+ +GF +FC R + + PG + K+L ++W + E++PY
Sbjct: 85 KKKDPNAP---KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 141
Query: 543 CTKARRFSRQHNRIV 557
TKA + ++ + V
Sbjct: 142 VTKAAKLKEKYEKDV 156
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 483 KKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQQERRPY 542
KKK P P K+ +GF +FC R + + PG + K+L ++W + E++PY
Sbjct: 85 KKKDPNAP---KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 141
Query: 543 CTKARRFSRQHNRIV 557
TKA + ++ + V
Sbjct: 142 VTKAAKLKEKYEKDV 156
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 45.1 bits (105), Expect = 2e-04
Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 50/290 (17%)
Query: 210 LAEDTIHCDISSCWCQGSVQDDAPFPALLAQEDVARIHFLNKTQPHPRQKLVFYDSSEDV 269
L ED + + Q + +++ P P LL +E + PHP+ S E++
Sbjct: 392 LTEDRKKASLVALPEQTASEEETP-PPLLTKE-------ASSPPPHPQ-----LHSEEEI 438
Query: 270 DKGSLDADPWLPAWTPENSPQGS-PLFLGPPQIDVWSGTGHPSEILGLSPSLFSSPGKLL 328
+ A P L +P N+ + L + + + G S + S + SP + +
Sbjct: 439 EPMEGPAPPVLIQLSPPNTDADTRELLVSQHTVQLVGGL---SPLSSPSDTKAESPAEKV 495
Query: 329 PDEILEDDMEYLTQAAFFEEVCLDLESSPSAYT-----QEAPQEKDTASKAPKDPP---- 379
P+E + ++ T A + + L+ ES SA +E K + K P
Sbjct: 496 PEESVLPLVQKSTLADYSAQKDLEPESDRSAQPLPLKIEELALAKGITEECLKQPSLEQK 555
Query: 380 ----ESHSL---HRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSEDSDS----EPLWK 428
SH+L HR S D S +S++ SSSSSSS S S S DS PL
Sbjct: 556 EGRRASHTLLPSHRLKQSAD------SSSSRSSSSSSSSSRSRSRSPDSSGSRSHSPLRS 609
Query: 429 QREDM-----QANPVGTP--GSSEEDEDTTWTPTRLASPLLAAEKKATKG 471
++ D+ ANP G P GS E + + +R S + K + G
Sbjct: 610 KQRDVAQARTHANPRGRPKMGSRSTSESRSRSRSRSRSASSNSRKSLSPG 659
>gi|148806881 hypothetical protein LOC57608 [Homo sapiens]
Length = 1359
Score = 45.1 bits (105), Expect = 2e-04
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 407 SSSSSSSSSSSSEDSDSEPLWKQREDMQANPVGTPGSSE----EDEDTTWTPTRLASPLL 462
SSSSSSSSSSSSE+S++EP + R + VG G+S E + W P SP+
Sbjct: 848 SSSSSSSSSSSSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVP---ESPVC 904
Query: 463 AAEKKATKGQVARAPVKPKEKKKGPCPPQMKKKCVNGFIMFC 504
+ + +K + ++P + P P + G FC
Sbjct: 905 RSGRGESKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPFC 946
>gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo
sapiens]
Length = 377
Score = 44.3 bits (103), Expect = 3e-04
Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 473 VARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWR 532
V+ + + + + +G P +K+ +N F+++ + R++ +++ P ++ +K L W+
Sbjct: 151 VSESRIYRESRGRGSNEPHIKRP-MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWK 209
Query: 533 VMTQQERRPYCTKARRFSRQH 553
MT E++PY + R S+QH
Sbjct: 210 AMTNLEKQPYYEEQARLSKQH 230
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 44.3 bits (103), Expect = 3e-04
Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 473 VARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWR 532
V+ + + + + +G P +K+ +N F+++ + R++ +++ P ++ +K L W+
Sbjct: 524 VSESRIYRESRGRGSNEPHIKRP-MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWK 582
Query: 533 VMTQQERRPYCTKARRFSRQH 553
MT E++PY + R S+QH
Sbjct: 583 AMTNLEKQPYYEEQARLSKQH 603
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 44.3 bits (103), Expect = 3e-04
Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 473 VARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWR 532
V+ + + + + +G P +K+ +N F+++ + R++ +++ P ++ +K L W+
Sbjct: 537 VSESRIYRESRGRGSNEPHIKRP-MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWK 595
Query: 533 VMTQQERRPYCTKARRFSRQH 553
MT E++PY + R S+QH
Sbjct: 596 AMTNLEKQPYYEEQARLSKQH 616
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 44.3 bits (103), Expect = 3e-04
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 19/199 (9%)
Query: 355 SSPSAYTQEAPQEKDTAS-----KAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSS 409
SS S+++ + P + +++ KA +P E+ S S S A SS S
Sbjct: 319 SSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSES-AQSSPS 377
Query: 410 SSSSSSSSSEDSDSE--------PLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPL 461
+SSSSS SS DSD E PL ED+Q+ SS +E T S L
Sbjct: 378 NSSSSSDSSSDSDFEPSQNHSQGPLRSMVEDLQSEESDEDDSSSGEEAAGKTNPGRDSRL 437
Query: 462 LAAEKKATKGQVARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTAST 521
++ ++ + P + + P PP K V+G ++ + I GT
Sbjct: 438 SFSDSESDNSADSSLPSREPPPPQKPPPPNSK---VSGRRSPESCSKPEKILK-KGTYDK 493
Query: 522 AATKELAQLW-RVMTQQER 539
A T EL +L R+M +ER
Sbjct: 494 AYTDELVELHRRLMALRER 512
Score = 32.0 bits (71), Expect = 1.6
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 105 RRRHSTPSSSPSSQKSCLQGACQKPRKKKLTQAS-ESQTRTPKPRRSLALNKPEKLVAPS 163
R R + S S S + Q K +KL + + + P P+ A +P+ + +
Sbjct: 204 RPRKDSESKSSSKELEREQAKSSKDTSRKLGEGRLPKEEKAPPPKA--AFKEPKMALKET 261
Query: 164 PDQKGSGTGGTTTPPRCPDSCGHPRPASSSPP 195
+ S GG PP P RPA++ P
Sbjct: 262 KLESTSPKGGPPPPPPPPPRASSKRPATADSP 293
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 43.5 bits (101), Expect = 5e-04
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 462 LAAEKKATKGQVARAPVKPKEKKKGPCP-PQMKKKCVNGFIMFCRMNRKQYIRSCPGTAS 520
+A KA + + V PK KKG P K+ + F +FC +R + PG +
Sbjct: 63 MAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI 122
Query: 521 TAATKELAQLWRVMTQQERRPYCTKARRFSRQHNRIVKQDGSSSEAE 567
K+L ++W + ++++PY KA + ++ + + + ++E
Sbjct: 123 GDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 43.5 bits (101), Expect = 5e-04
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 462 LAAEKKATKGQVARAPVKPKEKKKGPCP-PQMKKKCVNGFIMFCRMNRKQYIRSCPGTAS 520
+A KA + + V PK KKG P K+ + F +FC +R + PG +
Sbjct: 63 MAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI 122
Query: 521 TAATKELAQLWRVMTQQERRPYCTKARRFSRQHNRIVKQDGSSSEAE 567
K+L ++W + ++++PY KA + ++ + + + ++E
Sbjct: 123 GDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 43.5 bits (101), Expect = 5e-04
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 462 LAAEKKATKGQVARAPVKPKEKKKGPCP-PQMKKKCVNGFIMFCRMNRKQYIRSCPGTAS 520
+A KA + + V PK KKG P K+ + F +FC +R + PG +
Sbjct: 63 MAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI 122
Query: 521 TAATKELAQLWRVMTQQERRPYCTKARRFSRQHNRIVKQDGSSSEAE 567
K+L ++W + ++++PY KA + ++ + + + ++E
Sbjct: 123 GDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 169
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 43.5 bits (101), Expect = 5e-04
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 348 EVCLDLESSPSAYTQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLSLSGNSKAPSS 407
E +D + + +E D++SK SL+ S ++ S S +S + SS
Sbjct: 991 EEAVDTTKKETEVSDGEDEESDSSSKC--------SLYADSDG-ENDSTSDSESSSSSSS 1041
Query: 408 SSSSSSSSSSSEDSDSEPLWKQREDMQANPVGTPGSSEEDEDTTWTPTRLASPLLAAEKK 467
SSSSSSSSSSS S S + E+ + P P +S P + P A +
Sbjct: 1042 SSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASP-------PPREVPVPTPAPVEV 1094
Query: 468 ATKGQVARAPVKP-KEKKKGPCPP 490
+VA +PV P E++ P P
Sbjct: 1095 PVPERVAGSPVTPLPEQEASPARP 1118
Score = 32.0 bits (71), Expect = 1.6
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 360 YTQEAPQEKDTASKAPKDPPESHSLHRSSVSLDHCYLS---------LSGNSKAPSSSSS 410
Y+Q++ T S + K P S + ++ + S H S ++ + A +SSS+
Sbjct: 281 YSQDSAYSSSTTSTSFK-PRRSENSYQDAFSRRHFSASSASTTASTAIAATTAATASSSA 339
Query: 411 SSSSSSSSEDSDSEPLWKQREDMQAN-PVGTPGSSEEDEDTTWTPTR 456
SSSS SSS S S Q AN P + T++ P R
Sbjct: 340 SSSSLSSSSSSSSSSSSSQFRSSDANYPAYYESWNRYQRHTSYPPRR 386
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 43.5 bits (101), Expect = 5e-04
Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 325 GKLLPDEILEDDMEYLTQAAFFEEVCLDLESSPSA-------YTQEAPQE--KDTASKAP 375
G +LP E+ + E + F ++ L LE P T P E + KA
Sbjct: 80 GFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAG 139
Query: 376 KDPPESHSLHRSSVSLDHCYLSLSGNSKAPSSSSSSSSSSSSSEDSDS 423
DP + S+H SS S S S +S + SSSSSSSSSSSSS S S
Sbjct: 140 GDP--NRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Score = 30.4 bits (67), Expect = 4.8
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 396 LSLSGNSKAPSSSSSSSSSSSS---SEDSDSEPLWKQREDMQANPVGTPGSSEEDEDTTW 452
+S +S+ PS +SSSSSSSSS S+ PL +D+ ++ ED D
Sbjct: 370 ISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEVEDND--- 426
Query: 453 TPTRLASPLLAAEKKATKGQVARAPVKPKEKKKGPC---PPQMKKKCVNGFIMFCRMNRK 509
+ + P+ ++ + ++ P PP K N I+ + K
Sbjct: 427 NDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIK 486
Query: 510 Q-----YIRSCPGTASTAATKELAQLW-RVMTQQER 539
Q I++ G A EL +L R+MT +ER
Sbjct: 487 QSKSDKQIKN--GECDKAYLDELVELHRRLMTLRER 520
>gi|39995080 hypothetical protein LOC79567 [Homo sapiens]
Length = 1219
Score = 43.1 bits (100), Expect = 7e-04
Identities = 57/199 (28%), Positives = 74/199 (37%), Gaps = 30/199 (15%)
Query: 126 CQKPRKKKLTQASESQTRTPKPRRSLALNKPEKLVAPSPD------QKGSGTGGTTTP-P 178
C P TQA RTP P + + KP L +P+PD Q S T TP P
Sbjct: 706 CSPPVSNSYTQADPMAPRTPHPSPAHSSRKP--LTSPAPDPSESTVQSLSPTPSPPTPAP 763
Query: 179 RCPDSC-----GHPRPASSSPPGDRKGGQSQLTLLDLAEDTIHCDISSCWCQGSVQDDAP 233
+ D C P P ++ GDR + L L A D QG Q+
Sbjct: 764 QHSDLCLAMAVQTPVPTAAGGSGDR-SLEEALGALMAALDDYRGQFPE--LQGLEQEVTR 820
Query: 234 FPALLAQED---VARIHFLNKTQPHPRQKLVFYDSSEDVDKGSLDADPWLPAWTPE---- 286
+LL Q +R L+ T H + F + ED D D P +PE
Sbjct: 821 LESLLMQRQGLTRSRASSLSITVEHALESFSFLNEDEDEDN---DVPGDRPPSSPEAGAE 877
Query: 287 ---NSPQGSPLFLGPPQID 302
+SP PL G P +D
Sbjct: 878 DSIDSPSARPLSTGCPALD 896
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,036,880
Number of Sequences: 37866
Number of extensions: 1675479
Number of successful extensions: 12906
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 387
Number of HSP's that attempted gapping in prelim test: 9443
Number of HSP's gapped (non-prelim): 2282
length of query: 591
length of database: 18,247,518
effective HSP length: 108
effective length of query: 483
effective length of database: 14,157,990
effective search space: 6838309170
effective search space used: 6838309170
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.