Guide to the Human Genome
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Name: LOC388553 Sequence: fasta or formatted (591aa) NCBI GI: 239751822
Description:

PREDICTED: similar to hCG1645909

Not currently referenced in the text

Other entries for this name:
alt prot {591aa} PREDICTED: similar to hCG1645909
alt mRNA {591aa} PREDICTED: similar to hCG1645909
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         42           2
 C cysteine            2.5         15           1
 D aspartate           5.1         30           2
 E glutamate           5.9         35           2
 F phenylalanine       2.0         12           2
 G glycine             5.6         33           2
 H histidine           2.4         14           1
 I isoleucine          2.4         14           1
 K lysine              8.8         52           3
 L leucine            10.0         59           3
 M methionine          1.2          7           1
 N asparagine          2.4         14           1
 P proline             9.6         57           2
 Q glutamine           6.4         38           2
 R arginine            5.2         31           4
 S serine             11.7         69          13
 T threonine           5.8         34           3
 V valine              2.7         16           1
 W tryptophan          1.7         10           1
 Y tyrosine            1.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1645909 
LOC388553             1.000   PREDICTED: similar to hCG1645909 
LOC388553             0.998   PREDICTED: similar to hCG1645909 
SSRP1                 0.022   structure specific recognition protein 1 
TNRC18                0.022   trinucleotide repeat containing 18 
SOX8                  0.021   SRY (sex determining region Y)-box 8 
SOX9                  0.021   transcription factor SOX9 
HMGB3                 0.021   high-mobility group box 3 
SOX15                 0.019   SRY-box 15 
LOC729595             0.019   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.019   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.019   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.019   PREDICTED: similar to high mobility group box 3 iso...
SOX13                 0.019   SRY-box 13 
HMGXB4                0.019   high-mobility group protein 2-like 1 
LOC646993             0.018   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.018   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.018   PREDICTED: similar to high mobility group box 3 [Ho...
ACIN1                 0.017   apoptotic chromatin condensation inducer 1 
KIAA1462              0.017   hypothetical protein LOC57608 
SOX5                  0.016   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.016   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.016   SRY (sex determining region Y)-box 5 isoform a [Homo...
MLLT1                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithora...
HMGB2                 0.016   high-mobility group box 2 
HMGB2                 0.016   high-mobility group box 2 
HMGB2                 0.016   high-mobility group box 2 
SETD1A                0.016   SET domain containing 1A 
MLLT3                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithor...
FAM65A                0.015   hypothetical protein LOC79567 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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