Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745962
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745962 PREDICTED: hypothetical protein XP_002343626 [Homo
sapiens]
(398 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745962 PREDICTED: hypothetical protein XP_002343626 [Homo ... 868 0.0
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 3e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 40 0.005
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 40 0.005
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 40 0.005
gi|4505531 oxysterol binding protein [Homo sapiens] 39 0.006
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 39 0.008
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 39 0.008
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 39 0.008
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.018
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 38 0.018
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 37 0.031
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 37 0.031
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 37 0.031
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 37 0.041
gi|23397672 homeobox D4 [Homo sapiens] 36 0.053
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 36 0.053
gi|89886484 XK, Kell blood group complex subunit-related family,... 36 0.070
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 36 0.070
gi|93277115 ataxin 7-like 2 [Homo sapiens] 36 0.070
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.091
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.091
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 35 0.12
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 35 0.12
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 35 0.12
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.12
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens] 35 0.12
gi|25777643 potassium intermediate/small conductance calcium-act... 35 0.12
gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens] 35 0.12
gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens] 35 0.12
>gi|239745962 PREDICTED: hypothetical protein XP_002343626 [Homo
sapiens]
Length = 398
Score = 868 bits (2244), Expect = 0.0
Identities = 398/398 (100%), Positives = 398/398 (100%)
Query: 1 MAAMAFCWAPPCCAPGGHVGCGRWRWWKVVGEEGGIQGAWWLGGDEAQKGLKFAGGEQAA 60
MAAMAFCWAPPCCAPGGHVGCGRWRWWKVVGEEGGIQGAWWLGGDEAQKGLKFAGGEQAA
Sbjct: 1 MAAMAFCWAPPCCAPGGHVGCGRWRWWKVVGEEGGIQGAWWLGGDEAQKGLKFAGGEQAA 60
Query: 61 AVMGLLLLCRPSEARSLENMASASGKLGGVAGVLLGVHICGREHGLAVSQSVQPLSPLPG 120
AVMGLLLLCRPSEARSLENMASASGKLGGVAGVLLGVHICGREHGLAVSQSVQPLSPLPG
Sbjct: 61 AVMGLLLLCRPSEARSLENMASASGKLGGVAGVLLGVHICGREHGLAVSQSVQPLSPLPG 120
Query: 121 GSYSPPSAVFCHYPGGRGWSAIQEHLVSSMGKSSPPASEACLLKQPPENSRDDGWQACGG 180
GSYSPPSAVFCHYPGGRGWSAIQEHLVSSMGKSSPPASEACLLKQPPENSRDDGWQACGG
Sbjct: 121 GSYSPPSAVFCHYPGGRGWSAIQEHLVSSMGKSSPPASEACLLKQPPENSRDDGWQACGG 180
Query: 181 LPVDQCRAPVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRR 240
LPVDQCRAPVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRR
Sbjct: 181 LPVDQCRAPVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRR 240
Query: 241 ADSGPGPRPCPPPLTIWWWWWLLGMLVSWKNVLSAARTSNCQWAACSNCFAWSAAQPAAS 300
ADSGPGPRPCPPPLTIWWWWWLLGMLVSWKNVLSAARTSNCQWAACSNCFAWSAAQPAAS
Sbjct: 241 ADSGPGPRPCPPPLTIWWWWWLLGMLVSWKNVLSAARTSNCQWAACSNCFAWSAAQPAAS 300
Query: 301 TNWLIMTWCRSSSMFTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPP 360
TNWLIMTWCRSSSMFTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPP
Sbjct: 301 TNWLIMTWCRSSSMFTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPP 360
Query: 361 APPPPARRMLWFDSRGPADTTNNSAGRGWAGPTFGDCR 398
APPPPARRMLWFDSRGPADTTNNSAGRGWAGPTFGDCR
Sbjct: 361 APPPPARRMLWFDSRGPADTTNNSAGRGWAGPTFGDCR 398
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.9 bits (102), Expect = 3e-04
Identities = 81/305 (26%), Positives = 100/305 (32%), Gaps = 85/305 (27%)
Query: 75 RSLENMASASGKLGGVAGVLLGVHICGREHGLAVSQSVQPLSPLPGGSYSPPSAVFCHYP 134
R+ E A+A+G LG + G G A + P PG + PP A P
Sbjct: 46 RTPEVRAAAAGALGNHV-------VSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRAR-P 97
Query: 135 GGRGWSAIQEHLVSSMGKSSP--------PASEACLLKQPPENSRDDGWQACGGLPVDQC 186
GG G G SP PA A L+ PPE S +C +P
Sbjct: 98 GGGG--------PQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAG----SCAPVPAAAA 145
Query: 187 RAPVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRRADSGPG 246
A P P+ + P +P + L RA GPG
Sbjct: 146 VAAGPEPAPAGPA----------KPAGPAALA--------------------ARAGPGPG 175
Query: 247 PRPCPPPLTIWWWWWLLGMLVSWKNVLSAARTSNCQWAACSNCFAWSAAQPAASTNWLIM 306
P P P P G AA+T N A + + AA PA S
Sbjct: 176 PGPGPGP----------GPGPGKPAGPGAAQTLNGSAALLN---SHHAAAPAVSL----- 217
Query: 307 TWCRSSSMFTDMARRGAGPGVSGRT-----QTRGCAGAGGRPPGAPGLALTAAAAAPPPA 361
+ + A PG +T A A PP AP A A AAAPPP
Sbjct: 218 --VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAP--APAAPAAAPPPP 273
Query: 362 PPPPA 366
PP PA
Sbjct: 274 PPAPA 278
Score = 30.8 bits (68), Expect = 2.2
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 18/73 (24%)
Query: 321 RGAGPGVSGRTQTRGC-AGAGGRPPGAPGLALTAAAAAPPPA--------------PPPP 365
R A G G G AGA G P AP AA PPPA PP P
Sbjct: 51 RAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSP 110
Query: 366 ARRMLWFDSRGPA 378
R ++ GPA
Sbjct: 111 RRPLV---PAGPA 120
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 39.7 bits (91), Expect = 0.005
Identities = 30/80 (37%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 323 AGPGVSGRTQTRGC--AGAGGRPPGAPGLALT---------AAAAAPPPAPPPPARRMLW 371
A P VS + G GAGG GA AL A AA PPP PPPP
Sbjct: 37 APPAVSAGSSPAGSPGGGAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAA 96
Query: 372 FDSRGPADTTNNSAGRGWAG 391
+ GP +AG G AG
Sbjct: 97 APASGPPAPPGLAAGPGPAG 116
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 39.7 bits (91), Expect = 0.005
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 310 RSSSMFTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAP-GLALTAAAAAPPPAPPPPARR 368
R + + + +G P V Q + A G PPGAP + A A PP PP P RR
Sbjct: 656 RPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRR 715
Query: 369 MLWFDSRGPADTTNNSAGRGWAGPTFG 395
GP + G G T G
Sbjct: 716 SHSLSRPGPTEGDAEGEAEGPVGSTLG 742
Score = 29.6 bits (65), Expect = 5.0
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 154 SPPASEACLLKQPPENSRDDGWQACGGLPVDQCRAPVPRPS-SSSPGGGPQSWRRQRRPG 212
SPPAS L QP +S G+P +P +P PG G +S R G
Sbjct: 948 SPPASS---LPQPEPSSLP-----AQGVPTPLAPSPAMQPPVPPCPGPGLESSAASRWNG 999
Query: 213 SRSFLEDILALCLHSRRGA---PRQHGCHRRADSGP------GPRPCPPP 253
AL G P C + A SGP GPRP PPP
Sbjct: 1000 ETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPP 1049
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 39.7 bits (91), Expect = 0.005
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 310 RSSSMFTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAP-GLALTAAAAAPPPAPPPPARR 368
R + + + +G P V Q + A G PPGAP + A A PP PP P RR
Sbjct: 738 RPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRR 797
Query: 369 MLWFDSRGPADTTNNSAGRGWAGPTFG 395
GP + G G T G
Sbjct: 798 SHSLSRPGPTEGDAEGEAEGPVGSTLG 824
Score = 29.6 bits (65), Expect = 5.0
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 154 SPPASEACLLKQPPENSRDDGWQACGGLPVDQCRAPVPRPS-SSSPGGGPQSWRRQRRPG 212
SPPAS L QP +S G+P +P +P PG G +S R G
Sbjct: 1030 SPPASS---LPQPEPSSLP-----AQGVPTPLAPSPAMQPPVPPCPGPGLESSAASRWNG 1081
Query: 213 SRSFLEDILALCLHSRRGA---PRQHGCHRRADSGP------GPRPCPPP 253
AL G P C + A SGP GPRP PPP
Sbjct: 1082 ETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPP 1131
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 39.3 bits (90), Expect = 0.006
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 320 RRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPAD 379
R AGPG + T A AGG PGA G+ AAA P PAPP S G
Sbjct: 36 RGDAGPGSGAASGTVVAAAAGGPGPGAGGV----AAAGPAPAPPTGG-------SGGSGA 84
Query: 380 TTNNSAGRGW 389
+ SA GW
Sbjct: 85 GGSGSAREGW 94
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 323 AGPGVSGRTQTRGCAGAGGR---------PPGAPGLALTAAAAAPPPAPPPP 365
A +SGR G AGAG + GAPG L +A PP PPPP
Sbjct: 24 AALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPP 75
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 323 AGPGVSGRTQTRGCAGAGGR---------PPGAPGLALTAAAAAPPPAPPPP 365
A +SGR G AGAG + GAPG L +A PP PPPP
Sbjct: 24 AALAISGRADEEGAAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPP 75
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 38.9 bits (89), Expect = 0.008
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 323 AGPGVSGRTQTRGCAGA--GGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPADT 380
A PG G +GA PP AP L T + PPP PPPPA T
Sbjct: 129 AHPGAGSYPCGGGSSGAQPSAPPPPAPPLPPTPSPPPPPPPPPPPAL---------SGYT 179
Query: 381 TNNSAGRGWAG 391
T NS G G +G
Sbjct: 180 TTNSGGGGSSG 190
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.7 bits (86), Expect = 0.018
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 325 PGVSGRTQTRGCAGAGGR--PPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPADTTN 382
PG SGR G G+ GR PGA G A PP AP P + GP
Sbjct: 1009 PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG-------APGPVGPAG 1061
Query: 383 NSAGRGWAGP 392
S RG GP
Sbjct: 1062 KSGDRGETGP 1071
Score = 35.0 bits (79), Expect = 0.12
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 325 PGVSGRTQTRGCAGAGGR--PPGAPGLALTAAAAAPP--------PAPPPPARRMLWFDS 374
PG G G GA G PPGA G A PP P PP PA +
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE---GG 906
Query: 375 RGPADTTNNSAGRGWAGP 392
+GP T + G GP
Sbjct: 907 KGPRGETGPAGRPGEVGP 924
Score = 33.5 bits (75), Expect = 0.35
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 315 FTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAP----PPAPPPPARRML 370
F A R PG SG G G G+ G T A P PP PP PA
Sbjct: 876 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKG 935
Query: 371 WFDSRGPADTTNNSAGRGWAG 391
+ GPA +G AG
Sbjct: 936 SPGADGPAGAPGTPGPQGIAG 956
Score = 29.6 bits (65), Expect = 5.0
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 22/90 (24%)
Query: 325 PGVSGRTQTRGCAGAGGR--PPGAPGLALTA----------AAAAP----------PPAP 362
PG G+T G AG GR PPG PG A AA P PP
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Query: 363 PPPARRMLWFDSRGPADTTNNSAGRGWAGP 392
PA + ++GP + RG GP
Sbjct: 607 VGPAGKDGEAGAQGPPGPAGPAGERGEQGP 636
Score = 29.3 bits (64), Expect = 6.5
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 316 TDMARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPP 365
TD G G G T RG G G PPG G+ PP P PP
Sbjct: 103 TDQETTGV-EGPKGDTGPRGPRGPAG-PPGRDGIPGQPGLPGPPGPPGPP 150
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 37.7 bits (86), Expect = 0.018
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 322 GAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGP-ADT 380
G GPG G A A P A A AAAAA P P PPA D++ A+
Sbjct: 17 GVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAER 76
Query: 381 TNNSAGRGWA 390
+AG G A
Sbjct: 77 AEEAAGPGAA 86
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 37.0 bits (84), Expect = 0.031
Identities = 48/179 (26%), Positives = 62/179 (34%), Gaps = 25/179 (13%)
Query: 189 PVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRRADSGPGPR 248
P P+ +SS GG S R + F ++ L S G + A R
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 249 PCPP-PLTIWWWWWLLGMLVSWKNVLSAARTSNCQ-----WAACSNCFAWSAAQPAASTN 302
C P +T+W W VSW S S Q W+ S C +A
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAA-------- 172
Query: 303 WLIMTWCRSSSMFTDMARRGAGPG--VSGRTQTRGCAGAGGRPPGAP-GLALTAAAAAP 358
M W + + +RG+G S R G G RP G P ALT AA P
Sbjct: 173 ---MNWRKC-----EKGKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVP 223
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 37.0 bits (84), Expect = 0.031
Identities = 48/179 (26%), Positives = 62/179 (34%), Gaps = 25/179 (13%)
Query: 189 PVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRRADSGPGPR 248
P P+ +SS GG S R + F ++ L S G + A R
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 249 PCPP-PLTIWWWWWLLGMLVSWKNVLSAARTSNCQ-----WAACSNCFAWSAAQPAASTN 302
C P +T+W W VSW S S Q W+ S C +A
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAA-------- 172
Query: 303 WLIMTWCRSSSMFTDMARRGAGPG--VSGRTQTRGCAGAGGRPPGAP-GLALTAAAAAP 358
M W + + +RG+G S R G G RP G P ALT AA P
Sbjct: 173 ---MNWRKC-----EKGKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVP 223
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 37.0 bits (84), Expect = 0.031
Identities = 48/179 (26%), Positives = 62/179 (34%), Gaps = 25/179 (13%)
Query: 189 PVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRRADSGPGPR 248
P P+ +SS GG S R + F ++ L S G + A R
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 249 PCPP-PLTIWWWWWLLGMLVSWKNVLSAARTSNCQ-----WAACSNCFAWSAAQPAASTN 302
C P +T+W W VSW S S Q W+ S C +A
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAA-------- 172
Query: 303 WLIMTWCRSSSMFTDMARRGAGPG--VSGRTQTRGCAGAGGRPPGAP-GLALTAAAAAP 358
M W + + +RG+G S R G G RP G P ALT AA P
Sbjct: 173 ---MNWRKC-----EKGKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVP 223
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 36.6 bits (83), Expect = 0.041
Identities = 48/179 (26%), Positives = 62/179 (34%), Gaps = 25/179 (13%)
Query: 189 PVPRPSSSSPGGGPQSWRRQRRPGSRSFLEDILALCLHSRRGAPRQHGCHRRADSGPGPR 248
P P+ +SS GG S R + F ++ L S G + A R
Sbjct: 61 PPPQSQASSHCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 249 PCPP-PLTIWWWWWLLGMLVSWKNVLSAARTSNCQ-----WAACSNCFAWSAAQPAASTN 302
C P +T+W W VSW S S Q W+ S C +A
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAA-------- 172
Query: 303 WLIMTWCRSSSMFTDMARRGAGPG--VSGRTQTRGCAGAGGRPPGAP-GLALTAAAAAP 358
M W + + +RG+G S R G G RP G P ALT AA P
Sbjct: 173 ---MNWRKC-----EKGKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVP 223
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 36.2 bits (82), Expect = 0.053
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 322 GAGPGVSGRTQTRGCAGAGGRPPGAPGLALTA------AAAAPPPAPPPPARRMLWFDSR 375
G+GPG RG G+ PG PG A A APPPAP P AR D +
Sbjct: 64 GSGPGPGSALPARG----HGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPK 119
Query: 376 GPADTT 381
P T
Sbjct: 120 QPPSGT 125
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 36.2 bits (82), Expect = 0.053
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 244 GPGPRPCPPPLTIWWWWWLLGMLVSW 269
GP P CP WW WLLG+L++W
Sbjct: 450 GPAPAWCPCGSCCSWWKWLLGLLLTW 475
Score = 33.1 bits (74), Expect = 0.45
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 325 PGVSGRTQTRGCAGAGGRP-----PGAPGLALTAAAAAPPPAPPPP 365
PG++G +G G GRP PGAPG +T+ ++ P PP
Sbjct: 778 PGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPP 823
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 318 MARRG-AGPGVSGRTQTRGCAGAGG--RPPGAPG-LALTAAAAAPPPAPPP 364
M RG AGP SG RG AG G PPG PG + ++ +P P PP
Sbjct: 629 MGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPP 679
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 324 GPGVSGRTQTRGCAGAG-GRPPGAPGLALTAA---AAAPPPAPPPPARRMLWFDSRGPAD 379
GP + G RG G G PPG PG L+ + + PP P PP + +GP
Sbjct: 869 GPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPK----GDQGPPG 924
Query: 380 TTNNSAGRGWAG 391
+ +G G
Sbjct: 925 PRGHQGEQGLPG 936
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 35.8 bits (81), Expect = 0.070
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 295 AQPAASTNWLIMTWCRSSSMFTDMARRGAGPGVSGRTQTRGCAGAGG----RPPGAPGLA 350
++P S++ I C +SS + R + GR R A GG +PP APG
Sbjct: 46 SEPGESSSMHICHCCNTSSCYWG-CRSACLRSLLGRKPRRSAAADGGDQPLQPPAAPGAG 104
Query: 351 L---TAAAAAPPPAPPPPARRMLWFD 373
T +AA P PPPP W D
Sbjct: 105 RQPPTPSAARP--EPPPPQVERPWLD 128
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.8 bits (81), Expect = 0.070
Identities = 40/136 (29%), Positives = 51/136 (37%), Gaps = 23/136 (16%)
Query: 119 PGGSYSPPSAVFCHYPGGRGWSAIQEHLVSSMGKSSPPASEACLLKQPPENSRDDGWQAC 178
PG ++SPP P R +A + GK SP A +S+ G +A
Sbjct: 328 PGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSA-------PSSQGRGGRAA 380
Query: 179 GGLPVDQCRAPVPRPSSSSPGGGPQSWRRQRRP-----GSRSFLEDILALCLHSRRGAPR 233
GG + R R S SS + RR+ RP SRS + S RGAP
Sbjct: 381 GGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAP- 439
Query: 234 QHGCHRRADSGPGPRP 249
GPGP P
Sbjct: 440 ----------GPGPEP 445
>gi|93277115 ataxin 7-like 2 [Homo sapiens]
Length = 722
Score = 35.8 bits (81), Expect = 0.070
Identities = 35/107 (32%), Positives = 41/107 (38%), Gaps = 17/107 (15%)
Query: 100 CGREHGLAVSQSVQPLSPLPGGSYSPP----SAVFCHYPGGRGWS--AIQEHLVSSMGKS 153
C R HG PLS L G + PP S+ CH G+G + A SS K
Sbjct: 99 CERRHG--------PLSKLYGRAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKG 150
Query: 154 SPPASEACLLKQPPENSRDDGWQACGGLPVDQCRAPVPRPSSSSPGG 200
S QPPE ++ D GGL D P P S P G
Sbjct: 151 QGSRSRG---HQPPEKTQKDNLCQPGGLTKDSPGKPPMAPPSKEPPG 194
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.4 bits (80), Expect = 0.091
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 16/75 (21%)
Query: 324 GP-GVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPP-----PAPPPPARRMLWFDSRGP 377
GP G +G T +G GA G PPGA G A PP P PP P GP
Sbjct: 873 GPQGPTGVTGPKGARGAQG-PPGATGFPGAAGRVGPPGSNGNPGPPGPP---------GP 922
Query: 378 ADTTNNSAGRGWAGP 392
+ RG +GP
Sbjct: 923 SGKDGPKGARGDSGP 937
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 325 PGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPAD 379
PG GR+ G AG G P G PG PP PP P M F GP +
Sbjct: 1187 PGPRGRSGETGPAGPPGNP-GPPG----------PPGPPGPGIDMSAFAGLGPRE 1230
Score = 30.0 bits (66), Expect = 3.8
Identities = 28/76 (36%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 318 MARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGP 377
M RG PG GRT G AGA G G PG A PP P PA G
Sbjct: 323 MGPRGL-PGERGRTGPAGAAGARGN-DGQPG-------PAGPPGPVGPA---------GG 364
Query: 378 ADTTNNSAGRGWAGPT 393
+G AGPT
Sbjct: 365 PGFPGAPGAKGEAGPT 380
Score = 29.3 bits (64), Expect = 6.5
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 19/87 (21%)
Query: 325 PGVSGRTQTRGCAGAGGRP--PGAPGLALTAAAAAPPPAPPPPARRMLWFD--------- 373
PG G +G G G P PG G + A PP A PP + + +
Sbjct: 704 PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGP 763
Query: 374 --------SRGPADTTNNSAGRGWAGP 392
+GP GRG GP
Sbjct: 764 KGDRGDVGEKGPEGAPGKDGGRGLTGP 790
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.4 bits (80), Expect = 0.091
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 16/75 (21%)
Query: 324 GP-GVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPP-----PAPPPPARRMLWFDSRGP 377
GP G +G T +G GA G PPGA G A PP P PP P GP
Sbjct: 804 GPQGPTGVTGPKGARGAQG-PPGATGFPGAAGRVGPPGSNGNPGPPGPP---------GP 853
Query: 378 ADTTNNSAGRGWAGP 392
+ RG +GP
Sbjct: 854 SGKDGPKGARGDSGP 868
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 325 PGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPAD 379
PG GR+ G AG G P G PG PP PP P M F GP +
Sbjct: 1118 PGPRGRSGETGPAGPPGNP-GPPG----------PPGPPGPGIDMSAFAGLGPRE 1161
Score = 30.0 bits (66), Expect = 3.8
Identities = 28/76 (36%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 318 MARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGP 377
M RG PG GRT G AGA G G PG A PP P PA G
Sbjct: 254 MGPRGL-PGERGRTGPAGAAGARGN-DGQPG-------PAGPPGPVGPA---------GG 295
Query: 378 ADTTNNSAGRGWAGPT 393
+G AGPT
Sbjct: 296 PGFPGAPGAKGEAGPT 311
Score = 29.3 bits (64), Expect = 6.5
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 19/87 (21%)
Query: 325 PGVSGRTQTRGCAGAGGRP--PGAPGLALTAAAAAPPPAPPPPARRMLWFD--------- 373
PG G +G G G P PG G + A PP A PP + + +
Sbjct: 635 PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGP 694
Query: 374 --------SRGPADTTNNSAGRGWAGP 392
+GP GRG GP
Sbjct: 695 KGDRGDVGEKGPEGAPGKDGGRGLTGP 721
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/53 (39%), Positives = 23/53 (43%)
Query: 340 GGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPADTTNNSAGRGWAGP 392
GGRP P L AA AP P P P R ++SR S G G A P
Sbjct: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQP 243
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/53 (39%), Positives = 23/53 (43%)
Query: 340 GGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPADTTNNSAGRGWAGP 392
GGRP P L AA AP P P P R ++SR S G G A P
Sbjct: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQP 243
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/53 (39%), Positives = 23/53 (43%)
Query: 340 GGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPADTTNNSAGRGWAGP 392
GGRP P L AA AP P P P R ++SR S G G A P
Sbjct: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQP 243
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 35.0 bits (79), Expect = 0.12
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query: 315 FTDMARRGAG--------PGVSGRTQTRGCAGA----------GGRPPGAPGLALTAAAA 356
F D+A G+G P +G+ Q C+ GG PP AP
Sbjct: 548 FEDVAPTGSGEPGATRESPKANGQNQASPCSSGDDMEISDDDRGGSPPPAPTPPQQPPPP 607
Query: 357 APPPAPPPP 365
PPP PPPP
Sbjct: 608 PPPPPPPPP 616
>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
Length = 337
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/45 (46%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 324 GPGVSGRTQTRGCAGAGGRPPGAPGLALTAAA--AAPPPAPPPPA 366
G G SGR R PG G A A A PPPAPPPPA
Sbjct: 12 GVGTSGRGTLRALR------PGVTGAAAATATPPAGPPPAPPPPA 50
>gi|25777643 potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 1 [Homo
sapiens]
Length = 543
Score = 35.0 bits (79), Expect = 0.12
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 322 GAGPGVSGRTQTRGCAGAGGRPPGAPGLALTAAAAAPPPAPPPPARRMLWFDSRGPADTT 381
G+GPG GR AG +PP +PGL + A + P P P + R D D
Sbjct: 15 GSGPGALGRDPPDPEAGHPPQPPHSPGLQV-VVAKSEPARPSPGSPRGQPQDQDDDEDDE 73
Query: 382 NNSAGR 387
+ AGR
Sbjct: 74 EDEAGR 79
Score = 28.9 bits (63), Expect = 8.5
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 347 PGLALTAAAAAPPPAPPPPARRMLWFDSRGPADTTNNSAGRGWAGPTFGDC 397
PGL A PPP PP P GP D S+ W DC
Sbjct: 500 PGLIAQAIRPPPPPLPPRP--------GPGPQDQAARSSPCRWTPVAPSDC 542
>gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]
Length = 457
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/38 (55%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 342 RPPGAPGLALTAAAA-APPPAPPPPARRMLWFDSRGPA 378
RP GAP A A AA A PP PPPP R S GPA
Sbjct: 50 RPEGAPAPAARAPAAPAAPPPPPPPPRTADPGGSPGPA 87
>gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]
Length = 250
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/38 (55%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 342 RPPGAPGLALTAAAA-APPPAPPPPARRMLWFDSRGPA 378
RP GAP A A AA A PP PPPP R S GPA
Sbjct: 50 RPEGAPAPAARAPAAPAAPPPPPPPPRTADPGGSPGPA 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,074,951
Number of Sequences: 37866
Number of extensions: 1503525
Number of successful extensions: 15758
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 12955
Number of HSP's gapped (non-prelim): 2805
length of query: 398
length of database: 18,247,518
effective HSP length: 104
effective length of query: 294
effective length of database: 14,309,454
effective search space: 4206979476
effective search space used: 4206979476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.